mRNA_H-paniculata_contig1890.4720.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1890.4720.1
Unique NamemRNA_H-paniculata_contig1890.4720.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: D7FQE5_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQE5_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 3.830e-114
Identity = 174/189 (92.06%), Postives = 178/189 (94.18%), Query Frame = 1 
Query:   70 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAASNKVGLPPAGGLNAQGRIRPPGGSAGGPS----GMRTR 624
            MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQIL+AINDQNRLHAASNKVGLPP+GG++A GR  P GG  GG S    GMRTR
Sbjct:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILLAINDQNRLHAASNKVGLPPSGGISAHGR--PSGGVGGGGSSGIPGMRTR 187
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BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: A0A835ZDS3_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDS3_9STRA)

HSP 1 Score: 280 bits (717), Expect = 2.310e-91
Identity = 134/157 (85.35%), Postives = 149/157 (94.90%), Query Frame = 1 
Query:   70 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAASNKVGL 540
            MI+ V+IVNNHGKPRLVKFY+TV  E+AQ+SVI+RIFQQVAQRPD+FCNYLEG IPEWGEGTKLIYRHYATLYF+FAVDSQESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDE+IMGGMVLETNIN +L A+NDQ++LHAAS KV L
Sbjct:    1 MIKAVVIVNNHGKPRLVKFYKTVTDEDAQQSVIRRIFQQVAQRPDNFCNYLEGSIPEWGEGTKLIYRHYATLYFIFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEMIMGGMVLETNINAVLSAVNDQSKLHAASMKVQL 157
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BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: W7T2Y9_9STRA (AP complex subunit sigma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Y9_9STRA)

HSP 1 Score: 276 bits (707), Expect = 7.290e-90
Identity = 134/154 (87.01%), Postives = 143/154 (92.86%), Query Frame = 1 
Query:   70 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAASNK 531
            MIRGVIIVNNHG+PRLVK YQ+V+GEEAQ+SVI+++FQQVAQRPDSFCNYL+G IPEWGEG KLIYRHYATLYFVFAVD QESDLGILDL+QVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIM GMVLETNI  IL  INDQNRLHA S K
Sbjct:    1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQK 154
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BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: A0A6S8ZKR8_9STRA (AP complex subunit sigma n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZKR8_9STRA)

HSP 1 Score: 270 bits (691), Expect = 1.860e-87
Identity = 127/152 (83.55%), Postives = 141/152 (92.76%), Query Frame = 1 
Query:   70 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAAS 525
            MI+G++IVNNHGKPRLVKFYQ+V  EE Q+SVI+R+FQQVAQRPDSFCNYLEGIIPEWG   KLIYRHYATLYFVFAVDSQESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDEI+MGGMVLETNIN +L AI DQ ++H +S
Sbjct:    1 MIKGILIVNNHGKPRLVKFYQSVTSEETQQSVIRRVFQQVAQRPDSFCNYLEGIIPEWGSNIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIVMGGMVLETNINSVLQAIGDQTKMHKSS 152
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BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: A0A7R9U773_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U773_9STRA)

HSP 1 Score: 270 bits (690), Expect = 4.550e-87
Identity = 141/184 (76.63%), Postives = 154/184 (83.70%), Query Frame = 1 
Query:   67 NMIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAASNKVGLPPAGGLNAQGRIRP-PGGSAGGPSGM 615
            NMI+ VI+VNNHGK RLVKFYQ V    AQ+SVI+R+FQQV QRPDSFCNYLEG +PEWG+  KLIYRHYATLYFVFAVDSQESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDEIIM GMVLETNI  IL AINDQ+R+H ASNK   P  G  NA GR RP P G+A  P G+
Sbjct:   13 NMIKAVIVVNNHGKARLVKFYQNVDSVSAQQSVIRRVFQQVGQRPDSFCNYLEGSVPEWGDDVKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIIMAGMVLETNIVNILQAINDQHRMHMASNKA-QPGTG--NAVGRGRPSPHGAARPPPGL 193
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BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: A0A7S2P852_9STRA (AP complex subunit sigma n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P852_9STRA)

HSP 1 Score: 263 bits (671), Expect = 1.980e-84
Identity = 127/169 (75.15%), Postives = 145/169 (85.80%), Query Frame = 1 
Query:   70 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAASNKVGLPPAGGLNAQGRI 576
            MI+GVIIVNN GKPRL KFYQ+V  EE Q+ VI+R+F+Q++ RPD+FCNYLEGI+PEWG   KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDKCFENVCELDLIFHSDKVHYVLDEI+MGGMVLETNI  IL AI DQ +LHAAS K  +    GL+ + +I
Sbjct:    1 MIKGVIIVNNQGKPRLAKFYQSVTSEEIQQRVIRRVFEQISSRPDNFCNYLEGIVPEWGSNIKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIVMGGMVLETNIASILQAIQDQGKLHAASLKAKVDKTDGLSHREKI 169
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BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: B5YNE9_THAPS (AP complex subunit sigma n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNE9_THAPS)

HSP 1 Score: 262 bits (669), Expect = 3.710e-84
Identity = 126/154 (81.82%), Postives = 139/154 (90.26%), Query Frame = 1 
Query:   70 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAASNK 531
            MI+G+IIVNN GKPRLVKFYQ V GE+ Q+SVI+R+FQQV+ RPDSFCNYLEG +PEWGE  KLIYRHYATLYFVFAVDSQESDLGILDL+QVFVEALDK FENVCELDLIFHSD+VHY+LDEI+MGGMVLETNIN IL AINDQ R+H  S K
Sbjct:    1 MIKGIIIVNNSGKPRLVKFYQNVFGEQRQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGENIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDRVHYILDEIVMGGMVLETNINSILQAINDQERMHNESMK 154
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BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: A0A8J9T0F8_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T0F8_PHATR)

HSP 1 Score: 257 bits (656), Expect = 1.470e-82
Identity = 120/149 (80.54%), Postives = 135/149 (90.60%), Query Frame = 1 
Query:   70 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLH 516
            MI+G+IIVNNHGKPRLVKFYQ V  E  Q+SVI+R+FQQVA RPDSFCNYLEGI+PEWG+  KLIYRHYATLYFVFAVD QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHY+LDEI+MGGMVLETNI  +L +I DQ ++H
Sbjct:    1 MIKGIIIVNNHGKPRLVKFYQNVESEALQQSVIRRVFQQVAARPDSFCNYLEGIVPEWGDHIKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYILDEIVMGGMVLETNIQGVLQSIKDQGKIH 149
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BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: A0A1Z5JTJ4_FISSO (AP complex subunit sigma n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTJ4_FISSO)

HSP 1 Score: 258 bits (658), Expect = 2.020e-82
Identity = 121/152 (79.61%), Postives = 139/152 (91.45%), Query Frame = 1 
Query:   70 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAAS 525
            MI+G+IIVNNHGKPRLVKFYQ+V  E  Q+SVI+R+FQQVA RPDSFCNYLEG IPEWG+  KLIYRHYATL+FVFAVDSQESDLGILDL+QVFVE+LD+CFE+VCELDLIFHSD+VHYVLDEI+MGGMVLETNI+ +L A+ DQ+RLH  S
Sbjct:    1 MIKGIIIVNNHGKPRLVKFYQSVESESLQQSVIRRVFQQVAARPDSFCNYLEGAIPEWGDNIKLIYRHYATLFFVFAVDSQESDLGILDLIQVFVESLDRCFESVCELDLIFHSDRVHYVLDEIVMGGMVLETNIHSVLQAVKDQDRLHKDS 152
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BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: K0SBT8_THAOC (Clat_adaptor_s domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBT8_THAOC)

HSP 1 Score: 261 bits (666), Expect = 2.970e-81
Identity = 127/159 (79.87%), Postives = 141/159 (88.68%), Query Frame = 1 
Query:   67 NMIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAASNKVGLP 543
            NMI+G+IIVNN GKPRLVKFYQ V GEE Q+SVI+R+FQQV+ RPDSFCNYLEG +PEWGE  KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDK FENVCELDLIFHSDKVH++LDEI+MGGMVLETNIN IL AI+DQ R+H  S K   P
Sbjct:  173 NMIKGIIIVNNSGKPRLVKFYQNVFGEEKQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGEKCKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDKVHHILDEIVMGGMVLETNINAILQAISDQERMHKDSMKTKGP 331
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQE5_ECTSI3.830e-11492.06AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835ZDS3_9STRA2.310e-9185.35AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
W7T2Y9_9STRA7.290e-9087.01AP complex subunit sigma n=2 Tax=Monodopsidaceae T... [more]
A0A6S8ZKR8_9STRA1.860e-8783.55AP complex subunit sigma n=1 Tax=Ditylum brightwel... [more]
A0A7R9U773_9STRA4.550e-8776.63Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2P852_9STRA1.980e-8475.15AP complex subunit sigma n=1 Tax=Leptocylindrus da... [more]
B5YNE9_THAPS3.710e-8481.82AP complex subunit sigma n=1 Tax=Thalassiosira pse... [more]
A0A8J9T0F8_PHATR1.470e-8280.54Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A1Z5JTJ4_FISSO2.020e-8279.61AP complex subunit sigma n=2 Tax=Fistulifera solar... [more]
K0SBT8_THAOC2.970e-8179.87Clat_adaptor_s domain-containing protein n=2 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1890contigH-paniculata_contig1890:12534..18949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.8
Seed ortholog evalue3.2e-90
Seed eggNOG ortholog2880.D7FQE5
Preferred nameAP3S1
KEGG koko:K10436,ko:K12399
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006605,GO:0006623,GO:0006725,GO:0006726,GO:0006727,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007033,GO:0007034,GO:0007040,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008055,GO:0008088,GO:0008089,GO:0008104,GO:0008150,GO:0008152,GO:0008286,GO:0008565,GO:0009058,GO:0009405,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010970,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0018130,GO:0019438,GO:0019748,GO:0023052,GO:0030117,GO:0030119,GO:0030123,GO:0030133,GO:0030659,GO:0030705,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033060,GO:0033365,GO:0034613,GO:0042221,GO:0042440,GO:0042441,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043434,GO:0043473,GO:0043474,GO:0044237,GO:0044249,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045184,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046907,GO:0047496,GO:0048066,GO:0048069,GO:0048072,GO:0048193,GO:0048475,GO:0048489,GO:0048490,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051716,GO:0065007,GO:0070727,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072384,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0097479,GO:0097480,GO:0097708,GO:0098791,GO:0098796,GO:0098930,GO:0099003,GO:0099111,GO:0099514,GO:0099517,GO:0099518,GO:1901360,GO:1901362,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701
EggNOG free text desc.protein transport
EggNOG OGsCOG5030@1,KOG0936@2759
Ec32 ortholog descriptionClathrin assembly complex, small subunit
Ec32 orthologEc-01_006410.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131,ko04812
Exons4
Model size1104
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1890.4720.1prot_H-paniculata_contig1890.4720.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1890 12603..18472 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929452.6287303-UTR-H-paniculata_contig1890:12533..126021622929452.6287303-UTR-H-paniculata_contig1890:12533..12602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1890 12534..12602 +
1691480867.5634673-UTR-H-paniculata_contig1890:12533..126021691480867.5634673-UTR-H-paniculata_contig1890:12533..12602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1890 12534..12602 +
1622929452.7168438-UTR-H-paniculata_contig1890:18472..189491622929452.7168438-UTR-H-paniculata_contig1890:18472..18949Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1890 18473..18949 +
1691480867.63865-UTR-H-paniculata_contig1890:18472..189491691480867.63865-UTR-H-paniculata_contig1890:18472..18949Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1890 18473..18949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929452.6488185-CDS-H-paniculata_contig1890:12602..126711622929452.6488185-CDS-H-paniculata_contig1890:12602..12671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1890 12603..12671 +
1691480867.5807364-CDS-H-paniculata_contig1890:12602..126711691480867.5807364-CDS-H-paniculata_contig1890:12602..12671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1890 12603..12671 +
1622929452.665479-CDS-H-paniculata_contig1890:17204..174121622929452.665479-CDS-H-paniculata_contig1890:17204..17412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1890 17205..17412 +
1691480867.5925093-CDS-H-paniculata_contig1890:17204..174121691480867.5925093-CDS-H-paniculata_contig1890:17204..17412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1890 17205..17412 +
1622929452.681856-CDS-H-paniculata_contig1890:17727..177981622929452.681856-CDS-H-paniculata_contig1890:17727..17798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1890 17728..17798 +
1691480867.6068792-CDS-H-paniculata_contig1890:17727..177981691480867.6068792-CDS-H-paniculata_contig1890:17727..17798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1890 17728..17798 +
1622929452.6986814-CDS-H-paniculata_contig1890:18262..184721622929452.6986814-CDS-H-paniculata_contig1890:18262..18472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1890 18263..18472 +
1691480867.627019-CDS-H-paniculata_contig1890:18262..184721691480867.627019-CDS-H-paniculata_contig1890:18262..18472Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1890 18263..18472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1890.4720.1

>prot_H-paniculata_contig1890.4720.1 ID=prot_H-paniculata_contig1890.4720.1|Name=mRNA_H-paniculata_contig1890.4720.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNY
LEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDK
CFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHA
ASNKVGLPPAGGLNAQGRIRPPGGSAGGPSGMRTR*
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mRNA from alignment at H-paniculata_contig1890:12534..18949+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1890.4720.1 ID=mRNA_H-paniculata_contig1890.4720.1|Name=mRNA_H-paniculata_contig1890.4720.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6416bp|location=Sequence derived from alignment at H-paniculata_contig1890:12534..18949+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCACCGGAACGGTGGCACTGCGGTGAGAGGTGGTGGCCAGAGGGCTGGA
CAAACAGGGCAACGGAAATATGATTCGAGGCGTGATTATTGTGAATAATC
ATGGAAAGCCACGGCTTGTCAAGTTCTATCAAACAGTTGTGAGTGAAGGT
TTGTCGTCGATCACATTTTTATATTTTGTCTCGCTTTTCTGTTTGGCACA
TTCCTCCGCCGAGTGTTACTTTGACCACTCCCGTCAAGGTCACAGCTAGC
CACATGCCGTGTGATGTCATACCCCCACAAGGTTGAGCTTATCAAAATGC
TATCGCTTACCTACCGTGACTTCAATTCTTCTCTAAATAACATGTATTCA
GTCGGTACGGTGGAGGAAAAAGTGTGCCGCGCGTATCATGAACAGCAGGA
CTATATGATGAGTCGGTTCGACCCGTGACCAACTGTTGGTAAATTACGAA
TTGATCTCTTGTTTTAGTGTGTGGCAACAGACACCACCCATCTGTTTGAC
TTCCCTTCTTACCATATGCACGAAAGATAAATCTGACACGAGGGACACAT
GAGATTGGACATCGCTCCGCCGATGTCCCTTTTATCAGGGTGCACACCTC
TGTGACCGTTCTTTCGGTAGTTGTGGTGTGTTGTGAAACGATTAAAATCG
TCTCGTATATTCTACACACCTGGCACGCTTTCCTACTGACACACCACAAC
AACTTCATTATCGTCAATTACAATTACTGTCGAGGATGTCCTACAGTAAT
AATCTTTCGCTTGCTGTATATATTACACCCTCCCCAATGGAAGTGGTTGC
ATAGAAAATGAGAAAGGAGGATGCAAATAGGTCTCCATGCCCCCACCCCG
TCAAGGGTCAAGGGCAAAGGATTAACAGGGCACTAAACGTAGCACAGCAC
TACTAGGGAGGAATGACGGACGTTGGACGTGAATGCTCAGAAGCGGCTGA
TGGTTGCCAGCAGCACAAATGAGATCCAGGGCGGTCTCCAAGCCAGATCA
GAACTATCACCACCCCCGTCCCCAACGCCAGCATCAACAAAATGATCATA
GTAGCCTATTACGAGTCAACTACGATATCCCTCAACACGCTAAAGGTCCC
ACTAAAACGTGAAGACTCTACCTTATCGGATTAGGTTCTCCACCTTTCTC
TAGGGATGAAACCATTTCATCCCATCATCAGACACGCTTATCAGAGAGGC
AACGTATTAGCCTGTTGTGGGCAGACTACGATACCGCTGAGCATGTGAAA
AATATCACAAAAATGTCCACACCCAACCCTGTCCGTTTAGAACCCCCCCC
TGCTGGCGCCCGAGATGAAACTGTGTCATCCCTCGCCAAACGTGCTCACG
GGGAGGAATGTTATCCATCGCATTAGCCTGTTGCGGGCGGAATACGATGC
CCTTGAACACGTGAACGGTACGGCAAAACATCGACGCCCTACCCTATCAG
TCTAGAACCCTCCCCCGCCCCCCCCCGCCCGCACCGCGGCCCGTGATGAA
ATCGTTTCATCCCTGCCTCAGGACGCCCCCAAATCTCTAGGGGGGCGCGC
GGGGGGGGGGGGGGGGGGGGTTTCCCCCCCCATTGCCCCTTTGGGAACCC
ACCCAATGCCCCTTGAACAAATAAAGGGTGAACCTGAACGTTCTCCCCCC
TTTTCTTTCCCTTTAGACCCCCTCCCTCCCCCTTCGGTACACAATTGTTT
CATCCCCTCCTCAAACACGCCCCCGAATCTCCAGGAGGGGGGGGAGGGGG
GGAGTTATCCATGCCCGACTGCTGCTCGACTGCTGAAACTTTCATCAGCC
GTTCACGTCCCGGTTTTTGGCCCAATTCTTGCGAGAGTTATGTCTATCCC
CCCTAATTCGATGGCGTAGAGTCCATTGCCGTCGTACAAAATTCGATACG
CTTGCTGAAACACCACGATTTCGACAACTTCAAAATCTAAATTGCCATTT
TCTAGTCAAAGAAGAGCATTTTTCGATTTTGCAACTCGAATTCGAGGTCC
AGTGGATCTCCAGTCGGATCTCTTTTTTATCAGTATGATAAAAATTCGCG
ACCCAAGGTCCTGGATGACTGCGGATGTATCCCCCAGTTCATCTCGGATT
CATGGTTGATCTGTTTGACTTGGTTGTATTGATGTGTACTGCCCATATCT
GCCCCACTACCACACTACCGGAACCCGATTTGGCACACGAAGGGCTAGCT
ACTGTAAAGATCACGCTGTGTCTTTTCTAGGCACTTTGAACCAATTTAAA
ATAGTGGAAAAACGTTTTTTTCCGCAGTTTTAAATTGGTTTATAGTGGCT
AGATGAGACACAGCCTAACCTTAGGCTAGAACCCTTTGCCTGGCCCTCGA
TTTGCCTAGACAATAAAATCAAAACAGTAACCGTGGCTAAAAGAATCATA
GAGGCTAGGATTAAGTCGCCTCCAGTGGTTTGTTTCACATCGTAGGTGCT
ATGAATATATTCAGGCTCCATATCCCATTACTCCCAAGGGTTTGTCCAAT
ATTTACAGCACATATTATGTGTATATATTAACCGTTGTGGCACCCAGCCG
TTTACGATCCCTACATCGCTGCTAGACAAACAGGCCAAAACCCTTTCCGA
ATTTATTTGTGACAAACGCCCACGATATGATACTGGGATATGAAGTTCTA
CAGACACTACAGGCGGTCCTGCAGTTGTTATTTAACATGCACAGAGAGGA
GTTACGGGAGTTGGCATGGTTTCGAGTTACACGACAGCAGCACATGATCG
AAACGTGAAGTACAAATTACATCATGAGTGACTGACTGTATGCTGCAGAA
AGCCGCACGCCAAGACGTTTATTCAAAAACATCACACCATGGGTCTCACG
CCGCTATTCCGACACCCGTAGACAGCACAGACACTGCAGATAGGAAAATG
AAGAAAGAATTGGCGCGCAACTGCGCATGTGTCGTTGTTGATGAAATCAT
TGGCCGCAGTCATGGTGTCGGGGTAATGAGTCGTTGCAGTTGACCCAGTC
AGGGGCACAAATGTGGGACAACGCAATAATGACAGGCCTTAGAGTTAGCG
TTGGGAGGGTTGGAGGATCAAGATCATGGTCATTGGAAGTAATTAGAGAG
CGTTAATAAATCATGAAGGCGCGAGGCTGTGTAGTCGCGCAAACAGGCAG
GCACGCAATGTCTGCAAAGTTATGCGATACACGTGTGTACAAGTGCTGTA
GTACGTATAGGGCGGTAGCATTGCTCCATCAAGTGGTTGCGGTGACTAGC
GGGTCGTCGAAGCAGAAAGAGCATTCCGAAATAGTATCATAGTTGTGTAT
GCATGCATTCGCAGCTGCTGAAAGCAAGAAGAGGCATGGGTGGAACGGGA
ATGTTCATGACTGTCGTTATGGCCATTTCTGTCACTCAGCAAAATGGTCC
CCGCACCCTGATGAAGCACACGAGAAGTACGGTCATGACCAAAGATTACT
CCAACTACAGTACTATGTGTCATCTCCGCCAGACGCGCTTCCCTGCTTTA
TCTCTACTAAATACTGTCTCTGCTACCTCTTTCTCACACGGCATCATGCC
ACCTCGAGCAAGGTGGGGCAGTGTAGGTTGGCAACTCAAGCTTAGTGCGG
CACTAGAACATAAGGCGACATTGATTTGGCAACATATTTATTCTTGTAGT
TTTCAAAAGTTGGCGGGTTTTTTTTTGTGTAATGTGAATTGAAGTTCGGA
ATATACAAAAGGCAAGTAACTTTGATGGGGTGCACATGCCCGTCCATGTT
GATAGCGCCCAGAGGATCGGTGGAAACCAGAACGGGCCGGACAACATCGA
GCATGTAACTCTGATACCGAGCGAGGTGGACTCTTTTGATGAATAAGGCA
GCAAGGACACATGGTAATAGCCGCAACGACGGTCAGTAGAGCGACGAGTC
CACCTGCATTGTAGACATTTTGATGACCTCCTCGTGAGCGATCCCCCCTG
CGCGCCCATCTGACCGTCGTCGTACATGGAGGTCATTTTCAGGGGTGTTA
AGGCTATTTCAATAAATGGTACGGTAAATGATTTCCTCGATGTCGTGTCG
GTAAATGGTATTCGGCTTATCGGTAGCACGGTACGGTACATTTCTCGGTA
TTTGCGCGGTAAGCGGGATTCGTGCTTTTTCGCTAGAGGTACGGTACGAT
ATTTTGTCTTCTCGTTATCATGCAGTACGGTGTCTGTTACTTGGCGCAGT
TTTTCGGTGCCCAAGCCCTGCACAAGCGCAATAGATAAATGCAGTCATAA
AACCGGTCCGGGTAGTAAACGGTGTGTATGGAGAGTTCCACAAGGACGCG
ACTTATTTATTCCAAGAGCCCGTTCCAACGGCTGATAAATATCGTAGTTT
GAAAGCACGATATCGGTACTGTAACGGGGTTTCACAGTACGGTAAATGGT
ATATGGCTCTCACACCGCGGTATTCACGTTTTGCTGTGCCGTACACGGTA
ACGGTAAACGGGAAATCGAGTTGTTCACGGTATTAGTACCGATTCCGAAT
ACTACGCATACCGCGGTGTTTTTACCTCGGTATTATTACCGAGAGCACCC
TTGGTGCGTTTCTTGGACTATCGAAGATTGACTCTACTCCCAATTGGCTA
TACACATACTTATACGTCCATACCGTACATTTCTAACGCCAATCCCAACT
CAAACCCAAACGCTTCATTAGGTAGGAGAGGAAGCGCAGAAGAGTGTGAT
ACAGCGCATATTCCAGCAGGTGGCGCAGCGACCCGACTCTTTTTGCAACT
ATTTGGAAGGTATCATCCCGGAGTGGGGAGAGGGTACGAAGCTCATCTAC
CGTCATTACGCCACGTTGTACTTCGTTTTCGCCGTGGACTCTCAGGAGAG
CGATCTCGGCATCCTCGATCTCGTCCAGGGTGAGTGAGACGGTTTCGTTG
TTGGGATGTGTCTATTTGACGGTCGCCACTTTGTAGCATTTGAACTAAGG
GTGCCATGTACGTCCTACTCACCTTGACAATTTGGCGTCGAATGTCGGGG
TGCCATCGTAAGAAATACGTGTTATTTCTGCTCCTCTCACAAGCTCGTTT
TGATGCCCTACTGTCTAGTACTATGCAGTCGTGTGCTTCTGCCACCCATC
TGTGTGCTCAACATATCTTACGGCGTTCTTTTACATGCTCCGCTCCTCCT
TGCGACAACCATCCTCTTGCTTTTGTGTTGTGCCCCACTGTCAGTTTTTG
TGGAAGCACTGGACAAGTGCTTCGAGAACGTGTGCGAGCTGGACCTTATC
TTCCACTCGGACAAGGTACACAACTACACAACATTCCCTACTCAGGAGAG
GTCGTTAAGTTACTCACTGCATCTCTACCTCGACAGGGGTGCAGTATATA
ACTTGAGGGTCGGTATGCTTGTTGATCGTAAGCCCGTTTATTGCCATCCA
AAGCATCGAAAACGATTAGTCCGATACGGAATCCAATGTATGCCGCCCCT
TCCATCACTTTCTTTGTTAGTGAGCACTCTGGGGCTCTTTTATATTTTAG
TTGACGTGACGGGACAGGTGACGGTGTAGAGAGTAGGCTAGTTTCACTCC
CCCAATAGTCTGGGTAGCATATTTGGAGGGAACAAACAATACCAGCGTTG
GAAAGGCCCAGGATAACTATATAGAGCTCTGTACGTATTTTTGTCGATTA
TCGTCGTTGTTCGTGCTACAAGGAAAGTATTGTAACCGAGCATCCTATTC
CCTGTATCTTGCTCCCTGTCGTGTTCAAGGTCCACTACGTGCTGGACGAG
ATCATCATGGGAGGCATGGTATTGGAGACCAACATTAACCAGATTTTGAT
AGCGATCAACGACCAGAATCGTCTGCACGCTGCATCGAACAAGGTTGGAC
TGCCTCCAGCGGGCGGCTTGAATGCGCAAGGGAGGATTAGACCGCCGGGA
GGCAGCGCGGGTGGTCCCTCCGGCATGCGGACACGATGACCCATTTGATC
GTACATCGTTCGTTGCGTGACAATCCATTTACTGTTGGGAGGTGGAAGGC
AGGCTGTACGATATTGTGTCCTGTCGCTATTGTGATCTCCTGGCCGGGTT
CGTAAATTTCACCCATGGAAACGTATTTGCATTCTAGATATTAAATCTCG
CGTGTTCGAGAATGGTGCGCTTTCCGACGCCGATTTTCATCCCTTGCTCA
ACCTCAAGCGCGACGTTTATGAAAACACCAAGGATTTGGGTGATACCATG
CGCGACCTACTCGGTTGAGTTCACGGATGTGCGTTTTGCTCCCGCTGTAT
GCCCTGTTTCAGACTCTTGCTACGGCACATGGATAATGAATTGGTGGTAA
CATTGGAAATCTCGCGTCCCGGCTTGCAGGCGATATTGAAAATACTGTTT
AACTTCAAGTTGCATATGCGAGCACAGCAGAAACGACCTGGGTGATGTAA
CGGTGCGCAATAAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1890:12534..18949+

>mRNA_H-paniculata_contig1890.4720.1 ID=mRNA_H-paniculata_contig1890.4720.1|Name=mRNA_H-paniculata_contig1890.4720.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig1890:12534..18949+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTCGAGGCGTGATTATTGTGAATAATCATGGAAAGCCACGGCTTGT
CAAGTTCTATCAAACAGTTATGATTCGAGGCGTGATTATTGTGAATAATC
ATGGAAAGCCACGGCTTGTCAAGTTCTATCAAACAGTTGTAGGAGAGGAA
GCGCAGAAGAGTGTGATACAGCGCATATTCCAGCAGGTGGCGCAGCGACC
CGACTCTTTTTGCAACTATTTGGAAGGTATCATCCCGGAGTGGGGAGAGG
GTACGAAGCTCATCTACCGTCATTACGCCACGTTGTACTTCGTTTTCGCC
GTGGACTCTCAGGAGAGCGATCTCGGCATCCTCGATCTCGTCCAGGGTAG
GAGAGGAAGCGCAGAAGAGTGTGATACAGCGCATATTCCAGCAGGTGGCG
CAGCGACCCGACTCTTTTTGCAACTATTTGGAAGGTATCATCCCGGAGTG
GGGAGAGGGTACGAAGCTCATCTACCGTCATTACGCCACGTTGTACTTCG
TTTTCGCCGTGGACTCTCAGGAGAGCGATCTCGGCATCCTCGATCTCGTC
CAGGTTTTTGTGGAAGCACTGGACAAGTGCTTCGAGAACGTGTGCGAGCT
GGACCTTATCTTCCACTCGGACAAGTTTTTGTGGAAGCACTGGACAAGTG
CTTCGAGAACGTGTGCGAGCTGGACCTTATCTTCCACTCGGACAAGGTCC
ACTACGTGCTGGACGAGATCATCATGGGAGGCATGGTATTGGAGACCAAC
ATTAACCAGATTTTGATAGCGATCAACGACCAGAATCGTCTGCACGCTGC
ATCGAACAAGGTTGGACTGCCTCCAGCGGGCGGCTTGAATGCGCAAGGGA
GGATTAGACCGCCGGGAGGCAGCGCGGGTGGTCCCTCCGGCATGCGGACA
CGATGAGTCCACTACGTGCTGGACGAGATCATCATGGGAGGCATGGTATT
GGAGACCAACATTAACCAGATTTTGATAGCGATCAACGACCAGAATCGTC
TGCACGCTGCATCGAACAAGGTTGGACTGCCTCCAGCGGGCGGCTTGAAT
GCGCAAGGGAGGATTAGACCGCCGGGAGGCAGCGCGGGTGGTCCCTCCGG
CATGCGGACACGATGA
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