mRNA_H-paniculata_contig1884.4698.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1884.4698.1
Unique NamemRNA_H-paniculata_contig1884.4698.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 4.390e-63
Identity = 115/260 (44.23%), Postives = 160/260 (61.54%), Query Frame = 1
Query:  409 LRVIEPTLGSTVVAERPYSVVWAGAESTARFDIDLYYCDSFSYSFD-ATCAEFVEHLCLE-DQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDAILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEV--GPGVGDCGTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEIVPILL*ENEDLWQWMHERLNIS 1176
            L+V+ P +  TVV+ RPY V W GA +  RF+IDL+YC S+SY F+ A C  ++ ++C E D  GC+ +      +V  PEPL G S  GYR+RI++V  G + +  SD+FYL S  DA  +     G P+I VV+P  D++AIAG+  TVEFDYDN +G+    FKIDLY+     G GDCGTWVTS+CD P  GC D+ G Y+ VIP   + GMY +RVG   D++++ CSP+FE+V            W+    ++S
Sbjct:   26 LQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSS-QVTFPEPLGGRSNEGYRIRIAEV--GSDTYRCSDDFYLMSSADAPAVGED--GGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAADAAGAAGLWVDSATSLS 280          
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 1.520e-60
Identity = 115/253 (45.45%), Postives = 152/253 (60.08%), Query Frame = 1
Query:  370 AMVGMITNVAK--AELRVIEPTLGSTVVAERPYSVVWAGAESTARFDIDLYYCDSFSYSFDAT--CAEFVEHLCLEDQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDAILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGDCGTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEIVP 1116
            A+ GM+ N+      LRV+ P +  TVV++ PY V W GA    RF+IDL+YC S+S+ F+    C  +V +LC E    C+ ++     +V +PEP+ G S  GYRVRI +V  G   F  SD FYL S  DA   +      P++ VV+P   ++A+AG   TVEFDYDN +G  +  FKIDLY    G GDCG WV+S+CD P  GC DT G YD VIP   +GGMY +RVG   D+SV  CS +FE+VP
Sbjct:   10 ALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMS-QVTLPEPVDGHSNSGYRVRIGKV--GTETFRCSDEFYLMSSADASDQDG-----PTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHA-EGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVP 253          
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 3.590e-60
Identity = 110/251 (43.82%), Postives = 160/251 (63.75%), Query Frame = 1
Query:  409 LRVIEPTLGSTVVAERPYSVVWAGAESTARFDIDLYYCDSFSYSFDAT--CAEFVEHLCLEDQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDAILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGDCGTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEIV---PILL*ENEDLW 1146
            LRV+ P +  +V + RPY V W GA++  RF++DL+YC S+S+ F     C  ++ ++C E    C+ ++     +V  PEP+AG S +GYRVRIS+V  G + F  S++FYL +  D  ++E    G P++ VV+P  +++A+AG+  TVEFDYDN +G+    FKIDLY+   G GDCG+WVTS+CD P  GC+D+ G YD VIP   + GMY +RVG   D+S++ CSP+FEI    P +L     LW
Sbjct:   25 LRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSS-QVTFPEPVAGHSNNGYRVRISEV--GTDNFRCSEDFYLVASAD--VLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKA-EGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGVLAAGGGLW 269          
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 7.010e-51
Identity = 105/235 (44.68%), Postives = 140/235 (59.57%), Query Frame = 1
Query:  409 LRVIEPTLGSTVVAERPYSVVWAGAESTARFDIDLYYCDSFSYSFDATCAEFVEHLCLEDQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDAILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGDCGTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEIV 1113
            L V+ P  G  VVA+  Y+V W GA S  R+DIDLYYC S     +  C ++V  LC     GC   +  G ++V MPEP+ G S  GY+V ++      + +  S +F L + T+A   ++  +G   ++V SP     A+AG E TVEFDYDN  G S   F IDLY  G G GDCGT+VT+ICD P+ GCKD+ G YD VIP   + GMY++RVG   D+ V+GCS +FEIV
Sbjct:   20 LEVVSPAAGDMVVADSAYTVEWTGATS-GRYDIDLYYCGSVC--MEDECGDWVTALCPYGDDGCPDTQ--GDYDVVMPEPMDGTSS-GYKVMVTD-SSDESDYGCSGDFTLIASTEAP--DATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSG-GSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243          
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 1.100e-50
Identity = 105/237 (44.30%), Postives = 140/237 (59.07%), Query Frame = 1
Query:  409 LRVIEPTLGSTVVAERPYSVVWAGAESTARFDIDLYYCDSFSYSFDATCAEFVEHLCLEDQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDA--ILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGDCGTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEIV 1113
            L V+ P+    VVA+R Y+V W GA+S  RF+IDLY+C S     + +C ++V  LC   + GC   E  G +++ MPEP++G S  GY+VR+  V    ++   SD FYL +  DA     ES Y     + V SP +   A AG+E TVEFDYDN  G     F IDLY +  G GDCGT+VTSICD P+ GCKD+ G YD  IP   + G Y +RVG+  D  ++GCS TF I+
Sbjct:   20 LEVVTPSADLIVVADRTYTVEWTGADS-GRFEIDLYHCGSMC--MEDSCGDWVTALCPYGEEGCPDNE--GDYDIVMPEPMSGESNSGYKVRVMDVSD-EDSMDCSDAFYLMASEDAPDAGSESGYF----LTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLY-MADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIM 245          
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 2.100e-48
Identity = 99/234 (42.31%), Postives = 140/234 (59.83%), Query Frame = 1
Query:  409 LRVIEPTLGSTVVAERPYSVVWAGAESTARFDIDLYYCDSFSYSFDATCAEFVEHLCLEDQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDAILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGDCGTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEI 1110
            L V+ P  G +V+A+R Y+V W G  +T RF+IDLYYC+SF    D  C ++V  LC     GC   +  G +++ MPEP++G S  GY+V +   +   +    SD+F L +  DA   E+  +G  S+ V SP     A+AG+  TVE+DY+N +G S   F +DLY VG G GDCGT+VT++CD P+ GC D+ G YD  IP     GMY++RVG   D  ++ CS TFE+
Sbjct:   20 LEVVSPDGGISVLADRAYTVEWTGT-TTGRFEIDLYYCNSFC--MDDVCGDWVTALCPYGADGC--PDSAGDYDIIMPEPMSGTSS-GYKVMVKNAEDESD-MGCSDDFTLIASEDAP--EAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVG-GTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242          
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 8.390e-35
Identity = 88/235 (37.45%), Postives = 114/235 (48.51%), Query Frame = 1
Query:  409 LRVIEPTLGSTVVAERPYSVVWAGAESTARFDIDLYYCDSFSYSFDATCAEFVEHLCLEDQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDAILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGDCGTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEIV 1113
            L V  P  G  +VA    +V W G  S+ RFDIDLYYC S     +  C ++V  LC     GC   +  G ++V MPEP+ G S  GY+V ++      +    S  F   +L  +                                 FD+DN +G S   F IDLY  G G GDCGT+VTSICD  + GCKD+ G YD VIP   + GMY++RVG   D  V GCS +FEI+
Sbjct:   20 LEVTSPAAGDMIVAASSTTVEWTGT-SSGRFDIDLYYCGSVC--MEDECGDWVTALCPYGDDGCPDTQ--GDYDVVMPEPMDGTSS-GYKVMVTD-SSDESDMGCSGEF---TLVASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSG-GSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEII 243          
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: A0A6H5KR87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR87_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 5.650e-34
Identity = 77/188 (40.96%), Postives = 105/188 (55.85%), Query Frame = 1
Query:  553 CAEFVEHLCLEDQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDAILI-ESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGDCGTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEIV 1113
            C ++V  LC     GC   +  G +++ MPEP+ G S  GY++ ++  +   ++   S +F L + TDA    E  Y    S+ V SP    +A+AG+  TVE+DY+N  G SK  F IDLY  G G GDCGT+V ++CD P  GC D+ G YD  IP     GMY+VRVG   D  +  CS  FEIV
Sbjct:    5 CGDWVTALCPYGADGCPDTQ--GDYDIVMPEPMDGTSS-GYKIMVTDSND-ESSMGCSGDFTLVASTDAPAAGEVGY----SLTVNSPSDGDIAMAGEVYTVEWDYNNGLGSSKDRFAIDLYTYGTGTGDCGTYVATLCDKPTIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDEIMFDCSEAFEIV 184          
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: D7G9C0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C0_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 5.440e-25
Identity = 77/251 (30.68%), Postives = 119/251 (47.41%), Query Frame = 1
Query:  370 AMVGM--ITNVAKAELRVIEPTLGSTVVAERPYSVVWAGAESTARFDIDLYYCDSFSYSFDATCAEFVEHLCLEDQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDAILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGDC-GTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEIV 1113
            A+VG+  + +VA  E +VI P+ G TV++ R Y+V W      +  +IDL YC S     +  C +++  LC   + GC   E  G ++V MPEP+AG SG  Y+                                       +  +SP    +A  G+E TV+FDY +        F I+LYE   G+G C G +V+++CD P  GCKD+ G YD ++ + V  G   + + +  D + +GCS  F +V
Sbjct:   12 ALVGLLDVASVAGEEFQVIAPSEGMTVISSRTYTVEWTNNVPNSFVEIDLCYCGSSCK--EGECGQWITSLCPYGEDGCHDIE--GDYDVVMPEPMAGTSGGAYK--------------------------------------GLTFISPETGDLAYVGQEYTVQFDYFSEVDSRVGRFNIELYEDN-GLGGCNGEFVSTLCDKPDIGCKDSQGDYDIIMAD-VPTGECKIHISRFEDTATYGCSGIFFVV 218          
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: D8LPI2_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI2_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 6.070e-10
Identity = 41/123 (33.33%), Postives = 65/123 (52.85%), Query Frame = 1
Query:  760 ILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGD---CGTWVTSICDSPATGCKDTHGHYDAVIPEWV-DGGMYAVRVGKL-MDNSVHGCSPTFEIV 1113
            +L    + G  S+ V +P +D V ++G+  TV ++ D+    +   F IDLY+      D   CGTW T++C    +GC D+ G YD V+PE   D    A R+G L +++   GCS  F ++
Sbjct:   20 LLTTGLHSGRASLTVTTPEEDLVVVSGRTFTVRWNQDDDGSTTPGRFAIDLYQYQSYSMDEDSCGTWATALCPYGESGCLDSTGDYDVVLPEPAPDLSDSAYRIGVLGVEDGSFGCSDKFFLI 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LEQ9_ECTSI4.390e-6344.23EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE... [more]
D7FN59_ECTSI1.520e-6045.45EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KPZ5_9PHAE3.590e-6043.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G3E8_ECTSI7.010e-5144.68Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D7FYL2_ECTSI1.100e-5044.30EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
A0A6H5JY62_9PHAE2.100e-4842.31GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
A0A6H5KP11_9PHAE8.390e-3537.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR87_9PHAE5.650e-3440.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9C0_ECTSI5.440e-2530.68EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LPI2_ECTSI6.070e-1033.33EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1884contigH-paniculata_contig1884:12482..16066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size1811
Cds size801
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929449.7792244-UTR-H-paniculata_contig1884:12481..131641622929449.7792244-UTR-H-paniculata_contig1884:12481..13164Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1884 12482..13164 -
1691480866.2954304-UTR-H-paniculata_contig1884:12481..131641691480866.2954304-UTR-H-paniculata_contig1884:12481..13164Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1884 12482..13164 -
1622929449.85835-UTR-H-paniculata_contig1884:15739..160661622929449.85835-UTR-H-paniculata_contig1884:15739..16066Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1884 15740..16066 -
1691480866.3616507-UTR-H-paniculata_contig1884:15739..160661691480866.3616507-UTR-H-paniculata_contig1884:15739..16066Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1884 15740..16066 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929449.7898133-CDS-H-paniculata_contig1884:13164..132951622929449.7898133-CDS-H-paniculata_contig1884:13164..13295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 13165..13295 -
1691480866.3075788-CDS-H-paniculata_contig1884:13164..132951691480866.3075788-CDS-H-paniculata_contig1884:13164..13295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 13165..13295 -
1622929449.802976-CDS-H-paniculata_contig1884:13565..137041622929449.802976-CDS-H-paniculata_contig1884:13565..13704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 13566..13704 -
1691480866.3208623-CDS-H-paniculata_contig1884:13565..137041691480866.3208623-CDS-H-paniculata_contig1884:13565..13704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 13566..13704 -
1622929449.8144689-CDS-H-paniculata_contig1884:13982..142941622929449.8144689-CDS-H-paniculata_contig1884:13982..14294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 13983..14294 -
1691480866.3301454-CDS-H-paniculata_contig1884:13982..142941691480866.3301454-CDS-H-paniculata_contig1884:13982..14294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 13983..14294 -
1622929449.827063-CDS-H-paniculata_contig1884:14676..147671622929449.827063-CDS-H-paniculata_contig1884:14676..14767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 14677..14767 -
1691480866.3446703-CDS-H-paniculata_contig1884:14676..147671691480866.3446703-CDS-H-paniculata_contig1884:14676..14767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 14677..14767 -
1622929449.8417435-CDS-H-paniculata_contig1884:15611..157391622929449.8417435-CDS-H-paniculata_contig1884:15611..15739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 15612..15739 -
1691480866.353047-CDS-H-paniculata_contig1884:15611..157391691480866.353047-CDS-H-paniculata_contig1884:15611..15739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 15612..15739 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1884.4698.1prot_H-paniculata_contig1884.4698.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1884 13165..15739 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1884.4698.1

>prot_H-paniculata_contig1884.4698.1 ID=prot_H-paniculata_contig1884.4698.1|Name=mRNA_H-paniculata_contig1884.4698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=267bp
MALSRLITAASAAMAMVGMITNVAKAELRVIEPTLGSTVVAERPYSVVWA
GAESTARFDIDLYYCDSFSYSFDATCAEFVEHLCLEDQIGCVQEEHGGGH
EVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDAILIESF
YLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGP
GVGDCGTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDN
SVHGCSPTFEIVPILL*
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mRNA from alignment at H-paniculata_contig1884:12482..16066-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1884.4698.1 ID=mRNA_H-paniculata_contig1884.4698.1|Name=mRNA_H-paniculata_contig1884.4698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3585bp|location=Sequence derived from alignment at H-paniculata_contig1884:12482..16066- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTTAGCGGGTCGCACGAAAATCTGTCGTCGGACCACCCTCTGTCAGG TCCCCAGCAAGCCGTTCGGTGATTGCCGTAACAATGTGTGCGCATCCCCG ACACACACATATCCAGATTCTTTCTTCGCATACCTGGTACAGGCCAATTC GTTGCCGAGGAAAAGGACTATCACTTCCTGTTGCAGGTGTAAGGGTCCAG TGCACTCAACCGTTCTCAGATCGAACCGATCTGATTGGAGATAGACTCGC CGTTCAGACGTTCACTGACTGTGTTCTTGTGCTGGTGGTGGAGTTCAACA GTCGCGCAGCATCAGCAACAGGGATTGATGGCTCTTTCCAGGCTCATAAC GGCGGCGAGTGCTGCTATGGCAATGGTGGGTATGATAACCAATGTTGCAA AGGCGGAATTACGTGTTATCGAGCCGACTCTTGGTTCGACTGTGGTCGCG GAGAGGTGAGGCACGCTGTAATATTCCAAAATATATTCGTTGTGCAGTTA CTGTTGTTGTGTGCGGAGCGTGAAGAATATGTTGAAGAGAATCCATGTCA CCAACCAAACAAGTCGCACAGTATTCAGTGGAGTGCATCAATATCCTAGG CGTGTGGAGAGCGGATGGCTCATGATCATATCACTCCCAAGTTTGGTGAA TGCTGTTACTTGTTTTCTCAGAGCGCATGACGGCGTAATTGGATGTCTAT TTTGTATTTGCGCCGCCCAGCCCCGAGATCATGTTTATCTTCAACTAATA TAGGGTCCGTGACATGGGCAGATGCTCTGCGGTACAACTGTGAACCTTGT TCCCTTTCGATGGTTGCATAAACTTCACTGGTTTGTAGAGCCGTCGCACA CCGACCCGTGGTAATACAGGACAAGTTTTGGGACTGAAACGAAAATACTA CTTCTACAAGTATCTACTGGTACTGACAAGATACTGATATTGCCTGAGAC GGCTGCCAGTATTACCAGTGTCTCGAGATTTCACGTATGTCATTGTAAAA CACCTGATACTTCAGTGGAAGCATTGAAACCCTATATTGGATATTGTGTG TGATGAGGCATAGCGCACAAGCGCAACGTCTAAGACACTGGAGGAAATAC GGAGATGGGCAAGGTAAGGAAGCCCACGGGTAATAATGCAATGTATTTTT TCAGGGTCTGTTGATGTGATGGCACTAACCTGACACTGGCTCGGTACCGA GCCATTGCTGAATAAAGATGAACCATTTCCCTTGACCGCCACACCTCACT AATTAACTTGTCGATGTTTTTTCCCCGTGGTCGCGTCGTAATGGTCTAGG CCCTACTCCGTCGTATGGGCGGGTGCTGAAAGCACCGCGCGATTCGACAT CGACTTGTACTACTGCGACTCGTTCTCTTACTCCTTCGATGTAAGTGGGC ACTTTTTTCGCCGCTCGAAGTAAATGTATTTATCGAACAGTTAATTTTCG TTTTACATCACGATGACAAGGGAAGGAACAGCGCTAGCAAGTTTGACGGG ACGCCTCGGGACGAGTGTGAGTATCTAAGACTTCAATTTTCGCTATATTC TCGACATGTGATGGAACGAGACCCTATTCTCATTATTTTTAGGGATATTC AAATAATTGCCAATCCCTAGTGATGTGCACAAATATCCGTTCTCCGTGAC CAACCTTCGATTCCTTCGTCTTGCGCGAAGCGCAGGCATTCACATCCAGG TCCCCGTCCAACCTCGGGTGCCATAAATGACCCTCTACAGATGATATCTT CCCGCTTATCGCATTGCCTCAGGCAACCTGCGCAGAGTTCGTCGAGCATC TGTGCCTCGAGGATCAAATCGGCTGCGTGCAGGAGGAGCACGGTGGAGGA CACGAAGTTTATATGCCGGAACCATTAGCTGGGCTTTCGGGACACGGTTA CCGCGTGCGAATTTCGCAGGTCGATGGTGGACCCAATGCTTTCGCGTTCT CGGACAACTTTTATCTATCTTCCTTGACTGATGCAATCCTTATCGAGTCT TTTTATCTAGGTACACCGAGCATCGCGGTCGTGTCTCCAATGAAGGACTC GGTGGCCATTGCGGGCAAGGAGCTCACCGTCGAGGTGGGTATTTGTTTTT ACCCAGCCTGCGCGAGTGTTTTTTATCGCGTAAAGCAGCCTCTTCGACAG CATACGCGAAAAAGTCAACCGGGGAAATATATTTACCTACGGTACAACTG CGTGCTGCACGATGTTGAAAATTCAGCATGAGCGCTTTATAAGCCCCTTG GAATTCACAGCTGCGTTCCAAATAATTTTTCCGCTTGCTGTGACTTATAC AGATAACATGCATTCAATCTGTCAATGTTTCTTTGCAAACCCTTCTTGTC ATGGAAATAAAGTTCGACTACGATAACTCATGGGGCGATAGCAAACAGCT CTTCAAAATCGATCTCTACGAGGTTGGTCCTGGCGTTGGAGACTGCGGGA CCTGGGTGACTTCGATCTGCGATTCACCCGCGACCGGCTGCAAGGATACC CGTGAGTAGCAAATTATGGTTGTAACGAAACAGTCTGAAACAAGTCTCCC GTATCAATCTACAGATGGTTGTTTTTCATTGAGAAAGTGTTGTAAACGAG TGGCGTCTCACGAAAGAACCAGAAACGGAGAGGTGCTGACCAGCAACGTC TAAGCCCCCAATCAACTCCCCCTTCCTCCTGCTCGACCATATTTCCTTCC GTCCATCATATATGTTTTTCGCTTGCCTCGGGCGCCTGTGTTGCTCCTAT GTTTTTTGTTGTTGGCTACAGATGGACACTACGACGCTGTTATTCCGGAA TGGGTGGACGGGGGCATGTACGCAGTTCGGGTGGGCAAACTTATGGATAA CAGCGTGCACGGCTGCTCGCCGACGTTCGAAATAGTGCCCATATTATTGT AGGAGAACGAGGATCTGTGGCAATGGATGCATGAAAGATTGAATATTTCA TGTGTCGCCTGTCAGATGTTGTGATTTGTATTCGTTGTAATTACCACTCA TGTGGGGACGGTTGTGCTGTTACCCCCGCTTTGTAATTGAGCCTGGTGGG ACCGCGTTGTTGCTTTCATTCCGACAGTATCACATGTATATAAGAGACCT TTGGGTTGTCCGCAGCTGTGTATAGTAAAAGTCACTCAGATGTATGTATT TCGGTAGCGTGTTTTTTCCCCGCATCGATTTGCCGGTTTTCGTTTTGAAT AAGACGGATCCTTGGTTAAGCGTGCATATGCCTAATTGTGTGGTTGATTG AAGTAGTGTGTGCAGGTATTGTTTCGATTCTTCATTTCGCAAGTAATGTC AGTTCAATGAATCGGGTGCTTTTCGTGGCGTGTTTTTCTTGTAACGGTTT TAGGATGATTGCTTGTTCGAATTGAGAATCGATCGTTCTCTGGAGGATAA AATAGTTTTTGGTTATCAGCAAAAGTATTATTGCTGAATCATGTTAAATG GTCCAAGGCTTCGCGAATGAGGATAACGTCAGATTTTATGCGCCATTTTT GTTTTTCCGTCGGGCTATTGCCTGCCGAGATATTAGCAAAATACGAAGGA CACCTATAGCCGGTCACGGTTTTCCTCGTTTTCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig1884:12482..16066-

>mRNA_H-paniculata_contig1884.4698.1 ID=mRNA_H-paniculata_contig1884.4698.1|Name=mRNA_H-paniculata_contig1884.4698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1602bp|location=Sequence derived from alignment at H-paniculata_contig1884:12482..16066- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCTTTCCAGGCTCATAACGGCGGCGAGTGCTGCTATGGCAATGGT
GGGTATGATAACCAATGTTGCAAAGGCGGAATTACGTGTTATCGAGCCGA
CTCTTGGTTCGACTGTGGTCGCGGAGAGATGGCTCTTTCCAGGCTCATAA
CGGCGGCGAGTGCTGCTATGGCAATGGTGGGTATGATAACCAATGTTGCA
AAGGCGGAATTACGTGTTATCGAGCCGACTCTTGGTTCGACTGTGGTCGC
GGAGAGGCCCTACTCCGTCGTATGGGCGGGTGCTGAAAGCACCGCGCGAT
TCGACATCGACTTGTACTACTGCGACTCGTTCTCTTACTCCTTCGATGCC
CTACTCCGTCGTATGGGCGGGTGCTGAAAGCACCGCGCGATTCGACATCG
ACTTGTACTACTGCGACTCGTTCTCTTACTCCTTCGATGCAACCTGCGCA
GAGTTCGTCGAGCATCTGTGCCTCGAGGATCAAATCGGCTGCGTGCAGGA
GGAGCACGGTGGAGGACACGAAGTTTATATGCCGGAACCATTAGCTGGGC
TTTCGGGACACGGTTACCGCGTGCGAATTTCGCAGGTCGATGGTGGACCC
AATGCTTTCGCGTTCTCGGACAACTTTTATCTATCTTCCTTGACTGATGC
AATCCTTATCGAGTCTTTTTATCTAGGTACACCGAGCATCGCGGTCGTGT
CTCCAATGAAGGACTCGGTGGCCATTGCGGGCAAGGAGCTCACCGTCGAG
GCAACCTGCGCAGAGTTCGTCGAGCATCTGTGCCTCGAGGATCAAATCGG
CTGCGTGCAGGAGGAGCACGGTGGAGGACACGAAGTTTATATGCCGGAAC
CATTAGCTGGGCTTTCGGGACACGGTTACCGCGTGCGAATTTCGCAGGTC
GATGGTGGACCCAATGCTTTCGCGTTCTCGGACAACTTTTATCTATCTTC
CTTGACTGATGCAATCCTTATCGAGTCTTTTTATCTAGGTACACCGAGCA
TCGCGGTCGTGTCTCCAATGAAGGACTCGGTGGCCATTGCGGGCAAGGAG
CTCACCGTCGAGTTCGACTACGATAACTCATGGGGCGATAGCAAACAGCT
CTTCAAAATCGATCTCTACGAGGTTGGTCCTGGCGTTGGAGACTGCGGGA
CCTGGGTGACTTCGATCTGCGATTCACCCGCGACCGGCTGCAAGGATACC
CTTCGACTACGATAACTCATGGGGCGATAGCAAACAGCTCTTCAAAATCG
ATCTCTACGAGGTTGGTCCTGGCGTTGGAGACTGCGGGACCTGGGTGACT
TCGATCTGCGATTCACCCGCGACCGGCTGCAAGGATACCCATGGACACTA
CGACGCTGTTATTCCGGAATGGGTGGACGGGGGCATGTACGCAGTTCGGG
TGGGCAAACTTATGGATAACAGCGTGCACGGCTGCTCGCCGACGTTCGAA
ATAGTGCCCATATTATTGTAGATGGACACTACGACGCTGTTATTCCGGAA
TGGGTGGACGGGGGCATGTACGCAGTTCGGGTGGGCAAACTTATGGATAA
CAGCGTGCACGGCTGCTCGCCGACGTTCGAAATAGTGCCCATATTATTGT
AG
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