prot_H-paniculata_contig18953.4734.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig18953.4734.1
Unique Nameprot_H-paniculata_contig18953.4734.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length171
Homology
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM)

HSP 1 Score: 113 bits (283), Expect = 1.890e-27
Identity = 64/162 (39.51%), Postives = 103/162 (63.58%), Query Frame = 0
Query:    2 STLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIP-FVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITD----CSRDEGGETDILVAVYVDDLVIAGRRENV-DEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITI 157
            +++R V SLAA++  +L  +DV  A+LN  ++E++++  P  +     D P  V +L++SLYGLKQ+ R WN T+DDF++ +G ++  +D      RD  G+  I VA+YVDDLV+A   + + +  KH  S+RF M DLG L   LG+E++ DR +G +T+
Sbjct:   76 TSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTV 233          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM)

HSP 1 Score: 115 bits (287), Expect = 1.030e-26
Identity = 65/162 (40.12%), Postives = 103/162 (63.58%), Query Frame = 0
Query:    2 STLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIP-FVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITD----CSRDEGGETDILVAVYVDDLVIAGRRENV-DEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITI 157
            +++R V SLAA++  +L  +DV  A+LN  ++E++++  P  +     D P  V +L++SLYGLKQ+ R WN T+DDF++ +G ++  +D      RD  G+  I VA+YVDDLV+A   + + D  KH  S+RF M DLG L   LG+E++ DR +G +T+
Sbjct:  374 TSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTV 531          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM)

HSP 1 Score: 111 bits (277), Expect = 1.700e-26
Identity = 63/162 (38.89%), Postives = 102/162 (62.96%), Query Frame = 0
Query:    2 STLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIP-FVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITD----CSRDEGGETDILVAVYVDDLVIAGRRENV-DEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITI 157
            +++R V SLAA++  +L  +DV  A+LN  ++E++++  P  +     D P  V +L++SLYGLKQ+ R WN T+DDF++ +G ++  +D      RD  G+  I VA+YVDDLV+A   + + +  KH  S+RF M DLG L   LG+E++ D  +G +T+
Sbjct:  115 TSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTV 272          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A8H7FCS8_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Athelia sp. TMB TaxID=2748771 RepID=A0A8H7FCS8_9AGAM)

HSP 1 Score: 108 bits (269), Expect = 2.410e-26
Identity = 65/172 (37.79%), Postives = 100/172 (58.14%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITDCSRD--EGGETDILVAVYVDDLVIAGR-RENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGRITHVRLDM 169
            M+T+R + +LAA  D  L  +DV  A+LN  ++EE+++K P  F     +  +V RL KS+YGLKQ+ R WN  L   LV +G  R  ++ S      G   I++ V+VDDL +A   ++ +D+F       F ++DLG  S +LGIE+ RDRPN +I++S     H  +D+
Sbjct:    1 MATVRVLLALAAFEDLHLRSIDVSTAFLNGDLDEEIYMKQPEGFQEGGPE--WVLRLLKSIYGLKQSARQWNKKLHSVLVKMGFARLESEHSIYVYRRGAVRIIMPVFVDDLTLASSDQQAMDDFVMELGTHFDIRDLGDTSLLLGIEILRDRPNRSISLSQ---RHYIVDL 167          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A146H2N5_MYCCL (Integrase catalytic domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H2N5_MYCCL)

HSP 1 Score: 114 bits (284), Expect = 3.960e-26
Identity = 64/167 (38.32%), Postives = 101/167 (60.48%), Query Frame = 0
Query:    2 STLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITDCSRD----EGGETDILVAVYVDDLVIAGRREN-VDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGRIT 163
            S LR + ++AA  D ELE VD+  A+LN  +  +++++ P  F    RD  +V +L KS+YGLKQ  R W+  LD+ L G+G +R    C       + GE  ++V V+VDD+ IA + +  V + K++    F+++DLG  S +LG+EV RDRPN T+++S  + T
Sbjct:  999 SALRAILAIAALEDLELESVDISSAFLNGEINSKVYMRQPEGF--VERDSSWVWKLIKSIYGLKQASRIWHKKLDETLRGLGFQR--VSCEHSVWVWKRGEDRVIVPVFVDDITIASKNQPAVAKLKNDLKSAFKLRDLGPTSFLLGVEVIRDRPNRTLSLSQRQYT 1161          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A409WVI7_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WVI7_9AGAR)

HSP 1 Score: 114 bits (284), Expect = 3.980e-26
Identity = 72/165 (43.64%), Postives = 99/165 (60.00%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIP--FVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITDCS----RDEGGETDILVAVYVDDLVIAGR-RENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITIS 158
            + ++R + +LAA+HD EL+ +DV  AYLN  + E+L++ LPP+      DIP     +L+KSLYGLKQ  R WN T D  L  +G  R   +      R EGG+   LV VYVDDL++A   R  +DE K   +  F+M+DLG  S VLGI++RRDR    I +S
Sbjct: 1093 LESIRIILALAAKHDLELDQMDVQTAYLNGKLTEDLYL-LPPD----GVDIPKGHCWKLKKSLYGLKQAGRTWNKTFDSSLKDLGFTRLDAETCLYVMRGEGGKLCFLV-VYVDDLILAATSRAYMDEIKTKLAATFKMRDLGPASYVLGIQIRRDRRKRIIGLS 1251          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: H3H9D6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9D6_PHYRM)

HSP 1 Score: 113 bits (283), Expect = 5.080e-26
Identity = 64/162 (39.51%), Postives = 103/162 (63.58%), Query Frame = 0
Query:    2 STLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIP-FVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITD----CSRDEGGETDILVAVYVDDLVIAGRRENV-DEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITI 157
            +++R V SLAA++  +L  +DV  A+LN  ++E++++  P  +     D P  V +L++SLYGLKQ+ R WN T+DDF++ +G ++  +D      RD  G+  I VA+YVDDLV+A   + + +  KH  S+RF M DLG L   LG+E++ DR +G +T+
Sbjct:  494 TSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTV 651          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: Q9SZY0_ARATH (Putative retrotransposon n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SZY0_ARATH)

HSP 1 Score: 112 bits (280), Expect = 1.350e-25
Identity = 63/163 (38.65%), Postives = 105/163 (64.42%), Query Frame = 0
Query:    3 TLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEF-SPFSRDIPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITD-C----SRDEGGETDILVAVYVDDLVIAGR-RENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITIS 158
            ++R + ++ AE ++ELE +DV  A+L+  +EE++F++ P  + S F +    V  L K++YGLKQ+ R WN   D +++ IG ERS  + C    S ++G +  +L+  YVDD+++A R  + + E K   S++F MKDLG+  R+LG+E+ RDR  GT+T+S
Sbjct:  830 SIRILLAIVAEENYELEQLDVKTAFLHGDLEEKIFMEAPEGYESQFKQGE--VCLLNKTMYGLKQSPRRWNQKFDSYMLEIGFERSPRNKCAYIKSLEDGSKVYLLI--YVDDMLVAARDMQVISELKQKLSEKFEMKDLGAAKRILGMEISRDRVKGTLTLS 988          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: Q02902_ARATH (Orf 3 (Fragment) n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q02902_ARATH)

HSP 1 Score: 110 bits (276), Expect = 2.350e-25
Identity = 61/167 (36.53%), Postives = 97/167 (58.08%), Query Frame = 0
Query:    2 STLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITDCS---RDEGGETDILVAVYVDDLVIAGR-RENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGRITH 164
            +++R + S+  + D ELE +DV  A+L+  +EEEL+++ P  F     +   V  L+KSLYGLKQ+ R WN     F++     RS  D     +  G +  + + +YVDD++IAG+ +  +++ K   S  F MKD+G  SR+LGI++ RDR NG + +S  R  H
Sbjct:  163 TSIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQPDGFISEDGENK-VCLLKKSLYGLKQSPRQWNKRFSRFMIDQNFIRSEHDACVYVKQAGEQDHLYLLLYVDDMLIAGKSKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRDRKNGVLRMSQARYIH 328          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 111 bits (277), Expect = 3.460e-25
Identity = 66/163 (40.49%), Postives = 100/163 (61.35%), Query Frame = 0
Query:    1 MSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITD-----CSRDEGGETDILVAVYVDDLVIAGRRENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITIS 158
            ++++R + +LAA HD+++  +DV  AYLNA +EEE+F+K PP  +   ++  +V  LR ++YGLKQ+ R W   +   L  +GL RS+ D        D+   T +++A+ VDD  IAG    V  FK   S+RF M DLG +  +LGIEVRRDR   T+++S
Sbjct: 1050 LASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKE-HWVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVT-LIIALSVDDTTIAGTNNAVLWFKTEISKRFEMTDLGEMHWILGIEVRRDRAARTLSLS 1210          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3H934_PHYRM1.890e-2739.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H9Y1_PHYRM1.030e-2640.12CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
H3H8P6_PHYRM1.700e-2638.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H7FCS8_9AGAM2.410e-2637.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A146H2N5_MYCCL3.960e-2638.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A409WVI7_9AGAR3.980e-2643.64Integrase catalytic domain-containing protein (Fra... [more]
H3H9D6_PHYRM5.080e-2639.51Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
Q9SZY0_ARATH1.350e-2538.65Putative retrotransposon n=1 Tax=Arabidopsis thali... [more]
Q02902_ARATH2.350e-2536.53Orf 3 (Fragment) n=3 Tax=Arabidopsis thaliana TaxI... [more]
A0A401GQU1_9APHY3.460e-2540.49Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..158
e-value: 2.0E-32
score: 112.7
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..147
NoneNo IPR availablePANTHERPTHR11439:SF267coord: 2..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18953contigH-paniculata_contig18953:257..986 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18953.4734.1mRNA_H-paniculata_contig18953.4734.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig18953 2..1368 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig18953.4734.1 ID=prot_H-paniculata_contig18953.4734.1|Name=mRNA_H-paniculata_contig18953.4734.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
MSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRD
IPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITDCSRDEGGETD
ILVAVYVDDLVIAGRRENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDR
PNGTITISHGRITHVRLDMN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like