mRNA_H-paniculata_contig18929.4728.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18929.4728.1
Unique NamemRNA_H-paniculata_contig18929.4728.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.350e-23
Identity = 58/107 (54.21%), Postives = 68/107 (63.55%), Query Frame = 3
Query:  300 DEYEVDVTIDSEWYTE----VFLATLKDKMPWLEKEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALV 608
            +EYE D TID+EWY +    V L  +K+KMPWL  + V V Q+GAS HT KG    LN  G   G  V+LVTQ AQSPDLNIN+LG F SLK RVW      +D LV
Sbjct:  258 EEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: A0A7S3GU94_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU94_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.310e-16
Identity = 53/154 (34.42%), Postives = 84/154 (54.55%), Query Frame = 3
Query:  366 KDKMPWLEKEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRV--WRERHRMLDALVEGVESMYRQYDADTLELVWKR----YNQVLNALGGQDLDIGH---TRSRKTQHEGRLDHLVPIDRAANDAA 800
            K+KMPW+    + +  +GA  HT  G   +++ T   +G ++ +V Q AQSPDLN+ +LG F SLK +V   ++    +D L++ V  +Y+QY  DTL+ +W      + +++ A+G       H   T SRK   EG   +L  ID  A +AA
Sbjct:    4 KEKMPWMRNRRLKIQHDGARPHTAGGLEDEVHATASTEGWHITMVRQRAQSPDLNVMDLGLFHSLKVQVIQLKDGAHNIDELIQKVRVVYQQYSRDTLDQIWGHQVACWTEIMRAMGSNQYKAPHHGGTVSRK--EEGSAVNLS-IDADAYNAA 154          
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: UPI00053F7236 (uncharacterized protein LOC104908485 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7236)

HSP 1 Score: 72.4 bits (176), Expect = 4.130e-11
Identity = 42/154 (27.27%), Postives = 79/154 (51.30%), Query Frame = 3
Query:  348 VFLATLKDKMPWLEKEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALVEGVESMYRQYDADTLELVWKRYN----QVLNALGGQDLDIGHTRSRKTQHEGRLDHLVPIDRAANDA 797
            VF A +      L KE +F+ Q+ A  H  +G          ++G  +KL+ Q AQSPDLN+ +LGFF ++++ +++   + +D L+E V+  Y ++D + ++  W + +    ++L   GG +    H    + +  G L   V  D+  ++A
Sbjct:  110 VFPAIMSKWPAGLSKE-IFIQQDNARAHI-QGNDEAFKAAATQNGFNIKLIQQPAQSPDLNVLDLGFFRAIQALMYQTFPKNIDELIENVQDAYDKFDPNVVKYTWLKLHWVMVEILKVKGGNNYKNPHHGKARLERLGLLPKNVQFDQIVDEA 261          
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: UPI000B8AF499 (uncharacterized protein LOC110800263 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AF499)

HSP 1 Score: 70.1 bits (170), Expect = 3.720e-10
Identity = 41/148 (27.70%), Postives = 71/148 (47.97%), Query Frame = 3
Query:  345 EVFLATLKDKMPWLEKEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALVEGVESMYRQYDADTLELVWKRYN----QVLNALGGQDLDIGHTRSRKTQHEGRLDHLVPI 776
            E  L  +K K P    +D+++ Q+ A  H      R+      +DG  ++LV Q AQSPD+NI +LGFF +++S  ++     + +L+E VE+ Y   D+  +   W        ++L   GG +    H   +K +  G L   + +
Sbjct:  125 EDLLPAIKSKWPSNACKDIWIQQDNARPHISPND-REFLEAATQDGFNIRLVNQPAQSPDMNILDLGFFRAIQSIQYKSFPDSVTSLIEAVENAYIALDSKAMNFTWMHLKYCMIEILQVQGGNNYKNPHKGKKKLERLGLLPTEIEV 271          
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: UPI000CD7E6F3 (uncharacterized protein LOC111896598 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD7E6F3)

HSP 1 Score: 68.6 bits (166), Expect = 1.390e-9
Identity = 42/153 (27.45%), Postives = 72/153 (47.06%), Query Frame = 3
Query:  312 VDVTIDSEWYTEVFLATLKDKMPWLEKEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALVEGVESMYRQYDADTLELVWKRYN----QVLNALGGQDLDIGHTRSRKTQHEGRL 758
            V+  +   W  E  L  +K K P      +F+ Q+ A  H D      L    R DG  ++L  Q   SPDLN+ +LGFF +++S   +E  R++D LV+ V++ + +  +  L  V+        +++   GG +  + H    + + EG L
Sbjct:  148 VNKEVTRSWLIEKVLPDIKTKWPQGHIGPIFIQQDNAKPHIDVNDSEFLEAASR-DGFDIRLCFQPPNSPDLNVLDLGFFQAIQSLQEQEVLRIIDELVDAVQTSFERMPSQQLNNVFLTLQTCMKEIIKVQGGNNYHVPHIGKCRLEREGNL 299          
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.800e-9
Identity = 36/124 (29.03%), Postives = 67/124 (54.03%), Query Frame = 3
Query:  399 VFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALVEGVESMYRQYDADTLELVW----KRYNQVLNALGGQDLDIGHTRSRKTQHEGRL 758
            +++ Q+GA  H   G   +L  +    G  +KLVTQ A SPDLNI +LGFF ++++  +R+  + +D  ++ V   + +  +D L+ VW    +R   +++  G   + + H R    + +G+L
Sbjct:  272 LYIQQDGARPHCTDGC-PELVASAASFGLNIKLVTQPANSPDLNILDLGFFAAIQTLQYRKCPKTIDEFLDAVHESFHELKSDCLDSVWLSLHRRMATIIDHYGDNTMKLEHMRKEALRKQGKL 394          
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: UPI00053F8527 (uncharacterized protein LOC104897330 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F8527)

HSP 1 Score: 68.6 bits (166), Expect = 2.500e-9
Identity = 40/146 (27.40%), Postives = 74/146 (50.68%), Query Frame = 3
Query:  381 WLE--KEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALVEGVESMYRQYDADTLELVWKRYN----QVLNALGGQDLDIGHTRSRKTQHEGRLDHLVPIDRAANDAA 800
            W E   +++++ Q+ A  H      + +     ++G  ++L+ Q AQSPDLN+ +LGFF ++++  ++   + LD L+  V+  Y  +D + L+  W +      ++L   GG +    H   RK +  G L   V +D+A  D A
Sbjct:  358 WPEGVSKEIYIQQDNARPHIHASDPQFI-AAATQNGFNIQLINQPAQSPDLNVLDLGFFRAIQALQYQSFPKNLDELILRVQDCYDFFDPEVLKYTWLQLQYVMVEILKCKGGNNFKNPHHAKRKLERLGLLPENVTVDQAVIDEA 502          
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: UPI00104066C4 (uncharacterized protein LOC114370211 n=1 Tax=Glycine soja TaxID=3848 RepID=UPI00104066C4)

HSP 1 Score: 66.2 bits (160), Expect = 6.580e-9
Identity = 42/157 (26.75%), Postives = 71/157 (45.22%), Query Frame = 3
Query:  324 IDSEWYTEVFLATLKDKMPWLEKED-VFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALVEGVESMYRQYDADTLELVWKRYN----QVLNALGGQDLDIGHTRSRKTQHEGRLDHLVPID 779
            I+ +W  E  +  ++   P  E    +F+ Q+ A  H D      +   G ++G  ++L+ Q A SPDLNI +LGFF +++S   + R   +D L+E V+  + +Y    +E VW        ++L   G     I      +   EG L   +  D
Sbjct:  116 INRKWLIEKVIPKIQSCWPREELGSAIFIQQDNARSHVDPND-EDIIRVGTQNGFNIRLMCQPANSPDLNILDLGFFSAIQSLQQKVRANSVDELIEAVKKSFDEYPTKKVEYVWLTLQLCMREILKVEGSNRYKIPDVNKARLDREGLLPTQIVCD 271          
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: UPI000B792FE7 (uncharacterized protein LOC110719242 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B792FE7)

HSP 1 Score: 65.5 bits (158), Expect = 8.480e-9
Identity = 37/120 (30.83%), Postives = 62/120 (51.67%), Query Frame = 3
Query:  354 LATLKDKMPWLEKEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALVEGVESMYRQYDADTLELVWKRYN----QVLNALGG 701
            L  ++ K P    +++++ Q+ A  H        L      DG  ++L+ Q AQSPDLNI +LGFF +++S  ++E  R L+ L++ +E+ Y  YD  +L   W        ++L   GG
Sbjct:  108 LPAIRLKWPLGACKEIWIQQDNARLHISPNDTNFLEAVTM-DGFNIRLINQPAQSPDLNILDLGFFRAVQSIQYKEFPRSLEELLQAIENAYNTYDPKSLNFTWLHTQYCMLEILKVNGG 226          
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: UPI000B797FC7 (uncharacterized protein LOC110699849 n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B797FC7)

HSP 1 Score: 65.1 bits (157), Expect = 2.660e-8
Identity = 40/147 (27.21%), Postives = 71/147 (48.30%), Query Frame = 3
Query:  354 LATLKDKMPWLEKEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALVEGVESMYRQYDADTLELVWKRYN----QVLNALGGQDLDIGHTRSRKTQHEGRLDHLVPIDR 782
            +  +K K P    +DV +  + A  H        +  T   +G  ++ + Q AQSPDLN+ +LG F S++S  ++   + LD LV+ V+  Y  +D +  + +W        ++L A GG    I H   +K ++ G L  +V + +
Sbjct:  193 IPAIKSKWPESLAKDVVIQWDNARPHQVPRDAEFIEAT-TTNGFNIQFIFQPAQSPDLNVLDLGLFRSIQSLQYQFFPKDLDELVQKVKDSYDTFDPEVNKYIWVTLQNCMIKILKAKGGNKYKIPHMNKKKLENIGILPEIVVVQK 338          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE3.350e-2354.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3GU94_9STRA1.310e-1634.42Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
UPI00053F72364.130e-1127.27uncharacterized protein LOC104908485 n=1 Tax=Beta ... [more]
UPI000B8AF4993.720e-1027.70uncharacterized protein LOC110800263 n=1 Tax=Spina... [more]
UPI000CD7E6F31.390e-927.45uncharacterized protein LOC111896598 n=1 Tax=Lactu... [more]
A0A6G0X8U9_9STRA1.800e-929.03Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI00053F85272.500e-927.40uncharacterized protein LOC104897330 n=1 Tax=Beta ... [more]
UPI00104066C46.580e-926.75uncharacterized protein LOC114370211 n=1 Tax=Glyci... [more]
UPI000B792FE78.480e-930.83uncharacterized protein LOC110719242 n=1 Tax=Cheno... [more]
UPI000B797FC72.660e-827.21uncharacterized protein LOC110699849 n=2 Tax=Cheno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18929contigH-paniculata_contig18929:971..1872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue3e-11
Seed eggNOG ortholog161934.XP_010667659.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size878
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18929.4728.1prot_H-paniculata_contig18929.4728.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18929 1040..1474 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929453.66974-UTR-H-paniculata_contig18929:970..10391622929453.66974-UTR-H-paniculata_contig18929:970..1039Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18929 971..1039 -
1691480868.0737212-UTR-H-paniculata_contig18929:970..10391691480868.0737212-UTR-H-paniculata_contig18929:970..1039Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18929 971..1039 -
1622929453.7039502-UTR-H-paniculata_contig18929:1474..15981622929453.7039502-UTR-H-paniculata_contig18929:1474..1598Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18929 1475..1598 -
1691480868.0911195-UTR-H-paniculata_contig18929:1474..15981691480868.0911195-UTR-H-paniculata_contig18929:1474..1598Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18929 1475..1598 -
1622929453.7227452-UTR-H-paniculata_contig18929:1622..18721622929453.7227452-UTR-H-paniculata_contig18929:1622..1872Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18929 1623..1872 -
1691480868.099031-UTR-H-paniculata_contig18929:1622..18721691480868.099031-UTR-H-paniculata_contig18929:1622..1872Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18929 1623..1872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929453.688362-CDS-H-paniculata_contig18929:1039..14741622929453.688362-CDS-H-paniculata_contig18929:1039..1474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18929 1040..1474 -
1691480868.0831795-CDS-H-paniculata_contig18929:1039..14741691480868.0831795-CDS-H-paniculata_contig18929:1039..1474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18929 1040..1474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18929.4728.1

>prot_H-paniculata_contig18929.4728.1 ID=prot_H-paniculata_contig18929.4728.1|Name=mRNA_H-paniculata_contig18929.4728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
MPWLEKEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPD
LNINELGFFVSLKSRVWRERHRMLDALVEGVESMYRQYDADTLELVWKRY
NQVLNALGGQDLDIGHTRSRKTQHEGRLDHLVPIDRAANDAAFN*
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mRNA from alignment at H-paniculata_contig18929:971..1872-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18929.4728.1 ID=mRNA_H-paniculata_contig18929.4728.1|Name=mRNA_H-paniculata_contig18929.4728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=902bp|location=Sequence derived from alignment at H-paniculata_contig18929:971..1872- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATTTTGTAACCTATATTTAGCAATTTAGTTTCGTGAAAAATACAGGAT ATTGGTCGAAAGCCTGTACATTCAGCTTGCAGTAGACATCTTCAAAATGT TGCTTGAATTCGAAATGGTCTTCTTAATACCGGGTATTTCAGCACGTTTT TTTTTCGGAAATGGCAGATTTTGCAAAACAGTTGTATAGGCCGAAATCGG CCGAAACTCCTTGTTTTCTATTGTTTCGCGAGCTACTTTTTCGCATGTGC GTAGAGTTTTCAAACGAGGAATAGCGCAAACGAAACCCCTCAATCATACC AAGCTGCTCGTCGCGAAAGGGGTGACGAGTACGAGGTCGACGTCACCATC GACAGTGAGTGGTACACGGAGGTTTTCCTCGCCACACTCAAGGATAAGAT GCCATGGTTGGAGAAGGAGGATGTGTTCGTGCATCAGAATGGCGCGAGCC AGCACACGGACAAGGGCACGTTGAGGAAGCTAAACCTGACAGGGAGAGAG GACGGATGTTATGTCAAGCTCGTAACGCAGCTGGCGCAGTCTCCCGATCT CAATATTAACGAATTGGGGTTTTTCGTATCCCTGAAATCTAGAGTGTGGA GGGAACGCCACCGTATGTTAGACGCCCTTGTAGAGGGGGTTGAGAGCATG TACCGCCAGTATGACGCGGATACTCTAGAGCTGGTTTGGAAGCGGTACAA CCAAGTGTTGAACGCGCTGGGGGGGCAAGATTTAGACATTGGGCATACCA GGAGCAGGAAAACGCAGCATGAGGGGCGTTTAGACCACTTGGTCCCCATT GACAGAGCCGCTAACGACGCAGCCTTCAATTAGTGGATTGATGGGGAGGA TGGCAGTGATGAAAAATGAATTTTATTGTACTACATGGTAAGAAACGCCA AG
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Coding sequence (CDS) from alignment at H-paniculata_contig18929:971..1872-

>mRNA_H-paniculata_contig18929.4728.1 ID=mRNA_H-paniculata_contig18929.4728.1|Name=mRNA_H-paniculata_contig18929.4728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig18929:971..1872- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCATGGTTGGAGAAGGAGGATGTGTTCGTGCATCAGAATGGCGCGAG
CCAGCACACGGACAAGGGCACGTTGAGGAAGCTAAACCTGACAGGGAGAG
AGGACGGATGTTATGTCAAGCTCGTAACGCAGCTGGCGCAGTCTCCCGAT
CTCAATATTAACGAATTGGGGTTTTTCGTATCCCTGAAATCTAGAGTGTG
GAGGGAACGCCACCGTATGTTAGACGCCCTTGTAGAGGGGGTTGAGAGCA
TGTACCGCCAGTATGACGCGGATACTCTAGAGCTGGTTTGGAAGCGGTAC
AACCAAGTGTTGAACGCGCTGGGGGGGCAAGATTTAGACATTGGGCATAC
CAGGAGCAGGAAAACGCAGCATGAGGGGCGTTTAGACCACTTGGTCCCCA
TTGACAGAGCCGCTAACGACGCAGCCTTCAATTAGATGCCATGGTTGGAG
AAGGAGGATGTGTTCGTGCATCAGAATGGCGCGAGCCAGCACACGGACAA
GGGCACGTTGAGGAAGCTAAACCTGACAGGGAGAGAGGACGGATGTTATG
TCAAGCTCGTAACGCAGCTGGCGCAGTCTCCCGATCTCAATATTAACGAA
TTGGGGTTTTTCGTATCCCTGAAATCTAGAGTGTGGAGGGAACGCCACCG
TATGTTAGACGCCCTTGTAGAGGGGGTTGAGAGCATGTACCGCCAGTATG
ACGCGGATACTCTAGAGCTGGTTTGGAAGCGGTACAACCAAGTGTTGAAC
GCGCTGGGGGGGCAAGATTTAGACATTGGGCATACCAGGAGCAGGAAAAC
GCAGCATGAGGGGCGTTTAGACCACTTGGTCCCCATTGACAGAGCCGCTA
ACGACGCAGCCTTCAATTAG
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