prot_H-paniculata_contig18833.4694.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig18833.4694.1
Unique Nameprot_H-paniculata_contig18833.4694.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length60
Homology
BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: D8LB83_ECTSI (WD-40 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB83_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.130e-13
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 0
Query:    4 LSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVL 48
            +S GEDN IR+WDLRTRRCKVIFTGH+K +TCL+ L+++ S +VL
Sbjct: 2523 VSGGEDNQIRMWDLRTRRCKVIFTGHTKAITCLTALREDSSTLVL 2567          
BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: A0A6H5KB05_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB05_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.130e-13
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 0
Query:    4 LSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVL 48
            +S GEDN IR+WDLRTRRCKVIFTGH+K +TCL+ L+++ S +VL
Sbjct: 2578 VSGGEDNQIRMWDLRTRRCKVIFTGHTKTITCLTALREDSSTLVL 2622          
BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: A0A6B2LG85_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LG85_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 8.000e-10
Identity = 26/60 (43.33%), Postives = 42/60 (70.00%), Query Frame = 0
Query:    1 MFFLSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVLSGAKDCTVRLWD 60
            ++ +S G D TI+LW L +  CK+ FTGH KP++C+  L D+    ++SG++D T+R+WD
Sbjct:   59 LWIVSAG-DLTIKLWSLESLECKLTFTGHKKPISCVKFLDDHS---IVSGSQDHTLRIWD 114          
BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: A0A8C5BZU6_GADMO (F-box and WD repeat domain containing 10 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5BZU6_GADMO)

HSP 1 Score: 59.7 bits (143), Expect = 6.280e-9
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 0
Query:    4 LSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVLSGAKDCTVRLWD 60
            +S G D TIR W ++T  C ++ +GH+  VTCL    D  S+ ++SGAKDC V++WD
Sbjct:  290 ISAGYDLTIRCWSMKTSLCWMLLSGHTGTVTCL----DVHSDHLVSGAKDCRVKVWD 342          
BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: A0A8C4Z562_GADMO (F-box and WD repeat domain containing 10 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4Z562_GADMO)

HSP 1 Score: 59.7 bits (143), Expect = 6.330e-9
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 0
Query:    4 LSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVLSGAKDCTVRLWD 60
            +S G D TIR W ++T  C ++ +GH+  VTCL    D  S+ ++SGAKDC V++WD
Sbjct:  467 ISAGYDLTIRCWSMKTSLCWMLLSGHTGTVTCL----DVHSDHLVSGAKDCRVKVWD 519          
BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: Q6CDT2_YARLI (YALI0B21406p n=4 Tax=Yarrowia TaxID=4951 RepID=Q6CDT2_YARLI)

HSP 1 Score: 57.4 bits (137), Expect = 3.990e-8
Identity = 23/55 (41.82%), Postives = 36/55 (65.45%), Query Frame = 0
Query:    7 GEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSN-VVLSGAKDCTVRLWD 60
            G+D+ +R+W + T RC  +  G+ K V C+   +D R   +V+SGA+D TVR+WD
Sbjct:   93 GKDSDVRVWKVETGRCVAVLKGNKKTVRCVRVARDGRGKLIVVSGARDNTVRVWD 147          
BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: W5N6G1_LEPOC (CMT1A duplicated region transcript 1 n=4 Tax=Lepisosteidae TaxID=7915 RepID=W5N6G1_LEPOC)

HSP 1 Score: 55.8 bits (133), Expect = 1.450e-7
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 0
Query:    2 FFLSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVLSGAKDCTVRLWD 60
            F +S   D +IR W+L+T  C  IF GH   ++CL    D   N ++SGAKDC V++W+
Sbjct:  460 FVISASYDLSIRCWNLQTGACMKIFRGHLGTISCL----DLHGNRLVSGAKDCKVKVWN 514          
BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: UPI001BD2886F (LOW QUALITY PROTEIN: CMT1A duplicated region transcript 1 protein n=1 Tax=Cheilinus undulatus TaxID=241271 RepID=UPI001BD2886F)

HSP 1 Score: 53.9 bits (128), Expect = 6.910e-7
Identity = 23/56 (41.07%), Postives = 36/56 (64.29%), Query Frame = 0
Query:    4 LSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVLSGAKDCTVRLW 59
            +S   D++IR W+L+T  C +I  GH++ V CL    D   + ++SGAKDC V++W
Sbjct:  398 ISASWDSSIRCWNLKTDTCLMILYGHTRAVNCL----DVHGDRLVSGAKDCLVKVW 449          
BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: UPI001B3B1873 (LOW QUALITY PROTEIN: F-box/WD repeat-containing protein 10 n=1 Tax=Toxotes jaculatrix TaxID=941984 RepID=UPI001B3B1873)

HSP 1 Score: 53.9 bits (128), Expect = 6.910e-7
Identity = 23/57 (40.35%), Postives = 40/57 (70.18%), Query Frame = 0
Query:    4 LSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVLSGAKDCTVRLWD 60
            ++   D +IR W+L+T RC+++  GH+  V CL ++ D+R   ++SGAKDC V++W+
Sbjct:  393 ITASCDASIRCWNLKTDRCEMVLYGHTGTVNCL-DVHDDR---LVSGAKDCLVKVWN 445          
BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Match: A0A4W6E2N2_LATCA (F-box and WD repeat domain containing 10 n=4 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6E2N2_LATCA)

HSP 1 Score: 53.5 bits (127), Expect = 9.420e-7
Identity = 22/57 (38.60%), Postives = 38/57 (66.67%), Query Frame = 0
Query:    4 LSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVLSGAKDCTVRLWD 60
            ++   D +IR W+L+T RC+++  GH+  V CL    D  ++ ++SGAKDC V++W+
Sbjct:  307 ITASCDASIRCWNLKTDRCEMVLYGHTGTVNCL----DVHADRLVSGAKDCIVKVWN 359          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18833.4694.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB83_ECTSI1.130e-1366.67WD-40 repeat protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KB05_9PHAE1.130e-1366.67UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6B2LG85_9EUKA8.000e-1043.33Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A8C5BZU6_GADMO6.280e-945.61F-box and WD repeat domain containing 10 n=1 Tax=G... [more]
A0A8C4Z562_GADMO6.330e-945.61F-box and WD repeat domain containing 10 n=1 Tax=G... [more]
Q6CDT2_YARLI3.990e-841.82YALI0B21406p n=4 Tax=Yarrowia TaxID=4951 RepID=Q6C... [more]
W5N6G1_LEPOC1.450e-742.37CMT1A duplicated region transcript 1 n=4 Tax=Lepis... [more]
UPI001BD2886F6.910e-741.07LOW QUALITY PROTEIN: CMT1A duplicated region trans... [more]
UPI001B3B18736.910e-740.35LOW QUALITY PROTEIN: F-box/WD repeat-containing pr... [more]
A0A4W6E2N2_LATCA9.420e-738.60F-box and WD repeat domain containing 10 n=4 Tax=L... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 19..60
e-value: 7.9E-7
score: 38.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 21..60
e-value: 1.9E-8
score: 34.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..25
score: 10.308
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 26..60
score: 13.182
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..60
e-value: 3.1E-17
score: 64.2
NoneNo IPR availablePANTHERPTHR19879TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 2..60
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..60
score: 19.565
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 3..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18833contigH-paniculata_contig18833:20..676 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18833.4694.1mRNA_H-paniculata_contig18833.4694.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig18833 20..694 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig18833.4694.1 ID=prot_H-paniculata_contig18833.4694.1|Name=mRNA_H-paniculata_contig18833.4694.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MFFLSRGEDNTIRLWDLRTRRCKVIFTGHSKPVTCLSELKDNRSNVVLSG
AKDCTVRLWD
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf