mRNA_H-paniculata_contig18805.4678.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18805.4678.1
Unique NamemRNA_H-paniculata_contig18805.4678.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18805.4678.1 vs. uniprot
Match: T2MJ92_HYDVU (Heat shock 70 kDa protein 12A n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2MJ92_HYDVU)

HSP 1 Score: 63.5 bits (153), Expect = 8.690e-10
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   22 PLLRVTVAVLRRFKEDALSQLASVNVVALGVEDVTWVVTILAVYDDFGKCFMCVAAHEVGIISPVDSSPLQFCLEPEAASL 264
            P L+V    L+ FKE  L++L+  +   L  ED+TWV+T+ A++    K FM  AA+E GI SP     L   LEPEAAS+
Sbjct:  458 PALKVFTYALKFFKEHVLAELSDQSTAQLCEEDITWVLTVPAIWRQPAKQFMRTAAYEAGIASPAHPDRLLIALEPEAASI 538          
BLAST of mRNA_H-paniculata_contig18805.4678.1 vs. uniprot
Match: A0A7M5X6R9_9CNID (Uncharacterized protein n=2 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X6R9_9CNID)

HSP 1 Score: 61.2 bits (147), Expect = 5.670e-9
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = 1
Query:    1 AETKQSTPLLRVTVAVLRRFKEDALSQLASVNVVALGVEDVTWVVTILAVYDDFGKCFMCVAAHEVGIISPVDSSPLQFCLEPEAASL 264
            A   ++ P L+V    LR FK+  L +L+  +   L  ED+TWVVT+ A++    K FM  AA+E GI S      L   LEPEAAS+
Sbjct:  568 AANGKAYPALKVFAHALRFFKQHVLEELSDQSTAKLSEEDITWVVTVPAIWRQPAKQFMRTAAYEAGIASLSHPDRLLIALEPEAASI 655          
BLAST of mRNA_H-paniculata_contig18805.4678.1 vs. uniprot
Match: UPI0010A03E60 (heat shock 70 kDa protein 12A-like isoform X1 n=2 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=UPI0010A03E60)

HSP 1 Score: 58.9 bits (141), Expect = 3.580e-8
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   22 PLLRVTVAVLRRFKEDALSQL-ASVNVVALGVEDVTWVVTILAVYDDFGKCFMCVAAHEVGIISPVDSSPLQFCLEPEAASL 264
            P L V    L+  K+ AL  +  + +++    EDVTWV+T+ A+++   K FM VAA E G+I  +DS  L   LEPEAAS+
Sbjct:  108 PALMVFSESLQYLKDHALKTINVTDDIIKYTAEDVTWVLTVPAIWEPAAKQFMRVAAQEAGLIKSIDSENLVIALEPEAASM 189          
BLAST of mRNA_H-paniculata_contig18805.4678.1 vs. uniprot
Match: A0A8C6Z0P1_NOTPE (Heat shock 70 kDa protein 12A-like n=5 Tax=Nothoprocta perdicaria TaxID=30464 RepID=A0A8C6Z0P1_NOTPE)

HSP 1 Score: 58.5 bits (140), Expect = 4.930e-8
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 1
Query:    1 AETKQSTPLLRVTVAVLRRFKEDALSQLASVNVVAL-GVEDVTWVVTILAVYDDFGKCFMCVAAHEVGIISPVDSSPLQFCLEPEAASL 264
            A   +  P L+V    LR   E ALS + S +   + G  DVTWV+T+ A+++   K FM +AA E G+IS + S  L   LEPEAASL
Sbjct:  171 ASNGKKLPALKVFSESLRYMMEHALSNIESASFQKVCGCSDVTWVLTVPAIWNAAAKQFMRLAAKEAGLISDMLSEKLIIALEPEAASL 259          
BLAST of mRNA_H-paniculata_contig18805.4678.1 vs. uniprot
Match: A0A7K7WM34_9AVES (HS12B protein (Fragment) n=6 Tax=Tinamidae TaxID=8803 RepID=A0A7K7WM34_9AVES)

HSP 1 Score: 57.0 bits (136), Expect = 6.280e-8
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 1
Query:    1 AETKQSTPLLRVTVAVLRRFKEDALSQLASVNVVALGVE-DVTWVVTILAVYDDFGKCFMCVAAHEVGIISPVDSSPLQFCLEPEAASL 264
            A   +  P L+V    LR   E ALS + S +   + V  +VTWV+T+ A+++   K FM +AA E G+IS + S  L   LEPEAASL
Sbjct:   97 ASNGKKLPALKVFSESLRYMMEHALSNIESASFQTVCVHNEVTWVITVPAIWNAAAKQFMRLAAKEAGLISDMLSEKLVIALEPEAASL 185          
BLAST of mRNA_H-paniculata_contig18805.4678.1 vs. uniprot
Match: UPI0013F22A75 (heat shock 70 kDa protein 12B-like isoform X2 n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=UPI0013F22A75)

HSP 1 Score: 57.4 bits (137), Expect = 1.190e-7
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 1
Query:    1 AETKQSTPLLRVTVAVLRRFKEDALSQ-LASVNVVALGVEDVTWVVTILAVYDDFGKCFMCVAAHEVGIISPVDSSPLQFCLEPEAASL 264
            A+  +  P L+V    LR  K+ AL+  L + +      EDVTWV+T+ A++D   + FM +AA E G+IS + S  L   LEPEAAS+
Sbjct:  106 ADNGKKFPALKVFSESLRYMKDHALNTILEASSQTVYDTEDVTWVITVPAIWDVSARQFMRLAAKEAGLISDMFSEKLIIALEPEAASV 194          
BLAST of mRNA_H-paniculata_contig18805.4678.1 vs. uniprot
Match: M7C7L6_CHEMY (Heat shock 70 kDa protein 12A n=1 Tax=Chelonia mydas TaxID=8469 RepID=M7C7L6_CHEMY)

HSP 1 Score: 57.4 bits (137), Expect = 1.240e-7
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   22 PLLRVTVAVLRRFKEDALSQLASVNVVALGV-EDVTWVVTILAVYDDFGKCFMCVAAHEVGIISPVDSSPLQFCLEPEAASL 264
            P L+V    LR  K+ AL+ +   +   + V EDVTWV+T+ A++D   + FM +AA E G+IS + S  L   LEPEAAS+
Sbjct:  111 PALKVFSESLRYMKDHALNTIREASYQTVYVTEDVTWVITVPAIWDASARQFMRLAAKEAGLISDMFSEQLIIALEPEAASV 192          
BLAST of mRNA_H-paniculata_contig18805.4678.1 vs. uniprot
Match: A0A8C8RBG9_9SAUR (Uncharacterized protein n=2 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8RBG9_9SAUR)

HSP 1 Score: 57.4 bits (137), Expect = 1.250e-7
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1
Query:    1 AETKQSTPLLRVTVAVLRRFKEDALSQLASVNVVAL-GVEDVTWVVTILAVYDDFGKCFMCVAAHEVGIISPVDSSPLQFCLEPEAASL 264
            A+  +  P L+V    LR  K+ AL+ +   +   +   EDVTWV+T+ A++D   + FM +AA E G+I+ + S  L   LEPEAAS+
Sbjct:  135 ADNGKRFPALKVFSESLRYMKDHALNTIGEASYQTIYDTEDVTWVITVPAIWDTSARQFMRLAAKEAGLITDMFSEKLIIALEPEAASV 223          
BLAST of mRNA_H-paniculata_contig18805.4678.1 vs. uniprot
Match: UPI00052240C3 (heat shock 70 kDa protein 12B-like n=2 Tax=Neognathae TaxID=8825 RepID=UPI00052240C3)

HSP 1 Score: 57.0 bits (136), Expect = 1.710e-7
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 1
Query:    1 AETKQSTPLLRVTVAVLRRFKEDALSQLASVNVVAL-GVEDVTWVVTILAVYDDFGKCFMCVAAHEVGIISPVDSSPLQFCLEPEAASL 264
            A   +  P L V    LR  KE AL+ +   +   + G E++TWV+T+ A++    + FM +AA E G+IS + S  L   LEPEAASL
Sbjct:  104 ASNGKMLPALTVFTESLRYLKEHALNTIQEASFQTICGPEEITWVITVPAIWSAAARQFMRLAAKEAGLISDMISEKLIIALEPEAASL 192          
BLAST of mRNA_H-paniculata_contig18805.4678.1 vs. uniprot
Match: A0A8C3IAT1_CHRPI (Uncharacterized protein n=16 Tax=Durocryptodira TaxID=1579337 RepID=A0A8C3IAT1_CHRPI)

HSP 1 Score: 57.0 bits (136), Expect = 1.710e-7
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 1
Query:    1 AETKQSTPLLRVTVAVLRRFKEDALSQLASVNVVAL-GVEDVTWVVTILAVYDDFGKCFMCVAAHEVGIISPVDSSPLQFCLEPEAASL 264
            A+  +  P L+V    LR  K+ AL+ +   +   +   EDVTWV+T+ A++D   + FM +AA E G IS + S  L   LEPEAAS+
Sbjct:  117 ADNGKKFPALKVFSESLRYMKDHALNTIRDTSYQTVYDTEDVTWVITVPAIWDASARQFMRLAAKEAGFISDMFSEKLIIALEPEAASV 205          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18805.4678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
T2MJ92_HYDVU8.690e-1043.21Heat shock 70 kDa protein 12A n=1 Tax=Hydra vulgar... [more]
A0A7M5X6R9_9CNID5.670e-940.91Uncharacterized protein n=2 Tax=Clytia hemisphaeri... [more]
UPI0010A03E603.580e-841.46heat shock 70 kDa protein 12A-like isoform X1 n=2 ... [more]
A0A8C6Z0P1_NOTPE4.930e-842.70Heat shock 70 kDa protein 12A-like n=5 Tax=Nothopr... [more]
A0A7K7WM34_9AVES6.280e-841.57HS12B protein (Fragment) n=6 Tax=Tinamidae TaxID=8... [more]
UPI0013F22A751.190e-740.45heat shock 70 kDa protein 12B-like isoform X2 n=1 ... [more]
M7C7L6_CHEMY1.240e-742.68Heat shock 70 kDa protein 12A n=1 Tax=Chelonia myd... [more]
A0A8C8RBG9_9SAUR1.250e-738.20Uncharacterized protein n=2 Tax=Pelusios castaneus... [more]
UPI00052240C31.710e-739.33heat shock 70 kDa protein 12B-like n=2 Tax=Neognat... [more]
A0A8C3IAT1_CHRPI1.710e-739.33Uncharacterized protein n=16 Tax=Durocryptodira Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18805contigH-paniculata_contig18805:799..1062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score62.8
Seed ortholog evalue9.4e-08
Seed eggNOG ortholog6087.XP_002155076.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP binding
EggNOG OGs38CTR@33154,3BB5B@33208,COG0443@1,KOG0101@2759
COG Functional cat.O
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929447.6235545-CDS-H-paniculata_contig18805:798..10621622929447.6235545-CDS-H-paniculata_contig18805:798..1062Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18805 799..1062 -
1691480865.311044-CDS-H-paniculata_contig18805:798..10621691480865.311044-CDS-H-paniculata_contig18805:798..1062Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18805 799..1062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18805.4678.1prot_H-paniculata_contig18805.4678.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18805 799..1062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18805.4678.1

>prot_H-paniculata_contig18805.4678.1 ID=prot_H-paniculata_contig18805.4678.1|Name=mRNA_H-paniculata_contig18805.4678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
AETKQSTPLLRVTVAVLRRFKEDALSQLASVNVVALGVEDVTWVVTILAV
YDDFGKCFMCVAAHEVGIISPVDSSPLQFCLEPEAASL
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mRNA from alignment at H-paniculata_contig18805:799..1062-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18805.4678.1 ID=mRNA_H-paniculata_contig18805.4678.1|Name=mRNA_H-paniculata_contig18805.4678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at H-paniculata_contig18805:799..1062- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGAGACCAAACAAAGTACGCCTCTGCTGCGTGTCACGGTCGCGGTTCT TAGGCGCTTCAAAGAAGATGCACTATCTCAGCTAGCCTCTGTTAATGTGG TGGCTCTTGGCGTGGAAGACGTAACATGGGTGGTGACTATTCTCGCTGTT TATGACGATTTCGGAAAGTGCTTCATGTGCGTTGCGGCGCACGAGGTCGG TATCATCAGCCCCGTGGACAGCTCGCCGCTTCAATTCTGCCTCGAACCGG AGGCGGCCAGTCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig18805:799..1062-

>mRNA_H-paniculata_contig18805.4678.1 ID=mRNA_H-paniculata_contig18805.4678.1|Name=mRNA_H-paniculata_contig18805.4678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig18805:799..1062- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGAGACCAAACAAAGTACGCCTCTGCTGCGTGTCACGGTCGCGGTTCT
TAGGCGCTTCAAAGAAGATGCACTATCTCAGCTAGCCTCTGTTAATGTGG
TGGCTCTTGGCGTGGAAGACGTAACATGGGTGGTGACTATTCTCGCTGTT
TATGACGATTTCGGAAAGTGCTTCATGTGCGTTGCGGCGCACGAGGTCGG
TATCATCAGCCCCGTGGACAGCTCGCCGCTTCAATTCTGCCTCGAACCGG
AGGCGGCCAGTCTCGCTGAGACCAAACAAAGTACGCCTCTGCTGCGTGTC
ACGGTCGCGGTTCTTAGGCGCTTCAAAGAAGATGCACTATCTCAGCTAGC
CTCTGTTAATGTGGTGGCTCTTGGCGTGGAAGACGTAACATGGGTGGTGA
CTATTCTCGCTGTTTATGACGATTTCGGAAAGTGCTTCATGTGCGTTGCG
GCGCACGAGGTCGGTATCATCAGCCCCGTGGACAGCTCGCCGCTTCAATT
CTGCCTCGAACCGGAGGCGGCCAGTCTC
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