mRNA_H-paniculata_contig1884.4698.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI) HSP 1 Score: 219 bits (557), Expect = 4.390e-63 Identity = 115/260 (44.23%), Postives = 160/260 (61.54%), Query Frame = 1
Query: 409 LRVIEPTLGSTVVAERPYSVVWAGAESTARFDIDLYYCDSFSYSFD-ATCAEFVEHLCLE-DQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDAILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEV--GPGVGDCGTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEIVPILL*ENEDLWQWMHERLNIS 1176
L+V+ P + TVV+ RPY V W GA + RF+IDL+YC S+SY F+ A C ++ ++C E D GC+ + +V PEPL G S GYR+RI++V G + + SD+FYL S DA + G P+I VV+P D++AIAG+ TVEFDYDN +G+ FKIDLY+ G GDCGTWVTS+CD P GC D+ G Y+ VIP + GMY +RVG D++++ CSP+FE+V W+ ++S
Sbjct: 26 LQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSS-QVTFPEPLGGRSNEGYRIRIAEV--GSDTYRCSDDFYLMSSADAPAVGED--GGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAADAAGAAGLWVDSATSLS 280
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI) HSP 1 Score: 211 bits (537), Expect = 1.520e-60 Identity = 115/253 (45.45%), Postives = 152/253 (60.08%), Query Frame = 1
Query: 370 AMVGMITNVAK--AELRVIEPTLGSTVVAERPYSVVWAGAESTARFDIDLYYCDSFSYSFDAT--CAEFVEHLCLEDQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDAILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGDCGTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEIVP 1116
A+ GM+ N+ LRV+ P + TVV++ PY V W GA RF+IDL+YC S+S+ F+ C +V +LC E C+ ++ +V +PEP+ G S GYRVRI +V G F SD FYL S DA + P++ VV+P ++A+AG TVEFDYDN +G + FKIDLY G GDCG WV+S+CD P GC DT G YD VIP +GGMY +RVG D+SV CS +FE+VP
Sbjct: 10 ALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMS-QVTLPEPVDGHSNSGYRVRIGKV--GTETFRCSDEFYLMSSADASDQDG-----PTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHA-EGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVP 253
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE) HSP 1 Score: 211 bits (536), Expect = 3.590e-60 Identity = 110/251 (43.82%), Postives = 160/251 (63.75%), Query Frame = 1
Query: 409 LRVIEPTLGSTVVAERPYSVVWAGAESTARFDIDLYYCDSFSYSFDAT--CAEFVEHLCLEDQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDAILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGDCGTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEIV---PILL*ENEDLW 1146
LRV+ P + +V + RPY V W GA++ RF++DL+YC S+S+ F C ++ ++C E C+ ++ +V PEP+AG S +GYRVRIS+V G + F S++FYL + D ++E G P++ VV+P +++A+AG+ TVEFDYDN +G+ FKIDLY+ G GDCG+WVTS+CD P GC+D+ G YD VIP + GMY +RVG D+S++ CSP+FEI P +L LW
Sbjct: 25 LRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSS-QVTFPEPVAGHSNNGYRVRISEV--GTDNFRCSEDFYLVASAD--VLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKA-EGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGVLAAGGGLW 269
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 185 bits (470), Expect = 7.010e-51 Identity = 105/235 (44.68%), Postives = 140/235 (59.57%), Query Frame = 1
Query: 409 LRVIEPTLGSTVVAERPYSVVWAGAESTARFDIDLYYCDSFSYSFDATCAEFVEHLCLEDQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDAILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGDCGTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEIV 1113
L V+ P G VVA+ Y+V W GA S R+DIDLYYC S + C ++V LC GC + G ++V MPEP+ G S GY+V ++ + + S +F L + T+A ++ +G ++V SP A+AG E TVEFDYDN G S F IDLY G G GDCGT+VT+ICD P+ GCKD+ G YD VIP + GMY++RVG D+ V+GCS +FEIV
Sbjct: 20 LEVVSPAAGDMVVADSAYTVEWTGATS-GRYDIDLYYCGSVC--MEDECGDWVTALCPYGDDGCPDTQ--GDYDVVMPEPMDGTSS-GYKVMVTD-SSDESDYGCSGDFTLIASTEAP--DATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSG-GSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 185 bits (469), Expect = 1.100e-50 Identity = 105/237 (44.30%), Postives = 140/237 (59.07%), Query Frame = 1
Query: 409 LRVIEPTLGSTVVAERPYSVVWAGAESTARFDIDLYYCDSFSYSFDATCAEFVEHLCLEDQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDA--ILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGDCGTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEIV 1113
L V+ P+ VVA+R Y+V W GA+S RF+IDLY+C S + +C ++V LC + GC E G +++ MPEP++G S GY+VR+ V ++ SD FYL + DA ES Y + V SP + A AG+E TVEFDYDN G F IDLY + G GDCGT+VTSICD P+ GCKD+ G YD IP + G Y +RVG+ D ++GCS TF I+
Sbjct: 20 LEVVTPSADLIVVADRTYTVEWTGADS-GRFEIDLYHCGSMC--MEDSCGDWVTALCPYGEEGCPDNE--GDYDIVMPEPMSGESNSGYKVRVMDVSD-EDSMDCSDAFYLMASEDAPDAGSESGYF----LTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLY-MADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIM 245
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 179 bits (453), Expect = 2.100e-48 Identity = 99/234 (42.31%), Postives = 140/234 (59.83%), Query Frame = 1
Query: 409 LRVIEPTLGSTVVAERPYSVVWAGAESTARFDIDLYYCDSFSYSFDATCAEFVEHLCLEDQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDAILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGDCGTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEI 1110
L V+ P G +V+A+R Y+V W G +T RF+IDLYYC+SF D C ++V LC GC + G +++ MPEP++G S GY+V + + + SD+F L + DA E+ +G S+ V SP A+AG+ TVE+DY+N +G S F +DLY VG G GDCGT+VT++CD P+ GC D+ G YD IP GMY++RVG D ++ CS TFE+
Sbjct: 20 LEVVSPDGGISVLADRAYTVEWTGT-TTGRFEIDLYYCNSFC--MDDVCGDWVTALCPYGADGC--PDSAGDYDIIMPEPMSGTSS-GYKVMVKNAEDESD-MGCSDDFTLIASEDAP--EAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVG-GTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 142 bits (357), Expect = 8.390e-35 Identity = 88/235 (37.45%), Postives = 114/235 (48.51%), Query Frame = 1
Query: 409 LRVIEPTLGSTVVAERPYSVVWAGAESTARFDIDLYYCDSFSYSFDATCAEFVEHLCLEDQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDAILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGDCGTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEIV 1113
L V P G +VA +V W G S+ RFDIDLYYC S + C ++V LC GC + G ++V MPEP+ G S GY+V ++ + S F +L + FD+DN +G S F IDLY G G GDCGT+VTSICD + GCKD+ G YD VIP + GMY++RVG D V GCS +FEI+
Sbjct: 20 LEVTSPAAGDMIVAASSTTVEWTGT-SSGRFDIDLYYCGSVC--MEDECGDWVTALCPYGDDGCPDTQ--GDYDVVMPEPMDGTSS-GYKVMVTD-SSDESDMGCSGEF---TLVASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSG-GSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEII 243
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: A0A6H5KR87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR87_9PHAE) HSP 1 Score: 137 bits (346), Expect = 5.650e-34 Identity = 77/188 (40.96%), Postives = 105/188 (55.85%), Query Frame = 1
Query: 553 CAEFVEHLCLEDQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDAILI-ESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGDCGTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEIV 1113
C ++V LC GC + G +++ MPEP+ G S GY++ ++ + ++ S +F L + TDA E Y S+ V SP +A+AG+ TVE+DY+N G SK F IDLY G G GDCGT+V ++CD P GC D+ G YD IP GMY+VRVG D + CS FEIV
Sbjct: 5 CGDWVTALCPYGADGCPDTQ--GDYDIVMPEPMDGTSS-GYKIMVTDSND-ESSMGCSGDFTLVASTDAPAAGEVGY----SLTVNSPSDGDIAMAGEVYTVEWDYNNGLGSSKDRFAIDLYTYGTGTGDCGTYVATLCDKPTIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDEIMFDCSEAFEIV 184
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: D7G9C0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C0_ECTSI) HSP 1 Score: 115 bits (289), Expect = 5.440e-25 Identity = 77/251 (30.68%), Postives = 119/251 (47.41%), Query Frame = 1
Query: 370 AMVGM--ITNVAKAELRVIEPTLGSTVVAERPYSVVWAGAESTARFDIDLYYCDSFSYSFDATCAEFVEHLCLEDQIGCVQEEHGGGHEVYMPEPLAGLSGHGYRVRISQVDGGPNAFAFSDNFYLSSLTDAILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGDC-GTWVTSICDSPATGCKDTHGHYDAVIPEWVDGGMYAVRVGKLMDNSVHGCSPTFEIV 1113
A+VG+ + +VA E +VI P+ G TV++ R Y+V W + +IDL YC S + C +++ LC + GC E G ++V MPEP+AG SG Y+ + +SP +A G+E TV+FDY + F I+LYE G+G C G +V+++CD P GCKD+ G YD ++ + V G + + + D + +GCS F +V
Sbjct: 12 ALVGLLDVASVAGEEFQVIAPSEGMTVISSRTYTVEWTNNVPNSFVEIDLCYCGSSCK--EGECGQWITSLCPYGEDGCHDIE--GDYDVVMPEPMAGTSGGAYK--------------------------------------GLTFISPETGDLAYVGQEYTVQFDYFSEVDSRVGRFNIELYEDN-GLGGCNGEFVSTLCDKPDIGCKDSQGDYDIIMAD-VPTGECKIHISRFEDTATYGCSGIFFVV 218
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Match: D8LPI2_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI2_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 6.070e-10 Identity = 41/123 (33.33%), Postives = 65/123 (52.85%), Query Frame = 1
Query: 760 ILIESFYLGTPSIAVVSPMKDSVAIAGKELTVEFDYDNSWGDSKQLFKIDLYEVGPGVGD---CGTWVTSICDSPATGCKDTHGHYDAVIPEWV-DGGMYAVRVGKL-MDNSVHGCSPTFEIV 1113
+L + G S+ V +P +D V ++G+ TV ++ D+ + F IDLY+ D CGTW T++C +GC D+ G YD V+PE D A R+G L +++ GCS F ++
Sbjct: 20 LLTTGLHSGRASLTVTTPEEDLVVVSGRTFTVRWNQDDDGSTTPGRFAIDLYQYQSYSMDEDSCGTWATALCPYGESGCLDSTGDYDVVLPEPAPDLSDSAYRIGVLGVEDGSFGCSDKFFLI 142 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1884.4698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1884.4698.1 >prot_H-paniculata_contig1884.4698.1 ID=prot_H-paniculata_contig1884.4698.1|Name=mRNA_H-paniculata_contig1884.4698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=267bp MALSRLITAASAAMAMVGMITNVAKAELRVIEPTLGSTVVAERPYSVVWAback to top mRNA from alignment at H-paniculata_contig1884:12482..16066- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1884.4698.1 ID=mRNA_H-paniculata_contig1884.4698.1|Name=mRNA_H-paniculata_contig1884.4698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3585bp|location=Sequence derived from alignment at H-paniculata_contig1884:12482..16066- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1884:12482..16066- >mRNA_H-paniculata_contig1884.4698.1 ID=mRNA_H-paniculata_contig1884.4698.1|Name=mRNA_H-paniculata_contig1884.4698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1602bp|location=Sequence derived from alignment at H-paniculata_contig1884:12482..16066- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |