mRNA_H-paniculata_contig18929.4728.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE) HSP 1 Score: 107 bits (267), Expect = 3.350e-23 Identity = 58/107 (54.21%), Postives = 68/107 (63.55%), Query Frame = 3
Query: 300 DEYEVDVTIDSEWYTE----VFLATLKDKMPWLEKEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALV 608
+EYE D TID+EWY + V L +K+KMPWL + V V Q+GAS HT KG LN G G V+LVTQ AQSPDLNIN+LG F SLK RVW +D LV
Sbjct: 258 EEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: A0A7S3GU94_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU94_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.310e-16 Identity = 53/154 (34.42%), Postives = 84/154 (54.55%), Query Frame = 3
Query: 366 KDKMPWLEKEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRV--WRERHRMLDALVEGVESMYRQYDADTLELVWKR----YNQVLNALGGQDLDIGH---TRSRKTQHEGRLDHLVPIDRAANDAA 800
K+KMPW+ + + +GA HT G +++ T +G ++ +V Q AQSPDLN+ +LG F SLK +V ++ +D L++ V +Y+QY DTL+ +W + +++ A+G H T SRK EG +L ID A +AA
Sbjct: 4 KEKMPWMRNRRLKIQHDGARPHTAGGLEDEVHATASTEGWHITMVRQRAQSPDLNVMDLGLFHSLKVQVIQLKDGAHNIDELIQKVRVVYQQYSRDTLDQIWGHQVACWTEIMRAMGSNQYKAPHHGGTVSRK--EEGSAVNLS-IDADAYNAA 154
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: UPI00053F7236 (uncharacterized protein LOC104908485 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7236) HSP 1 Score: 72.4 bits (176), Expect = 4.130e-11 Identity = 42/154 (27.27%), Postives = 79/154 (51.30%), Query Frame = 3
Query: 348 VFLATLKDKMPWLEKEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALVEGVESMYRQYDADTLELVWKRYN----QVLNALGGQDLDIGHTRSRKTQHEGRLDHLVPIDRAANDA 797
VF A + L KE +F+ Q+ A H +G ++G +KL+ Q AQSPDLN+ +LGFF ++++ +++ + +D L+E V+ Y ++D + ++ W + + ++L GG + H + + G L V D+ ++A
Sbjct: 110 VFPAIMSKWPAGLSKE-IFIQQDNARAHI-QGNDEAFKAAATQNGFNIKLIQQPAQSPDLNVLDLGFFRAIQALMYQTFPKNIDELIENVQDAYDKFDPNVVKYTWLKLHWVMVEILKVKGGNNYKNPHHGKARLERLGLLPKNVQFDQIVDEA 261
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: UPI000B8AF499 (uncharacterized protein LOC110800263 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AF499) HSP 1 Score: 70.1 bits (170), Expect = 3.720e-10 Identity = 41/148 (27.70%), Postives = 71/148 (47.97%), Query Frame = 3
Query: 345 EVFLATLKDKMPWLEKEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALVEGVESMYRQYDADTLELVWKRYN----QVLNALGGQDLDIGHTRSRKTQHEGRLDHLVPI 776
E L +K K P +D+++ Q+ A H R+ +DG ++LV Q AQSPD+NI +LGFF +++S ++ + +L+E VE+ Y D+ + W ++L GG + H +K + G L + +
Sbjct: 125 EDLLPAIKSKWPSNACKDIWIQQDNARPHISPND-REFLEAATQDGFNIRLVNQPAQSPDMNILDLGFFRAIQSIQYKSFPDSVTSLIEAVENAYIALDSKAMNFTWMHLKYCMIEILQVQGGNNYKNPHKGKKKLERLGLLPTEIEV 271
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: UPI000CD7E6F3 (uncharacterized protein LOC111896598 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD7E6F3) HSP 1 Score: 68.6 bits (166), Expect = 1.390e-9 Identity = 42/153 (27.45%), Postives = 72/153 (47.06%), Query Frame = 3
Query: 312 VDVTIDSEWYTEVFLATLKDKMPWLEKEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALVEGVESMYRQYDADTLELVWKRYN----QVLNALGGQDLDIGHTRSRKTQHEGRL 758
V+ + W E L +K K P +F+ Q+ A H D L R DG ++L Q SPDLN+ +LGFF +++S +E R++D LV+ V++ + + + L V+ +++ GG + + H + + EG L
Sbjct: 148 VNKEVTRSWLIEKVLPDIKTKWPQGHIGPIFIQQDNAKPHIDVNDSEFLEAASR-DGFDIRLCFQPPNSPDLNVLDLGFFQAIQSLQEQEVLRIIDELVDAVQTSFERMPSQQLNNVFLTLQTCMKEIIKVQGGNNYHVPHIGKCRLEREGNL 299
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 1.800e-9 Identity = 36/124 (29.03%), Postives = 67/124 (54.03%), Query Frame = 3
Query: 399 VFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALVEGVESMYRQYDADTLELVW----KRYNQVLNALGGQDLDIGHTRSRKTQHEGRL 758
+++ Q+GA H G +L + G +KLVTQ A SPDLNI +LGFF ++++ +R+ + +D ++ V + + +D L+ VW +R +++ G + + H R + +G+L
Sbjct: 272 LYIQQDGARPHCTDGC-PELVASAASFGLNIKLVTQPANSPDLNILDLGFFAAIQTLQYRKCPKTIDEFLDAVHESFHELKSDCLDSVWLSLHRRMATIIDHYGDNTMKLEHMRKEALRKQGKL 394
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: UPI00053F8527 (uncharacterized protein LOC104897330 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F8527) HSP 1 Score: 68.6 bits (166), Expect = 2.500e-9 Identity = 40/146 (27.40%), Postives = 74/146 (50.68%), Query Frame = 3
Query: 381 WLE--KEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALVEGVESMYRQYDADTLELVWKRYN----QVLNALGGQDLDIGHTRSRKTQHEGRLDHLVPIDRAANDAA 800
W E +++++ Q+ A H + + ++G ++L+ Q AQSPDLN+ +LGFF ++++ ++ + LD L+ V+ Y +D + L+ W + ++L GG + H RK + G L V +D+A D A
Sbjct: 358 WPEGVSKEIYIQQDNARPHIHASDPQFI-AAATQNGFNIQLINQPAQSPDLNVLDLGFFRAIQALQYQSFPKNLDELILRVQDCYDFFDPEVLKYTWLQLQYVMVEILKCKGGNNFKNPHHAKRKLERLGLLPENVTVDQAVIDEA 502
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: UPI00104066C4 (uncharacterized protein LOC114370211 n=1 Tax=Glycine soja TaxID=3848 RepID=UPI00104066C4) HSP 1 Score: 66.2 bits (160), Expect = 6.580e-9 Identity = 42/157 (26.75%), Postives = 71/157 (45.22%), Query Frame = 3
Query: 324 IDSEWYTEVFLATLKDKMPWLEKED-VFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALVEGVESMYRQYDADTLELVWKRYN----QVLNALGGQDLDIGHTRSRKTQHEGRLDHLVPID 779
I+ +W E + ++ P E +F+ Q+ A H D + G ++G ++L+ Q A SPDLNI +LGFF +++S + R +D L+E V+ + +Y +E VW ++L G I + EG L + D
Sbjct: 116 INRKWLIEKVIPKIQSCWPREELGSAIFIQQDNARSHVDPND-EDIIRVGTQNGFNIRLMCQPANSPDLNILDLGFFSAIQSLQQKVRANSVDELIEAVKKSFDEYPTKKVEYVWLTLQLCMREILKVEGSNRYKIPDVNKARLDREGLLPTQIVCD 271
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: UPI000B792FE7 (uncharacterized protein LOC110719242 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B792FE7) HSP 1 Score: 65.5 bits (158), Expect = 8.480e-9 Identity = 37/120 (30.83%), Postives = 62/120 (51.67%), Query Frame = 3
Query: 354 LATLKDKMPWLEKEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALVEGVESMYRQYDADTLELVWKRYN----QVLNALGG 701
L ++ K P +++++ Q+ A H L DG ++L+ Q AQSPDLNI +LGFF +++S ++E R L+ L++ +E+ Y YD +L W ++L GG
Sbjct: 108 LPAIRLKWPLGACKEIWIQQDNARLHISPNDTNFLEAVTM-DGFNIRLINQPAQSPDLNILDLGFFRAVQSIQYKEFPRSLEELLQAIENAYNTYDPKSLNFTWLHTQYCMLEILKVNGG 226
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Match: UPI000B797FC7 (uncharacterized protein LOC110699849 n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B797FC7) HSP 1 Score: 65.1 bits (157), Expect = 2.660e-8 Identity = 40/147 (27.21%), Postives = 71/147 (48.30%), Query Frame = 3
Query: 354 LATLKDKMPWLEKEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDLNINELGFFVSLKSRVWRERHRMLDALVEGVESMYRQYDADTLELVWKRYN----QVLNALGGQDLDIGHTRSRKTQHEGRLDHLVPIDR 782
+ +K K P +DV + + A H + T +G ++ + Q AQSPDLN+ +LG F S++S ++ + LD LV+ V+ Y +D + + +W ++L A GG I H +K ++ G L +V + +
Sbjct: 193 IPAIKSKWPESLAKDVVIQWDNARPHQVPRDAEFIEAT-TTNGFNIQFIFQPAQSPDLNVLDLGLFRSIQSLQYQFFPKDLDELVQKVKDSYDTFDPEVNKYIWVTLQNCMIKILKAKGGNKYKIPHMNKKKLENIGILPEIVVVQK 338 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18929.4728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18929.4728.1 >prot_H-paniculata_contig18929.4728.1 ID=prot_H-paniculata_contig18929.4728.1|Name=mRNA_H-paniculata_contig18929.4728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp MPWLEKEDVFVHQNGASQHTDKGTLRKLNLTGREDGCYVKLVTQLAQSPDback to top mRNA from alignment at H-paniculata_contig18929:971..1872- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18929.4728.1 ID=mRNA_H-paniculata_contig18929.4728.1|Name=mRNA_H-paniculata_contig18929.4728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=902bp|location=Sequence derived from alignment at H-paniculata_contig18929:971..1872- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18929:971..1872- >mRNA_H-paniculata_contig18929.4728.1 ID=mRNA_H-paniculata_contig18929.4728.1|Name=mRNA_H-paniculata_contig18929.4728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig18929:971..1872- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |