mRNA_H-paniculata_contig18953.4734.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18953.4734.1
Unique NamemRNA_H-paniculata_contig18953.4734.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 191 bits (484), Expect = 6.100e-50
Identity = 118/299 (39.46%), Postives = 171/299 (57.19%), Query Frame = 1
Query:    7 PEAEKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITDCS---RDEGGETDILVAVYVDDLVIAGR-RENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGRITHVRLDMN*T*YRIRGIPSSTSYGGPMSRRLQYMQVHFSLSQYCA*PRHY 891
            P+A+ W+AA  EE  A  K    E  D    P GRK +  KW F+ K   DGS+ +YKARLVA+GF+QVEG D+ +T APV++ +++RTV +LAA +D +++ +DV  A+LN  ++EE+++  PP F     D   V RLRKSLYGLKQ  R W   +      +G ERS  D S   + E G   +++A+YVDD++IAG  R  +D FK   S+RF M DLGS   +LG+E+ RDR   T++IS  +     L+ +       G+ +      PM   L+  +    LS+    P+ Y
Sbjct:  999 PDADMWKAACAEELFAFAKA---ELYDEVEKPRGRKVVGCKWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFD---HDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFERSDADHSIFVKVENGVI-LIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILERH-------GMANCRPVSTPMEPNLKLEK----LSEATIDPKPY 1279          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA)

HSP 1 Score: 175 bits (444), Expect = 2.890e-48
Identity = 106/247 (42.91%), Postives = 156/247 (63.16%), Query Frame = 1
Query:   13 AEKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRD--IPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITD-CSRDEGGETDI-LVAVYVDDLVIAGRR-ENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGR 738
            A KW+ A E E  +L+ N T    D   LP GRKAI  KW F+ K K DGS+ +YKARLVA+G+SQ  G D+ ET  PV + +++R + SLAA+H+ EL+ +DV+ A+LN+ ++E++++++P   +          V +L+KSLYGLKQ  R WN T+D F++ IG  +S  D C   +  + DI LV++YVDDL++A    E +   K   S+RF+M DLG LS  LGIE+ R  P+G++ I   +
Sbjct:   57 ASKWKDACESEIKSLLDNKT---WDVVELPQGRKAIGCKWVFKVKEKADGSIDKYKARLVAKGYSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQDEDIILVSLYVDDLILASNSDEMMQTTKIALSKRFKMTDLGPLSYCLGIEIVRS-PSGSVFIHQSK 299          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM)

HSP 1 Score: 179 bits (455), Expect = 1.230e-47
Identity = 104/245 (42.45%), Postives = 154/245 (62.86%), Query Frame = 1
Query:   10 EAEKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIP-FVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITD----CSRDEGGETDILVAVYVDDLVIAGRRENV-DEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITI 726
            +A KW+ A + E  +L+KN T    D   LP GRKAI  +W F  K  + G + R+KARLVA+GFSQ  G D+ ET APV + +++R V SLAA++  +L  +DV  A+LN  ++E++++  P  +     D P  V +L++SLYGLKQ+ R WN T+DDF++ +G ++  +D      RD  G+  I VA+YVDDLV+A   + + D  KH  S+RF M DLG L   LG+E++ DR +G +T+
Sbjct:  294 DAVKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTV 531          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM)

HSP 1 Score: 173 bits (438), Expect = 1.490e-47
Identity = 101/245 (41.22%), Postives = 152/245 (62.04%), Query Frame = 1
Query:   10 EAEKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIP-FVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITD----CSRDEGGETDILVAVYVDDLVIAGRRENV-DEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITI 726
            +A KW+ A + E  +L+KN T    D   LP GRKAI  +W F  K  + G + R+KARLVA+GFSQ    D+ ET APV + +++R V SLAA++  +L  +DV  A+LN  ++E++++  P  +     D P  V +L++SLYGLKQ+ R WN T+DDF++ +G ++  +D      RD  G+  I VA+YVDDLV+A   + + +  KH  S+RF M DLG L   LG+E++ D  +G +T+
Sbjct:   35 DAVKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYDIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTV 272          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A165UZ38_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165UZ38_9AGAM)

HSP 1 Score: 173 bits (439), Expect = 2.050e-47
Identity = 101/244 (41.39%), Postives = 154/244 (63.11%), Query Frame = 1
Query:   10 EAEKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIPFVRRLRKSLYGLKQNRRNWNNTLDDFLVG-IGLERSITDCSRDEGGETD--ILVAVYVDDLVIAGRREN-VDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITIS 729
            E ++W  A ++E  +LV+NGT E  +    P GRKAI ++W F+ K   DGS+ RYK RLVA+GFSQ  G D+ ET AP  + ++LR + +LAA  D ELE VD+  AYLN ++EE+++++ P  F    +   +V RL+K LYGLKQ  R+W+  L++ L   +G  R   + S    G+ D  I++ V+VDD+ IA +    + + K +  Q F+++DLG  S +LG+E++RDR + T+TIS
Sbjct:   53 ERQQWLKAAQDEIQSLVENGTFELVE---CPPGRKAIGSRWVFKVKRNADGSIERYKGRLVAKGFSQRPGFDYNETFAPTPKWASLRAILALAALEDLELESVDISTAYLNGTLEEDVYMRQPKGFE--QKGPEWVWRLQKLLYGLKQAGRHWHEKLNEVLTEKLGFSRLTCEHSVWVYGKDDVCIIIPVFVDDMTIASKSSAAIQKVKDDLRQHFKLRDLGPTSWLLGVEIKRDRSSRTLTIS 291          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 182 bits (461), Expect = 6.660e-47
Identity = 108/245 (44.08%), Postives = 148/245 (60.41%), Query Frame = 1
Query:    7 PEAEKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITD-C--SRDEGGETDILVAVYVDDLVIAGRR-ENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITIS 729
            PE  +W+ AM+EE   + + GT   ED   LPAGR  I  KW F +K  EDG+++RYKARLVAQG+SQ+ G D+ ET APV R+ ++R    +AA  D E+  +DV  AYLN  +EEE++++ P  +   S     V RLRK+LYGLKQ+ R WN   D  L  IG  +   D C   R   G   I + V+VDDL+I     E++ E K      F +KDLG   +++GIE++RDR NGTI++S
Sbjct:  889 PEWAEWKKAMDEEMSVIKEMGTYTKED---LPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGR---VCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMTI-ITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLS 1126          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM)

HSP 1 Score: 171 bits (432), Expect = 9.010e-47
Identity = 100/240 (41.67%), Postives = 150/240 (62.50%), Query Frame = 1
Query:   25 RAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIP-FVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITD----CSRDEGGETDILVAVYVDDLVIAGRRENV-DEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITI 726
            + A + E  +L+KN T    D   LP GRKAI  +W F  K  + G + R+KARLVA+GFSQ  G D+ ET APV + +++R V SLAA++  +L  +DV  A+LN  ++E++++  P  +     D P  V +L++SLYGLKQ+ R WN T+DDF++ +G ++  +D      RD  G+  I VA+YVDDLV+A   + + +  KH  S+RF M DLG L   LG+E++ DR +G +T+
Sbjct:    1 KEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKDNQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTV 233          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A8H8J5M1_9AGAM (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8J5M1_9AGAM)

HSP 1 Score: 177 bits (449), Expect = 1.380e-46
Identity = 108/248 (43.55%), Postives = 143/248 (57.66%), Query Frame = 1
Query:    4 GPEAEKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITDC------SRDEGGETDILVAVYVDDLVIAGRRENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITIS 729
            GP+A KW+AAMEEE   L K GT +  +   LPAGRKA+  KW    K  E G   RYKARLVAQGFSQ  G DF +T APV R+ ++R + SLA ++D+++  +DV  AYL+A VEEEL++K  P F   +     V RL +SLYGLKQ  R WN   D  L  +G     TD         D G     ++A +VDDLV+   R N +   +     F M+DLG++   LGI   R+R  GT+T++
Sbjct:   84 GPDAAKWQAAMEEEVNTLKKMGTYQLVE---LPAGRKAMGNKWVLTIKRNELGEPIRYKARLVAQGFSQQPGIDFGQTFAPVVRLDSIRILASLANQNDWDIRQLDVHSAYLHAKVEEELYMKQIPHFEDGT---SLVLRLNRSLYGLKQAGRMWNQMFDSKLKQLGYLPCATDTCVYHRIDIDAGKPRVSILANHVDDLVVITSRNNTESVLNELLHEFEMRDLGAIRHYLGISFTRNREQGTLTLN 325          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A392MGQ0_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MGQ0_9FABA)

HSP 1 Score: 174 bits (440), Expect = 5.380e-46
Identity = 99/235 (42.13%), Postives = 148/235 (62.98%), Query Frame = 1
Query:   16 EKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITDCSRDEG------GETDILVAVYVDDLVIAGR-RENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRR 699
            ++WR AM +E  AL +N T E     RLP G+KA+  +W ++ K K  G V +YKARLVA+G++QVEG+DF ET APV +M+T+R + ++A    +EL  +DV  A+L+  ++EE+++++PP +    +++  V RLRKSLYGL+Q  RNW + L   LV  G +    +C  D        G T I+V +YVDDLV+ G   ++ ++FK   S+ F MKDLG L   LG+E+ R
Sbjct:  201 QEWREAMSQELKALEENKTWEMS---RLPKGKKAVGCRWVYKVKYKSTGEVEKYKARLVAKGYTQVEGDDFNETFAPVAKMTTVRCLLTVAVAKGWELHQMDVSNAFLHGELDEEVYMEVPPGYKVPDKEM--VCRLRKSLYGLRQASRNWYSKLSQALVKYGFQ----ECEADHSLFTYSHGSTFIVVLIYVDDLVVTGNDAKSCEKFKQYLSKCFHMKDLGELKYFLGLELAR 426          
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A1Y1IGG8_KLENI (Integrase catalytic domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IGG8_KLENI)

HSP 1 Score: 177 bits (450), Expect = 1.700e-45
Identity = 108/267 (40.45%), Postives = 159/267 (59.55%), Query Frame = 1
Query:    7 PEAEKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITDCS---RDEGGETDILVAVYVDDLVIAGRRENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGRITHVRL-DMN*T*YRIRGIP 795
            PEAE WR AM+EE+G+L +N T E  +P   P+G K I  KW F+ K  E+G + RYKARLV +GF Q +G DF E  APV+R  TLRT+ ++AA  D E++ +D+  A+LN  ++EE++++ P  F      +    RL+KSLYGLKQ  R W   L   + G+G E S  D +   R+   +    VAV+VDD ++ G++  V   K   ++ F ++DL  ++  LG+EV+RDR N T+T++  R     L D   +  R RG+P
Sbjct:  571 PEAELWRKAMDEEFGSLQENQTWELAEP---PSGVKPIPCKWAFKLKRDENGQINRYKARLVIKGFRQKKGVDFEEVFAPVSRHVTLRTLLAVAAVEDLEVDQLDIKTAFLNGELDEEIWMEQPELFQTGGPKLAC--RLKKSLYGLKQAPRVWYLKLAKEMEGLGFEPSAADPALFIRESESDGRAFVAVWVDDALVVGKKSVVGNVKAALARIFEVRDLRPVNYFLGMEVKRDRENRTVTLTQKRAAKDLLEDYGMSATRPRGVP 832          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1M2VV58_TRAPU6.100e-5039.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0WHK2_9STRA2.890e-4842.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H9Y1_PHYRM1.230e-4742.45CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
H3H8P6_PHYRM1.490e-4741.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A165UZ38_9AGAM2.050e-4741.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A284QR88_ARMOS6.660e-4744.08Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
H3H934_PHYRM9.010e-4741.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H8J5M1_9AGAM1.380e-4643.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A392MGQ0_9FABA5.380e-4642.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1Y1IGG8_KLENI1.700e-4540.45Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18953contigH-paniculata_contig18953:2..1368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue4e-23
Seed eggNOG ortholog164328.Phyra87462
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1150
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18953.4734.1prot_H-paniculata_contig18953.4734.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18953 257..986 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929454.6099205-UTR-H-paniculata_contig18953:1..2561622929454.6099205-UTR-H-paniculata_contig18953:1..256Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18953 2..256 +
1691480868.494581-UTR-H-paniculata_contig18953:1..2561691480868.494581-UTR-H-paniculata_contig18953:1..256Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18953 2..256 +
1622929454.6611927-UTR-H-paniculata_contig18953:986..13681622929454.6611927-UTR-H-paniculata_contig18953:986..1368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18953 987..1368 +
1691480868.5206716-UTR-H-paniculata_contig18953:986..13681691480868.5206716-UTR-H-paniculata_contig18953:986..1368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18953 987..1368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929454.6261199-CDS-H-paniculata_contig18953:256..7291622929454.6261199-CDS-H-paniculata_contig18953:256..729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18953 257..729 +
1691480868.5042815-CDS-H-paniculata_contig18953:256..7291691480868.5042815-CDS-H-paniculata_contig18953:256..729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18953 257..729 +
1622929454.6443946-CDS-H-paniculata_contig18953:946..9861622929454.6443946-CDS-H-paniculata_contig18953:946..986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18953 947..986 +
1691480868.5124295-CDS-H-paniculata_contig18953:946..9861691480868.5124295-CDS-H-paniculata_contig18953:946..986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18953 947..986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18953.4734.1

>prot_H-paniculata_contig18953.4734.1 ID=prot_H-paniculata_contig18953.4734.1|Name=mRNA_H-paniculata_contig18953.4734.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
MSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRD
IPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITDCSRDEGGETD
ILVAVYVDDLVIAGRRENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDR
PNGTITISHGRITHVRLDMN*
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mRNA from alignment at H-paniculata_contig18953:2..1368+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18953.4734.1 ID=mRNA_H-paniculata_contig18953.4734.1|Name=mRNA_H-paniculata_contig18953.4734.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1367bp|location=Sequence derived from alignment at H-paniculata_contig18953:2..1368+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGGTCCAGAGGCGGAAAAATGGCGCGCGGCAATGGAGGAAGAATGGGG GGCGTTGGTGAAAAATGGGACATAGGAAAGCGAAGACCCGGGGAGGTTAC CCGCAGGGCGGAAGGCGATTCGTACGAAATGGACTTTCGAGCGGAAATTG AAGGAGGACGGCAGCGTGGCACGCTACAAAGCGCGACTGGTGGCTCAAGG TTTTTCCCAGGTGGAGGGTGAAGATTTCTTTGAAACCAGTGCCCCCGTAA CTCGCATGTCGACGTTACGTACTGTTTTTAGCCTGGCCGCAGAACACGAT TTCGAATTAGAAGGCGTGGACGTAGATGTGGCGTATTTGAACGCCTCGGT AGAAGAAGAGCTGTTTATTAAGCTACCCCCCGAGTTTTCCCCTTTCTCCC GAGACATACCATTTGTGCGCCGCCTGCGTAAAAGCCTGTACGGCCTCAAG CAGAACCGCCGAAACTGGAATAACACTCTTGATGATTTTCTTGTTGGGAT AGGACTCGAACGTTCCATTACCGACTGTTCCCGCGACGAAGGGGGAGAGA CAGACATTCTGGTCGCCGTGTATGTTGACGACCTGGTCATTGCTGGCCGT CGTGAGAACGTAGACGAGTTCAAGCATAACAGAAGTCAGCGTTTTAGGAT GAAAGACTTGGGCTCTCTCTCACGCGTGTTGGGAATAGAAGTACGACGTG ACCGCCCTAATGGTACCATAACCATCTCGTAGGGTAGCTATATCCACGAG GTACACTAAAAAGATACGGTTTTTACGAGTGTCGAGGAGTACCCACCCCT GTAGAGGGAAACGTGAAGATTTCGGCACCCGAGTCGACCGATAAGCCTCC CGAACCGAAGTCACTTGGAGCTGTACTGTCGGACATAGGCGCAGGAGTAC AAGAAAGCAGCAGAGGGAGAAGTGGCAATTCGACTGATTACAGAGGCATG GTAGGATCACTCATGTACGCCTCGACATGAACTAGACATGATATAGAATA CGCGGTATACCAAGCAGCACGTCGTATGGAGGACCCATGTCAAGAAGACT TCAATACATGCAAGTGCATTTTTCGTTATCTCAGTACTGTGCCTGACCTC GGCATTACGTTCGGCGGTAAGAGTAATGGGTTCGGTCTGGAAGGATTCGC TGATGCCGATTGGGCGGAAGATGTCGAGGATCGAAAGTCCACAACAGGAT CCGTTTTCAAGCTGAACGGTGGTGCAATAAGTTGGTGCTCTAGGAAGCAA CAATTAGTCACGTGGCCCAGTACAGAGGCAGAGTACGTTACTGCAGGAGA AGGGGGAAAGGAGACGGTATATCTTAGGGAGTTACTAGGATCGATGGGTT TCGGATGCAGGGGGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig18953:2..1368+

>mRNA_H-paniculata_contig18953.4734.1 ID=mRNA_H-paniculata_contig18953.4734.1|Name=mRNA_H-paniculata_contig18953.4734.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig18953:2..1368+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACGTTACGTACTGTTTTTAGCCTGGCCGCAGAACACGATTTCGA
ATTAGAAGGCGTGGACGTAGATGTGGCGTATTTGAACGCCTCGGTAGAAG
AAGAGCTGTTTATTAAGCTACCCCCCGAGTTTTCCCCTTTCTCCCGAGAC
ATACCATTTGTGCGCCGCCTGCGTAAAAGCCTGTACGGCCTCAAGCAGAA
CCGCCGAAACTGGAATAACACTCTTGATGATTTTCTTGTTGGGATAGGAC
TCGAACGTTCCATTACCGACTGTTCCCGCGACGAAGGGGGAGAGACAGAC
ATTCTGGTCGCCGTGTATGTTGACGACCTGGTCATTGCTGGCCGTCGTGA
GAACGTAGACGAGTTCAAGCATAACAGAAGTCAGCGTTTTAGGATGAAAG
ACTTGGGCTCTCTCTCACGCGTGTTGGGAATAGAAGTACGACGTGACCGC
CCTAATGGTACCATAACCATCTCATGTCGACGTTACGTACTGTTTTTAGC
CTGGCCGCAGAACACGATTTCGAATTAGAAGGCGTGGACGTAGATGTGGC
GTATTTGAACGCCTCGGTAGAAGAAGAGCTGTTTATTAAGCTACCCCCCG
AGTTTTCCCCTTTCTCCCGAGACATACCATTTGTGCGCCGCCTGCGTAAA
AGCCTGTACGGCCTCAAGCAGAACCGCCGAAACTGGAATAACACTCTTGA
TGATTTTCTTGTTGGGATAGGACTCGAACGTTCCATTACCGACTGTTCCC
GCGACGAAGGGGGAGAGACAGACATTCTGGTCGCCGTGTATGTTGACGAC
CTGGTCATTGCTGGCCGTCGTGAGAACGTAGACGAGTTCAAGCATAACAG
AAGTCAGCGTTTTAGGATGAAAGACTTGGGCTCTCTCTCACGCGTGTTGG
GAATAGAAGTACGACGTGACCGCCCTAATGGTACCATAACCATCTCGCAT
GGTAGGATCACTCATGTACGCCTCGACATGAACTAGGCATGGTAGGATCA
CTCATGTACGCCTCGACATGAACTAG
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