prot_H-paniculata_contig1890.4720.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1890.4720.1
Unique Nameprot_H-paniculata_contig1890.4720.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length186
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: D7FQE5_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQE5_ECTSI)

HSP 1 Score: 337 bits (865), Expect = 1.080e-116
Identity = 174/189 (92.06%), Postives = 178/189 (94.18%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAASNKVGLPPAGGLNAQGRIRPPGGSAGGPS----GMRTR 185
            MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQIL+AINDQNRLHAASNKVGLPP+GG++A GR  P GG  GG S    GMRTR
Sbjct:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILLAINDQNRLHAASNKVGLPPSGGISAHGR--PSGGVGGGGSSGIPGMRTR 187
[Close]
BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: A0A835ZDS3_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDS3_9STRA)

HSP 1 Score: 281 bits (718), Expect = 2.070e-94
Identity = 134/157 (85.35%), Postives = 149/157 (94.90%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAASNKVGL 157
            MI+ V+IVNNHGKPRLVKFY+TV  E+AQ+SVI+RIFQQVAQRPD+FCNYLEG IPEWGEGTKLIYRHYATLYF+FAVDSQESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDE+IMGGMVLETNIN +L A+NDQ++LHAAS KV L
Sbjct:    1 MIKAVVIVNNHGKPRLVKFYKTVTDEDAQQSVIRRIFQQVAQRPDNFCNYLEGSIPEWGEGTKLIYRHYATLYFIFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEMIMGGMVLETNINAVLSAVNDQSKLHAASMKVQL 157
[Close]
BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: W7T2Y9_9STRA (AP complex subunit sigma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Y9_9STRA)

HSP 1 Score: 277 bits (708), Expect = 6.670e-93
Identity = 134/154 (87.01%), Postives = 143/154 (92.86%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAASNK 154
            MIRGVIIVNNHG+PRLVK YQ+V+GEEAQ+SVI+++FQQVAQRPDSFCNYL+G IPEWGEG KLIYRHYATLYFVFAVD QESDLGILDL+QVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIM GMVLETNI  IL  INDQNRLHA S K
Sbjct:    1 MIRGVIIVNNHGRPRLVKLYQSVIGEEAQQSVIRKVFQQVAQRPDSFCNYLDGSIPEWGEGVKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMAGMVLETNIIHILQVINDQNRLHAQSQK 154
[Close]
BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: A0A6S8ZKR8_9STRA (AP complex subunit sigma n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZKR8_9STRA)

HSP 1 Score: 271 bits (692), Expect = 1.760e-90
Identity = 127/152 (83.55%), Postives = 141/152 (92.76%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAAS 152
            MI+G++IVNNHGKPRLVKFYQ+V  EE Q+SVI+R+FQQVAQRPDSFCNYLEGIIPEWG   KLIYRHYATLYFVFAVDSQESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDEI+MGGMVLETNIN +L AI DQ ++H +S
Sbjct:    1 MIKGILIVNNHGKPRLVKFYQSVTSEETQQSVIRRVFQQVAQRPDSFCNYLEGIIPEWGSNIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIVMGGMVLETNINSVLQAIGDQTKMHKSS 152
[Close]
BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: A0A7R9U773_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U773_9STRA)

HSP 1 Score: 266 bits (680), Expect = 2.040e-88
Identity = 140/183 (76.50%), Postives = 153/183 (83.61%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAASNKVGLPPAGGLNAQGRIRP-PGGSAGGPSGM 182
            MI+ VI+VNNHGK RLVKFYQ V    AQ+SVI+R+FQQV QRPDSFCNYLEG +PEWG+  KLIYRHYATLYFVFAVDSQESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHYVLDEIIM GMVLETNI  IL AINDQ+R+H ASNK   P  G  NA GR RP P G+A  P G+
Sbjct:   14 MIKAVIVVNNHGKARLVKFYQNVDSVSAQQSVIRRVFQQVGQRPDSFCNYLEGSVPEWGDDVKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYVLDEIIMAGMVLETNIVNILQAINDQHRMHMASNKA-QPGTG--NAVGRGRPSPHGAARPPPGL 193
[Close]
BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: A0A7S2P852_9STRA (AP complex subunit sigma n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P852_9STRA)

HSP 1 Score: 263 bits (672), Expect = 1.960e-87
Identity = 127/169 (75.15%), Postives = 145/169 (85.80%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAASNKVGLPPAGGLNAQGRI 169
            MI+GVIIVNN GKPRL KFYQ+V  EE Q+ VI+R+F+Q++ RPD+FCNYLEGI+PEWG   KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDKCFENVCELDLIFHSDKVHYVLDEI+MGGMVLETNI  IL AI DQ +LHAAS K  +    GL+ + +I
Sbjct:    1 MIKGVIIVNNQGKPRLAKFYQSVTSEEIQQRVIRRVFEQISSRPDNFCNYLEGIVPEWGSNIKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIVMGGMVLETNIASILQAIQDQGKLHAASLKAKVDKTDGLSHREKI 169
[Close]
BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: B5YNE9_THAPS (AP complex subunit sigma n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNE9_THAPS)

HSP 1 Score: 262 bits (670), Expect = 3.690e-87
Identity = 126/154 (81.82%), Postives = 139/154 (90.26%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAASNK 154
            MI+G+IIVNN GKPRLVKFYQ V GE+ Q+SVI+R+FQQV+ RPDSFCNYLEG +PEWGE  KLIYRHYATLYFVFAVDSQESDLGILDL+QVFVEALDK FENVCELDLIFHSD+VHY+LDEI+MGGMVLETNIN IL AINDQ R+H  S K
Sbjct:    1 MIKGIIIVNNSGKPRLVKFYQNVFGEQRQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGENIKLIYRHYATLYFVFAVDSQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDRVHYILDEIVMGGMVLETNINSILQAINDQERMHNESMK 154
[Close]
BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: A0A8J9T0F8_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T0F8_PHATR)

HSP 1 Score: 257 bits (657), Expect = 1.510e-85
Identity = 120/149 (80.54%), Postives = 135/149 (90.60%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLH 149
            MI+G+IIVNNHGKPRLVKFYQ V  E  Q+SVI+R+FQQVA RPDSFCNYLEGI+PEWG+  KLIYRHYATLYFVFAVD QESDLGILDL+QVFVEALDKCFENVCELDLIFHSD+VHY+LDEI+MGGMVLETNI  +L +I DQ ++H
Sbjct:    1 MIKGIIIVNNHGKPRLVKFYQNVESEALQQSVIRRVFQQVAARPDSFCNYLEGIVPEWGDHIKLIYRHYATLYFVFAVDQQESDLGILDLIQVFVEALDKCFENVCELDLIFHSDRVHYILDEIVMGGMVLETNIQGVLQSIKDQGKIH 149
[Close]
BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: A0A1Z5JTJ4_FISSO (AP complex subunit sigma n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTJ4_FISSO)

HSP 1 Score: 258 bits (659), Expect = 2.070e-85
Identity = 121/152 (79.61%), Postives = 139/152 (91.45%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAAS 152
            MI+G+IIVNNHGKPRLVKFYQ+V  E  Q+SVI+R+FQQVA RPDSFCNYLEG IPEWG+  KLIYRHYATL+FVFAVDSQESDLGILDL+QVFVE+LD+CFE+VCELDLIFHSD+VHYVLDEI+MGGMVLETNI+ +L A+ DQ+RLH  S
Sbjct:    1 MIKGIIIVNNHGKPRLVKFYQSVESESLQQSVIRRVFQQVAARPDSFCNYLEGAIPEWGDNIKLIYRHYATLFFVFAVDSQESDLGILDLIQVFVESLDRCFESVCELDLIFHSDRVHYVLDEIVMGGMVLETNIHSVLQAVKDQDRLHKDS 152
[Close]
BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Match: K0SBT8_THAOC (Clat_adaptor_s domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBT8_THAOC)

HSP 1 Score: 259 bits (661), Expect = 2.410e-83
Identity = 126/158 (79.75%), Postives = 140/158 (88.61%), Query Frame = 0 
Query:    1 MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNYLEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDKCFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHAASNKVGLP 158
            MI+G+IIVNN GKPRLVKFYQ V GEE Q+SVI+R+FQQV+ RPDSFCNYLEG +PEWGE  KLIYRHYATLYFVFAVD+QESDLGILDL+QVFVEALDK FENVCELDLIFHSDKVH++LDEI+MGGMVLETNIN IL AI+DQ R+H  S K   P
Sbjct:  174 MIKGIIIVNNSGKPRLVKFYQNVFGEEKQQSVIRRVFQQVSTRPDSFCNYLEGSVPEWGEKCKLIYRHYATLYFVFAVDAQESDLGILDLIQVFVEALDKRFENVCELDLIFHSDKVHHILDEIVMGGMVLETNINAILQAISDQERMHKDSMKTKGP 331
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1890.4720.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQE5_ECTSI1.080e-11692.06AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835ZDS3_9STRA2.070e-9485.35AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
W7T2Y9_9STRA6.670e-9387.01AP complex subunit sigma n=2 Tax=Monodopsidaceae T... [more]
A0A6S8ZKR8_9STRA1.760e-9083.55AP complex subunit sigma n=1 Tax=Ditylum brightwel... [more]
A0A7R9U773_9STRA2.040e-8876.50Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2P852_9STRA1.960e-8775.15AP complex subunit sigma n=1 Tax=Leptocylindrus da... [more]
B5YNE9_THAPS3.690e-8781.82AP complex subunit sigma n=1 Tax=Thalassiosira pse... [more]
A0A8J9T0F8_PHATR1.510e-8580.54Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A1Z5JTJ4_FISSO2.070e-8579.61AP complex subunit sigma n=2 Tax=Fistulifera solar... [more]
K0SBT8_THAOC2.410e-8379.75Clat_adaptor_s domain-containing protein n=2 Tax=T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016635Adaptor protein complex, sigma subunitPIRSFPIRSF015588AP_complex_sigmacoord: 1..156
e-value: 5.9E-52
score: 173.5
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 1..171
NoneNo IPR availableGENE3D3.30.450.60coord: 1..157
e-value: 1.6E-58
score: 198.8
NoneNo IPR availablePANTHERPTHR11753:SF10AP-3 COMPLEX SUBUNIT SIGMA-2coord: 1..171
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 1..147
e-value: 1.0E-46
score: 158.4
IPR000804Clathrin adaptor complex, small chainPROSITEPS00989CLAT_ADAPTOR_Scoord: 64..74
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 1..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1890contigH-paniculata_contig1890:12603..18472 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1890.4720.1mRNA_H-paniculata_contig1890.4720.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1890 12534..18949 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1890.4720.1 ID=prot_H-paniculata_contig1890.4720.1|Name=mRNA_H-paniculata_contig1890.4720.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
MIRGVIIVNNHGKPRLVKFYQTVVGEEAQKSVIQRIFQQVAQRPDSFCNY
LEGIIPEWGEGTKLIYRHYATLYFVFAVDSQESDLGILDLVQVFVEALDK
CFENVCELDLIFHSDKVHYVLDEIIMGGMVLETNINQILIAINDQNRLHA
ASNKVGLPPAGGLNAQGRIRPPGGSAGGPSGMRTR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su
IPR000804Clathrin_sm-chain_CS
IPR011012Longin-like_dom_sf