mRNA_H-paniculata_contig18849.4703.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18849.4703.1
Unique NamemRNA_H-paniculata_contig18849.4703.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: D8LIJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ2_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 8.980e-57
Identity = 96/117 (82.05%), Postives = 103/117 (88.03%), Query Frame = 1
Query:    1 YVMWMGAGEYDGNGTFGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIGEGSDGRGYLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
            +VMWMGAGE   NGTFGLS VATS YPDGPFN RRTLYPDGNETHDQTVFIG  +DGRGYLARTYYAE EYVLP AVMQP WSSV+  DGS+D+GLSYHRAFYS +YDDYHDIY+QR
Sbjct: 1703 FVMWMGAGE--SNGTFGLSAVATSGYPDGPFNLRRTLYPDGNETHDQTVFIG--ADGRGYLARTYYAEIEYVLPGAVMQPVWSSVEHPDGSVDFGLSYHRAFYSPDYDDYHDIYIQR 1815          
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: A0A6H5JBJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ3_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 3.000e-51
Identity = 96/159 (60.38%), Postives = 103/159 (64.78%), Query Frame = 1
Query:    1 YVMWMGAGEYDGNGTFGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIG------------------------------------------EGSDGRGYLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
            +VMWMGAGE   NGTFGLS VATS YPDGPF  RRTLYPDGNETHDQTVFIG                                           G+DGRGYLARTYYAE EYVLP AVMQP WSSV+  DGS+D+GLSYHRAFYS +YDDYHDIY+QR
Sbjct: 1727 FVMWMGAGE--SNGTFGLSAVATSGYPDGPFTLRRTLYPDGNETHDQTVFIGGLRYSHHAMLAGCFTLPSTVRSPFQKKGSKHHTRLSYVPPPKAGADGRGYLARTYYAEIEYVLPGAVMQPVWSSVEHPDGSVDFGLSYHRAFYSPDYDDYHDIYIQR 1883          
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: A0A835YHE6_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHE6_9STRA)

HSP 1 Score: 151 bits (381), Expect = 4.610e-40
Identity = 75/117 (64.10%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 YVMWMGAGEYDGNGTFGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIGEGSDGRGYLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
            YVMW G  E +GN T GL+GVA + +P GPF F+R+ YPDGN T DQTV+  + +DG G LARTYY  TEYV+P  VMQP W SVK  DGS D+GLSYHRAFY+  YDDYHDI+LQR
Sbjct: 1669 YVMW-GTVE-NGNRTMGLAGVAVADHPGGPFRFQRSFYPDGNATFDQTVY--QDADGHGVLARTYYDTTEYVMPGPVMQPIWESVKAPDGSTDFGLSYHRAFYNSSYDDYHDIFLQR 1781          
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: A0A7S4DA20_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DA20_HETAK)

HSP 1 Score: 142 bits (359), Expect = 4.430e-38
Identity = 68/117 (58.12%), Postives = 85/117 (72.65%), Query Frame = 1
Query:    1 YVMWMGAGEYDGNGTFGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIGEGSDGRGYLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
            +VMWMG      N T G++ VA + +P GPF+F R+ YPDGN+T+DQTV    G  GR YLARTYY + EYVLP+ +M P W SVK  +GS+ +GL+YHRAFY  EYD+YHDIYLQR
Sbjct:  115 WVMWMGLDN--ANRTLGMAAVAVADHPGGPFHFVRSFYPDGNQTYDQTVMAAPG--GRAYLARTYYQDVEYVLPEPLMMPIWESVKDENGSVLFGLNYHRAFYEPEYDNYHDIYLQR 227          
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: B5YLR0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YLR0_THAPS)

HSP 1 Score: 145 bits (365), Expect = 6.560e-38
Identity = 73/119 (61.34%), Postives = 89/119 (74.79%), Query Frame = 1
Query:    1 YVMWMGAGEYDGNGT--FGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIGEGSDGRGYLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
            YVMWM       NGT   G++GVATS Y +GPF+F R+LYPDGN+T DQT+F  +  DG  YL +TYY  T+YV+P+AVMQPTW SVK ADGS+++ LSYHRA Y   YDDY+DIYLQR
Sbjct: 1526 YVMWM----IIDNGTRELGMAGVATSDYANGPFDFIRSLYPDGNQTRDQTLF--QDDDGTAYLLKTYYDTTDYVVPEAVMQPTWESVKNADGSINFALSYHRAEYDPGYDDYYDIYLQR 1638          
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: A0A7S2LHA4_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHA4_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.230e-37
Identity = 72/123 (58.54%), Postives = 83/123 (67.48%), Query Frame = 1
Query:    1 YVMWMGAGEYDGNGTFGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIGEGSDGRG------YLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
            YVMWM     +     G++GVA S + +GPF+F R+ YPDGNETHDQT+FI    DG G      YL RTYYA  EYVLP AVMQP W SVK  DGS  +GL+YHRA Y   YD+YHDIYLQR
Sbjct: 1509 YVMWMTVDNDERE--LGMAGVAISDFANGPFDFVRSFYPDGNETHDQTIFIDGDVDGEGRLNSTAYLVRTYYATIEYVLPAAVMQPMWESVKNIDGSTHFGLTYHRANYEPGYDNYHDIYLQR 1629          
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: A0A7S4T1F0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T1F0_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.280e-35
Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 1
Query:   49 GLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIGEGSD-GRGYLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
            G++ VA S YPDGP+ F R+LYPDGN+T DQT+   + SD G  YL RTYYA  EYVLP  VMQP W SVK  DG+ ++ LS+HRA Y   YDDYHDIYLQR
Sbjct:   20 GMAAVAVSNYPDGPYQFVRSLYPDGNQTRDQTIMQDKDSDDGAAYLIRTYYATIEYVLPSPVMQPIWESVKNVDGTTNFALSHHRAVYEPGYDDYHDIYLQR 121          
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: A0A7S2GBC0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GBC0_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.160e-35
Identity = 67/123 (54.47%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 YVMWMGAGEYDGNGTFGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIGEGSDGRGYLARTYYAETEYVLPKAVMQPTWSSVKKA------DGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
            YVMW+     +   T GL+GVA S Y +GPF+F R+ +PDGN T DQT++     DGR +L RTYY + EY+LP+AVMQP WS+VK        DG  D+ LSYHR FYS +YD+YHDIYLQR
Sbjct:  599 YVMWLNIDNEER--TLGLAGVAISDYANGPFDFLRSFFPDGNRTRDQTIW--RSPDGRAFLGRTYYTDVEYILPEAVMQPLWSAVKTPTDDPLKDGETDFSLSYHRTFYSSDYDNYHDIYLQR 717          
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: A0A7S0SXR7_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXR7_9STRA)

HSP 1 Score: 128 bits (322), Expect = 4.130e-32
Identity = 65/117 (55.56%), Postives = 75/117 (64.10%), Query Frame = 1
Query:    1 YVMWMGAGEYDGNGTFGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIGEGSDGRGYLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
            YVMW  A     N T  +S   TS Y DGPF FRR+ YPDGN T DQ +F    +D +  L RTYY   EYVLPKA+MQP W SVK  DG  +Y  SYHRA+Y   YD+Y+DIYLQR
Sbjct: 1712 YVMW--AAMDHSNRTLAMSAAMTSPYEDGPFYFRRSFYPDGNRTRDQVIFFN--NDVQAVLGRTYYQTVEYVLPKAIMQPVWESVKDRDGVTNYRASYHRAWYDIGYDNYNDIYLQR 1824          
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Match: F0YFP0_AURAN (MFS domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFP0_AURAN)

HSP 1 Score: 126 bits (316), Expect = 2.690e-31
Identity = 67/127 (52.76%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    1 YVMWMGAGEYDGNGTFGLS--GVATSRYPDGPFNFRRTLYPDGNETHDQTVF-IGEGSD-------GRGYLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAFYSKEYDDYHDIYLQR 351
            +VMWMG      N T GL+  GVA++ +  GPF FRR+LYPDGNET DQ V+ IG G+            L RTY+A+ E++LP   MQP W  VK  +G  D+GLSYHR  Y +EYDDYHDIYLQR
Sbjct: 2375 FVMWMGVD----NATRGLALAGVASAAHAGGPFAFRRSLYPDGNETRDQAVWAIGGGAPDLASNPYSTALLGRTYFADVEHLLPSPQMQPIWEMVKDPEGRTDFGLSYHRGIYQREYDDYHDIYLQR 2497          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18849.4703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIJ2_ECTSI8.980e-5782.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBJ3_9PHAE3.000e-5160.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YHE6_9STRA4.610e-4064.102Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S4DA20_HETAK4.430e-3858.12Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B5YLR0_THAPS6.560e-3861.34Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S2LHA4_9STRA4.230e-3758.54Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S4T1F0_9STRA1.280e-3561.76Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2GBC0_9STRA3.160e-3554.47Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0SXR7_9STRA4.130e-3255.56Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
F0YFP0_AURAN2.690e-3152.76MFS domain-containing protein n=1 Tax=Aureococcus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18849contigH-paniculata_contig18849:1417..2253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.6
Seed ortholog evalue3.2e-48
Seed eggNOG ortholog2880.D8LIJ2
Hectar predicted targeting categoryother localisation
EggNOG OGs28K2B@1,2QSGV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size351
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18849.4703.1prot_H-paniculata_contig18849.4703.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18849 1423..2253 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929450.284178-UTR-H-paniculata_contig18849:1416..14221622929450.284178-UTR-H-paniculata_contig18849:1416..1422Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18849 1417..1422 +
1691480866.612701-UTR-H-paniculata_contig18849:1416..14221691480866.612701-UTR-H-paniculata_contig18849:1416..1422Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18849 1417..1422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929450.3022296-CDS-H-paniculata_contig18849:1422..15761622929450.3022296-CDS-H-paniculata_contig18849:1422..1576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18849 1423..1576 +
1691480866.6256535-CDS-H-paniculata_contig18849:1422..15761691480866.6256535-CDS-H-paniculata_contig18849:1422..1576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18849 1423..1576 +
1622929450.317611-CDS-H-paniculata_contig18849:2062..22531622929450.317611-CDS-H-paniculata_contig18849:2062..2253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18849 2063..2253 +
1691480866.637218-CDS-H-paniculata_contig18849:2062..22531691480866.637218-CDS-H-paniculata_contig18849:2062..2253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18849 2063..2253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18849.4703.1

>prot_H-paniculata_contig18849.4703.1 ID=prot_H-paniculata_contig18849.4703.1|Name=mRNA_H-paniculata_contig18849.4703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MWMGAGEYDGNGTFGLSGVATSRYPDGPFNFRRTLYPDGNETHDQTVFIG
EGSDGRGYLARTYYAETEYVLPKAVMQPTWSSVKKADGSMDYGLSYHRAF
YSKEYDDYHDIYLQR
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mRNA from alignment at H-paniculata_contig18849:1417..2253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18849.4703.1 ID=mRNA_H-paniculata_contig18849.4703.1|Name=mRNA_H-paniculata_contig18849.4703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=837bp|location=Sequence derived from alignment at H-paniculata_contig18849:1417..2253+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGTGATGTGGATGGGAGCCGGAGAGTATGACGGCAACGGAACGTTCGG TCTTTCCGGTGTAGCGACCAGTCGCTATCCCGACGGACCATTCAACTTCC GAAGGACGCTCTATCCGGACGGAAACGAGACCCACGACCAGACAGTGTTC ATTGGTGAGGGTGCCGTTAACATTGTCATGGATTTTTGACCGTCATTAAT CACAATAGTTGATAGCTCAGTGCCGCTTTTGACGACAACCATTTGGGTGA TTAGGCGGCTTCGAAGTTCTGATATTGTCAAGGGTTGAGAGTGCACACAA AATTGGGTTCTTCTGTGGTCAGGAGAATCGGCCAAACGCGTCTTCGCTTT TCAAGCGTTCCGAACCGGTCATCAGAGAACGCATGAAGCCACAGTCTGTC TACCTGCAACAAGGTTCTTCAGCCACAGCGGAAGGCAACGCACCTTGAAA CGACGGAAATAGCGCTCCTGTCCCCGTATCCCATGCCATCGGGTTCTTGG CGCGACGGATCTCTGGGTTGTCACTTTACAGATTCAGGTCTTCTATTAAT ACTTTCTGGCCTCATTTGTGCTGAGTTTAGTGTTGGATATTTCATCCAAG TGTCCACTCCAAAATTGTCTGTGTAAGCTATATTGGTAACATGCAGGATC TGACGGGCGGGGATACTTGGCCCGCACATACTACGCGGAGACGGAGTACG TGCTGCCGAAGGCAGTGATGCAGCCGACGTGGAGTTCGGTGAAGAAAGCG GACGGGTCGATGGACTACGGTCTGAGCTATCACCGGGCCTTCTACTCTAA GGAGTATGACGACTACCATGACATCTACTTGCAGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig18849:1417..2253+

>mRNA_H-paniculata_contig18849.4703.1 ID=mRNA_H-paniculata_contig18849.4703.1|Name=mRNA_H-paniculata_contig18849.4703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig18849:1417..2253+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGATGGGAGCCGGAGAGTATGACGGCAACGGAACGTTCGGTCTTTC
CGGTGTAGCGACCAGTCGCTATCCCGACGGACCATTCAACTTCCGAAGGA
CGCTCTATCCGGACGGAAACGAGACCCACGACCAGACAGTGTTCATTGGT
GAGGATGTGGATGGGAGCCGGAGAGTATGACGGCAACGGAACGTTCGGTC
TTTCCGGTGTAGCGACCAGTCGCTATCCCGACGGACCATTCAACTTCCGA
AGGACGCTCTATCCGGACGGAAACGAGACCCACGACCAGACAGTGTTCAT
TGGTGAGGGATCTGACGGGCGGGGATACTTGGCCCGCACATACTACGCGG
AGACGGAGTACGTGCTGCCGAAGGCAGTGATGCAGCCGACGTGGAGTTCG
GTGAAGAAAGCGGACGGGTCGATGGACTACGGTCTGAGCTATCACCGGGC
CTTCTACTCTAAGGAGTATGACGACTACCATGACATCTACTTGCAGAGGG
ATCTGACGGGCGGGGATACTTGGCCCGCACATACTACGCGGAGACGGAGT
ACGTGCTGCCGAAGGCAGTGATGCAGCCGACGTGGAGTTCGGTGAAGAAA
GCGGACGGGTCGATGGACTACGGTCTGAGCTATCACCGGGCCTTCTACTC
TAAGGAGTATGACGACTACCATGACATCTACTTGCAGAGG
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