mRNA_H-paniculata_contig18833.4694.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18833.4694.1
Unique NamemRNA_H-paniculata_contig18833.4694.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: D8LB83_ECTSI (WD-40 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB83_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 7.880e-14
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:   28 LSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVL 162
            +S GEDN IR+WDLRTRRCKVIFTGH+K +TCL+ L+++ S +VL
Sbjct: 2523 VSGGEDNQIRMWDLRTRRCKVIFTGHTKAITCLTALREDSSTLVL 2567
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BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: A0A6H5KB05_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB05_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 7.880e-14
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:   28 LSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVL 162
            +S GEDN IR+WDLRTRRCKVIFTGH+K +TCL+ L+++ S +VL
Sbjct: 2578 VSGGEDNQIRMWDLRTRRCKVIFTGHTKTITCLTALREDSSTLVL 2622
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BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: A0A6B2LG85_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LG85_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 5.190e-10
Identity = 28/64 (43.75%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    7 SLWLMFFLSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVLSGAKDCTVRLWD 198
             LW++   S G D TI+LW L +  CK+ FTGH KP++C+  L D+    ++SG++D T+R+WD
Sbjct:   58 KLWIV---SAG-DLTIKLWSLESLECKLTFTGHKKPISCVKFLDDHS---IVSGSQDHTLRIWD 114
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BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: A0A8C5BZU6_GADMO (F-box and WD repeat domain containing 10 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5BZU6_GADMO)

HSP 1 Score: 60.5 bits (145), Expect = 4.320e-9
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   28 LSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVLSGAKDCTVRLWD 198
            +S G D TIR W ++T  C ++ +GH+  VTCL    D  S+ ++SGAKDC V++WD
Sbjct:  290 ISAGYDLTIRCWSMKTSLCWMLLSGHTGTVTCL----DVHSDHLVSGAKDCRVKVWD 342
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BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: A0A8C4Z2Y3_GADMO (F-box and WD repeat domain containing 10 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4Z2Y3_GADMO)

HSP 1 Score: 60.5 bits (145), Expect = 4.330e-9
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   28 LSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVLSGAKDCTVRLWD 198
            +S G D TIR W ++T  C ++ +GH+  VTCL    D  S+ ++SGAKDC V++WD
Sbjct:  299 ISAGYDLTIRCWSMKTSLCWMLLSGHTGTVTCL----DVHSDHLVSGAKDCRVKVWD 351
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BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: A0A8C4Z562_GADMO (F-box and WD repeat domain containing 10 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4Z562_GADMO)

HSP 1 Score: 60.5 bits (145), Expect = 4.370e-9
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   28 LSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVLSGAKDCTVRLWD 198
            +S G D TIR W ++T  C ++ +GH+  VTCL    D  S+ ++SGAKDC V++WD
Sbjct:  467 ISAGYDLTIRCWSMKTSLCWMLLSGHTGTVTCL----DVHSDHLVSGAKDCRVKVWD 519
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BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: UPI0018E1F72A (F-box/WD repeat-containing protein 10 n=1 Tax=Cyprinodon tularosa TaxID=77115 RepID=UPI0018E1F72A)

HSP 1 Score: 58.9 bits (141), Expect = 1.510e-8
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   28 LSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVLSGAKDCTVRLW 195
            ++   D+ IR W++RT RC ++  GHS  + CL    D  +N ++SG+KDCTV++W
Sbjct:  242 ITAACDSNIRCWNIRTGRCDMVLCGHSGTINCL----DVHANSLVSGSKDCTVKVW 293
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BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: Q6CDT2_YARLI (YALI0B21406p n=4 Tax=Yarrowia TaxID=4951 RepID=Q6CDT2_YARLI)

HSP 1 Score: 58.5 bits (140), Expect = 1.990e-8
Identity = 26/72 (36.11%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:    7 SLWLMFFLSR-------GEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSN-VVLSGAKDCTVRLWD 198
             +W M F          G+D+ +R+W + T RC  +  G+ K V C+   +D R   +V+SGA+D TVR+WD
Sbjct:   76 GVWAMHFAHNLLATGGSGKDSDVRVWKVETGRCVAVLKGNKKTVRCVRVARDGRGKLIVVSGARDNTVRVWD 147
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BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: A0A6P7L422_BETSP (LOW QUALITY PROTEIN: F-box/WD repeat-containing protein 10 n=1 Tax=Betta splendens TaxID=158456 RepID=A0A6P7L422_BETSP)

HSP 1 Score: 54.3 bits (129), Expect = 6.500e-7
Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:   31 SRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVLSGAKDCTVRLWD 198
            +   D +IR W L+T RC+    GH+  VTCL    D     ++SGAKDC V++WD
Sbjct:  415 TASGDASIRCWSLKTDRCEAALYGHTGAVTCL----DVHGARLVSGAKDCRVKVWD 466
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BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: A0A175VVE1_9PEZI (F-box/WD repeat-containing protein 1A n=1 Tax=Madurella mycetomatis TaxID=100816 RepID=A0A175VVE1_9PEZI)

HSP 1 Score: 53.9 bits (128), Expect = 8.920e-7
Identity = 22/58 (37.93%), Postives = 34/58 (58.62%), Query Frame = 1 
Query:   22 FFLSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVLSGAKDCTVRLW 195
            + +S   D+T+++WDL+TRRC    T H   V CL    D   ++V+SG+ D  V +W
Sbjct:  353 YLVSGSRDHTLKVWDLKTRRCLRTLTRHKGSVLCLQFDSDPDEDLVVSGSSDSDVIIW 410
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB83_ECTSI7.880e-1466.67WD-40 repeat protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KB05_9PHAE7.880e-1466.67UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6B2LG85_9EUKA5.190e-1043.75Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A8C5BZU6_GADMO4.320e-945.61F-box and WD repeat domain containing 10 n=1 Tax=G... [more]
A0A8C4Z2Y3_GADMO4.330e-945.61F-box and WD repeat domain containing 10 n=1 Tax=G... [more]
A0A8C4Z562_GADMO4.370e-945.61F-box and WD repeat domain containing 10 n=1 Tax=G... [more]
UPI0018E1F72A1.510e-841.07F-box/WD repeat-containing protein 10 n=1 Tax=Cypr... [more]
Q6CDT2_YARLI1.990e-836.11YALI0B21406p n=4 Tax=Yarrowia TaxID=4951 RepID=Q6C... [more]
A0A6P7L422_BETSP6.500e-742.86LOW QUALITY PROTEIN: F-box/WD repeat-containing pr... [more]
A0A175VVE1_9PEZI8.920e-737.93F-box/WD repeat-containing protein 1A n=1 Tax=Madu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18833contigH-paniculata_contig18833:20..694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue3.6e-11
Seed eggNOG ortholog2880.D8LB83
Preferred nameSCD1
KEGG koko:K03361,ko:K20164
KEGG Pathwayko04111,ko04120,map04111,map04120
KEGG ModuleM00407
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000278,GO:0000281,GO:0000819,GO:0000910,GO:0000911,GO:0001568,GO:0001570,GO:0001932,GO:0001934,GO:0001944,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003700,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005886,GO:0006275,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007166,GO:0007176,GO:0007219,GO:0007275,GO:0008150,GO:0008152,GO:0008156,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009791,GO:0009825,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010235,GO:0010374,GO:0010440,GO:0010468,GO:0010469,GO:0010498,GO:0010506,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010594,GO:0010604,GO:0010605,GO:0010632,GO:0010638,GO:0010646,GO:0010647,GO:0010721,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010948,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022603,GO:0023051,GO:0023052,GO:0023056,GO:0030135,GO:0030136,GO:0030154,GO:0030162,GO:0030163,GO:0030234,GO:0030323,GO:0030324,GO:0030332,GO:0030334,GO:0030674,GO:0031146,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031461,GO:0031625,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032446,GO:0032501,GO:0032502,GO:0032506,GO:0032875,GO:0032876,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033157,GO:0033554,GO:0033674,GO:0034644,GO:0035239,GO:0035295,GO:0036211,GO:0040007,GO:0040012,GO:0042058,GO:0042176,GO:0042325,GO:0042327,GO:0042802,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043408,GO:0043410,GO:0043412,GO:0043523,GO:0043525,GO:0043535,GO:0043549,GO:0043632,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045670,GO:0045671,GO:0045732,GO:0045741,GO:0045742,GO:0045765,GO:0045786,GO:0045824,GO:0045859,GO:0045860,GO:0045862,GO:0045934,GO:0045937,GO:0048471,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050731,GO:0050776,GO:0050777,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050816,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051093,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051222,GO:0051223,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051270,GO:0051276,GO:0051301,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051716,GO:0051726,GO:0055106,GO:0060090,GO:0060255,GO:0060284,GO:0060341,GO:0060541,GO:0061097,GO:0061098,GO:0061136,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070372,GO:0070374,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071944,GO:0072358,GO:0072359,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090049,GO:0090087,GO:0090316,GO:0090329,GO:0090558,GO:0097027,GO:0097708,GO:0098772,GO:0098813,GO:0104004,GO:0140096,GO:0140110,GO:1900407,GO:1900409,GO:1901184,GO:1901186,GO:1901214,GO:1901216,GO:1901342,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1902105,GO:1902106,GO:1902175,GO:1902177,GO:1902410,GO:1902494,GO:1902531,GO:1902533,GO:1902882,GO:1902884,GO:1903010,GO:1903011,GO:1903025,GO:1903026,GO:1903047,GO:1903050,GO:1903052,GO:1903146,GO:1903201,GO:1903203,GO:1903209,GO:1903214,GO:1903223,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903376,GO:1903378,GO:1903506,GO:1903533,GO:1903670,GO:1903706,GO:1903707,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1903955,GO:1904951,GO:1990234,GO:1990452,GO:2000026,GO:2000058,GO:2000060,GO:2000104,GO:2000112,GO:2000113,GO:2000145,GO:2000273,GO:2000677,GO:2000678,GO:2001141,GO:2001204,GO:2001205,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG0274@1,KOG0274@2759,KOG2127@1,KOG2127@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121,ko04131
Exons2
Model size198
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18833.4694.1prot_H-paniculata_contig18833.4694.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18833 20..676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929449.3092382-CDS-H-paniculata_contig18833:19..431622929449.3092382-CDS-H-paniculata_contig18833:19..43Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18833 20..43 -
1691480866.0760696-CDS-H-paniculata_contig18833:19..431691480866.0760696-CDS-H-paniculata_contig18833:19..43Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18833 20..43 -
1622929449.3497238-CDS-H-paniculata_contig18833:520..6761622929449.3497238-CDS-H-paniculata_contig18833:520..676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18833 521..676 -
1691480866.0889857-CDS-H-paniculata_contig18833:520..6761691480866.0889857-CDS-H-paniculata_contig18833:520..676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18833 521..676 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929449.3621316-UTR-H-paniculata_contig18833:676..6941622929449.3621316-UTR-H-paniculata_contig18833:676..694Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18833 677..694 -
1691480866.098804-UTR-H-paniculata_contig18833:676..6941691480866.098804-UTR-H-paniculata_contig18833:676..694Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18833 677..694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18833.4694.1

>prot_H-paniculata_contig18833.4694.1 ID=prot_H-paniculata_contig18833.4694.1|Name=mRNA_H-paniculata_contig18833.4694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MFFLSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVLSG
AKDCTVRLWD
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mRNA from alignment at H-paniculata_contig18833:20..694-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18833.4694.1 ID=mRNA_H-paniculata_contig18833.4694.1|Name=mRNA_H-paniculata_contig18833.4694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=675bp|location=Sequence derived from alignment at H-paniculata_contig18833:20..694- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTATTCGCTGTGGTTGATGTTTTTCTTGAGCAGGGGAGAGGACAACAC
AATACGCTTGTGGGATCTGCGAACACGTCGCTGTAAGGTCATCTTTACAG
GCCACTCCAAGCCGGTGACTTGTCTCAGCGAGCTAAAGGACAACCGCAGC
AACGTGGTCCTCAGCGGTGCAAAGGTAGGTGCATGGTGATGATTTTTCAG
GCTGGGATTACTCGAGGTGTATTTCAATTATGTCGTCGCTTGTACGTTAT
CGCTGGGTCTCTTTCCCCGACTTGAAAAAACGTTGTGGTTGCGAGAGTTG
GTGTCCCGTACGCGAGGGCTCAGTCCGCTTTTTCGTCATTTTGTCGGCTG
TCTTCCGTCCGAAAAAAGTATGTGTCAATTAGATGATTCTGAAGTTTGTA
CAATTCCCATCGTTTTATATATCCAAGCATCTAATTCCATCAAATAGCGT
TGGACTCGTCAGGTAACTCGCATGTTACTCAGTGGTGGTCAAAGGGTGAA
TACTTTTTGTTTGTCACCTTTTTCTGTCTCAAACCTGGGACGACACGTCC
CGTCCCACCTCTCTAGTTTCCCTGTGCATTTGTCTTTTGGGGTGCTCGTG
AACGCTTCCCTTGCTGGTCCTGTGCTTTTGGTGCGTTGGCTGTGACAACA
GGATTGCACCGTGCGCTTGTGGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig18833:20..694-

>mRNA_H-paniculata_contig18833.4694.1 ID=mRNA_H-paniculata_contig18833.4694.1|Name=mRNA_H-paniculata_contig18833.4694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig18833:20..694- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTTTCTTGAGCAGGGGAGAGGACAACACAATACGCTTGTGGGATCT
GCGAACACGTCGCTGTAAGGTCATCTTTACAGGCCACTCCAAGCCGGTGA
CTTGTCTCAGCGAGCTAAAGGACAACCGCAGCAACGTGGTCCTCAGCGGT
GCAAAGATGTTTTTCTTGAGCAGGGGAGAGGACAACACAATACGCTTGTG
GGATCTGCGAACACGTCGCTGTAAGGTCATCTTTACAGGCCACTCCAAGC
CGGTGACTTGTCTCAGCGAGCTAAAGGACAACCGCAGCAACGTGGTCCTC
AGCGGTGCAAAGGATTGCACCGTGCGCTTGTGGGACGATTGCACCGTGCG
CTTGTGGGAC
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