mRNA_H-paniculata_contig18849.4703.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: D8LIJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ2_ECTSI) HSP 1 Score: 199 bits (505), Expect = 8.980e-57 Identity = 96/117 (82.05%), Postives = 103/117 (88.03%), Query Frame = 1
Query: 1 YVMWMGAGEYDGNGTFGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIGEGSDGRGYLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
+VMWMGAGE NGTFGLS VATS YPDGPFN RRTLYPDGNETHDQTVFIG +DGRGYLARTYYAE EYVLP AVMQP WSSV+ DGS+D+GLSYHRAFYS +YDDYHDIY+QR
Sbjct: 1703 FVMWMGAGE--SNGTFGLSAVATSGYPDGPFNLRRTLYPDGNETHDQTVFIG--ADGRGYLARTYYAEIEYVLPGAVMQPVWSSVEHPDGSVDFGLSYHRAFYSPDYDDYHDIYIQR 1815
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: A0A6H5JBJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ3_9PHAE) HSP 1 Score: 183 bits (464), Expect = 3.000e-51 Identity = 96/159 (60.38%), Postives = 103/159 (64.78%), Query Frame = 1
Query: 1 YVMWMGAGEYDGNGTFGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIG------------------------------------------EGSDGRGYLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
+VMWMGAGE NGTFGLS VATS YPDGPF RRTLYPDGNETHDQTVFIG G+DGRGYLARTYYAE EYVLP AVMQP WSSV+ DGS+D+GLSYHRAFYS +YDDYHDIY+QR
Sbjct: 1727 FVMWMGAGE--SNGTFGLSAVATSGYPDGPFTLRRTLYPDGNETHDQTVFIGGLRYSHHAMLAGCFTLPSTVRSPFQKKGSKHHTRLSYVPPPKAGADGRGYLARTYYAEIEYVLPGAVMQPVWSSVEHPDGSVDFGLSYHRAFYSPDYDDYHDIYIQR 1883
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: A0A835YHE6_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHE6_9STRA) HSP 1 Score: 151 bits (381), Expect = 4.610e-40 Identity = 75/117 (64.10%), Postives = 88/117 (75.21%), Query Frame = 1
Query: 1 YVMWMGAGEYDGNGTFGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIGEGSDGRGYLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
YVMW G E +GN T GL+GVA + +P GPF F+R+ YPDGN T DQTV+ + +DG G LARTYY TEYV+P VMQP W SVK DGS D+GLSYHRAFY+ YDDYHDI+LQR
Sbjct: 1669 YVMW-GTVE-NGNRTMGLAGVAVADHPGGPFRFQRSFYPDGNATFDQTVY--QDADGHGVLARTYYDTTEYVMPGPVMQPIWESVKAPDGSTDFGLSYHRAFYNSSYDDYHDIFLQR 1781
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: A0A7S4DA20_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DA20_HETAK) HSP 1 Score: 142 bits (359), Expect = 4.430e-38 Identity = 68/117 (58.12%), Postives = 85/117 (72.65%), Query Frame = 1
Query: 1 YVMWMGAGEYDGNGTFGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIGEGSDGRGYLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
+VMWMG N T G++ VA + +P GPF+F R+ YPDGN+T+DQTV G GR YLARTYY + EYVLP+ +M P W SVK +GS+ +GL+YHRAFY EYD+YHDIYLQR
Sbjct: 115 WVMWMGLDN--ANRTLGMAAVAVADHPGGPFHFVRSFYPDGNQTYDQTVMAAPG--GRAYLARTYYQDVEYVLPEPLMMPIWESVKDENGSVLFGLNYHRAFYEPEYDNYHDIYLQR 227
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: B5YLR0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YLR0_THAPS) HSP 1 Score: 145 bits (365), Expect = 6.560e-38 Identity = 73/119 (61.34%), Postives = 89/119 (74.79%), Query Frame = 1
Query: 1 YVMWMGAGEYDGNGT--FGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIGEGSDGRGYLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
YVMWM NGT G++GVATS Y +GPF+F R+LYPDGN+T DQT+F + DG YL +TYY T+YV+P+AVMQPTW SVK ADGS+++ LSYHRA Y YDDY+DIYLQR
Sbjct: 1526 YVMWM----IIDNGTRELGMAGVATSDYANGPFDFIRSLYPDGNQTRDQTLF--QDDDGTAYLLKTYYDTTDYVVPEAVMQPTWESVKNADGSINFALSYHRAEYDPGYDDYYDIYLQR 1638
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: A0A7S2LHA4_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHA4_9STRA) HSP 1 Score: 142 bits (359), Expect = 4.230e-37 Identity = 72/123 (58.54%), Postives = 83/123 (67.48%), Query Frame = 1
Query: 1 YVMWMGAGEYDGNGTFGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIGEGSDGRG------YLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
YVMWM + G++GVA S + +GPF+F R+ YPDGNETHDQT+FI DG G YL RTYYA EYVLP AVMQP W SVK DGS +GL+YHRA Y YD+YHDIYLQR
Sbjct: 1509 YVMWMTVDNDERE--LGMAGVAISDFANGPFDFVRSFYPDGNETHDQTIFIDGDVDGEGRLNSTAYLVRTYYATIEYVLPAAVMQPMWESVKNIDGSTHFGLTYHRANYEPGYDNYHDIYLQR 1629
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: A0A7S4T1F0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T1F0_9STRA) HSP 1 Score: 134 bits (338), Expect = 1.280e-35 Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 49 GLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIGEGSD-GRGYLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
G++ VA S YPDGP+ F R+LYPDGN+T DQT+ + SD G YL RTYYA EYVLP VMQP W SVK DG+ ++ LS+HRA Y YDDYHDIYLQR
Sbjct: 20 GMAAVAVSNYPDGPYQFVRSLYPDGNQTRDQTIMQDKDSDDGAAYLIRTYYATIEYVLPSPVMQPIWESVKNVDGTTNFALSHHRAVYEPGYDDYHDIYLQR 121
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: A0A7S2GBC0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GBC0_9STRA) HSP 1 Score: 137 bits (345), Expect = 3.160e-35 Identity = 67/123 (54.47%), Postives = 84/123 (68.29%), Query Frame = 1
Query: 1 YVMWMGAGEYDGNGTFGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIGEGSDGRGYLARTYYAETEYVLPKAVMQPTWSSVKKA------DGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
YVMW+ + T GL+GVA S Y +GPF+F R+ +PDGN T DQT++ DGR +L RTYY + EY+LP+AVMQP WS+VK DG D+ LSYHR FYS +YD+YHDIYLQR
Sbjct: 599 YVMWLNIDNEER--TLGLAGVAISDYANGPFDFLRSFFPDGNRTRDQTIW--RSPDGRAFLGRTYYTDVEYILPEAVMQPLWSAVKTPTDDPLKDGETDFSLSYHRTFYSSDYDNYHDIYLQR 717
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: A0A7S0SXR7_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXR7_9STRA) HSP 1 Score: 128 bits (322), Expect = 4.130e-32 Identity = 65/117 (55.56%), Postives = 75/117 (64.10%), Query Frame = 1
Query: 1 YVMWMGAGEYDGNGTFGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIGEGSDGRGYLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
YVMW A N T +S TS Y DGPF FRR+ YPDGN T DQ +F +D + L RTYY EYVLPKA+MQP W SVK DG +Y SYHRA+Y YD+Y+DIYLQR
Sbjct: 1712 YVMW--AAMDHSNRTLAMSAAMTSPYEDGPFYFRRSFYPDGNRTRDQVIFFN--NDVQAVLGRTYYQTVEYVLPKAIMQPVWESVKDRDGVTNYRASYHRAWYDIGYDNYNDIYLQR 1824
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: F0YFP0_AURAN (MFS domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFP0_AURAN) HSP 1 Score: 126 bits (316), Expect = 2.690e-31 Identity = 67/127 (52.76%), Postives = 82/127 (64.57%), Query Frame = 1
Query: 1 YVMWMGAGEYDGNGTFGLS--GVATSRYPDGPFNFRRTLYPDGNETHDQTVF-IGEGSD-------GRGYLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
+VMWMG N T GL+ GVA++ + GPF FRR+LYPDGNET DQ V+ IG G+ L RTY+A+ E++LP MQP W VK +G D+GLSYHR Y +EYDDYHDIYLQR
Sbjct: 2375 FVMWMGVD----NATRGLALAGVASAAHAGGPFAFRRSLYPDGNETRDQAVWAIGGGAPDLASNPYSTALLGRTYFADVEHLLPSPQMQPIWEMVKDPEGRTDFGLSYHRGIYQREYDDYHDIYLQR 2497 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18849.4703.1 >prot_H-paniculata_contig18849.4703.1 ID=prot_H-paniculata_contig18849.4703.1|Name=mRNA_H-paniculata_contig18849.4703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp MWMGAGEYDGNGTFGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIGback to top mRNA from alignment at H-paniculata_contig18849:1417..2253+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18849.4703.1 ID=mRNA_H-paniculata_contig18849.4703.1|Name=mRNA_H-paniculata_contig18849.4703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=837bp|location=Sequence derived from alignment at H-paniculata_contig18849:1417..2253+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18849:1417..2253+ >mRNA_H-paniculata_contig18849.4703.1 ID=mRNA_H-paniculata_contig18849.4703.1|Name=mRNA_H-paniculata_contig18849.4703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig18849:1417..2253+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |