prot_H-paniculata_contig188.4673.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig188.4673.1
Unique Nameprot_H-paniculata_contig188.4673.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length135
Homology
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A371HD92_MUCPR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371HD92_MUCPR)

HSP 1 Score: 60.5 bits (145), Expect = 1.300e-8
Identity = 43/150 (28.67%), Postives = 74/150 (49.33%), Query Frame = 0
Query:    8 LRLKYRVKDLGEASYYMGCHIIHNREKKELKFDQHLYAQTITDHFEINKTA------VKEDE---SQTPE---EKEEMGGIPYHKTVGG-----------WKAVVKILQYVRRTQGMGIPFGGDRNGRIEMPAFADSNHATCPDTRRSES 134
            L   + +KDLGE S+ +G  I+ +  +  L+  Q  Y   + + F +  +        K D+    Q P    E+ EM  IPY  TVG            WKAV ++++Y+RRT+G  + +   ++  +E+  ++DS+ A C D++ S S
Sbjct:   27 LTKNFEMKDLGEVSFVLGIQILRDHSQGILRLSQENYISKVLERFGMKDSKPGDTPIAKGDKFSLKQCPNNDLERNEMQKIPYASTVGSLMYLNDPGMQHWKAVKRVMRYLRRTKGYMLTYR--KSEGLEIIMYSDSDFAGCQDSKHSTS 174          
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A438KJI9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KJI9_VITVI)

HSP 1 Score: 59.3 bits (142), Expect = 1.380e-7
Identity = 40/125 (32.00%), Postives = 63/125 (50.40%), Query Frame = 0
Query:   12 YRVKDLGEASYYMGCHIIHNREKKELKFDQHLYA-QTITDHFEINKTAVKEDESQTPEEKEEMGGIPYHKTVGGWKAVVKILQYVRRTQGMGIPFGGDRNGRIEMPAFADSNHATCPDTRRSESG 135
            +++KDLG   Y++G  +   R  K +   Q  YA Q ++D   +     K       +  ++ G +    ++        +LQYV+ T G G+ +    +  IE+ AFADS+ ATCPDTRRS SG
Sbjct:  930 FKLKDLGNLKYFLGLEV--GRSSKGISVSQRHYALQLLSDTGYLGCKTRKTPMDPNVKFSQDEGDLLDDPSIYRRMIAYHVLQYVKATVGQGLFYSS--SSTIELKAFADSDWATCPDTRRSISG 1050          
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A371HKB6_MUCPR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371HKB6_MUCPR)

HSP 1 Score: 57.4 bits (137), Expect = 5.320e-7
Identity = 45/170 (26.47%), Postives = 74/170 (43.53%), Query Frame = 0
Query:    8 LRLKYRVKDLGEASYYMGCHIIHNREKKELKFDQHLYAQTITDHFEINKTA------VKEDE---SQTPE---EKEEMGGIPYHKTVGG------------------------------WKAVVKILQYVRRTQGMGIPFGGDRNGRIEMPAFADSNHATCPDTRRSESG 135
            L   + +KD+GEAS+ +G HI+ +R +  L+  Q  Y   + + F+   +        K D+   +Q P    E+ EM  IPY   VG                               WKAV +++ Y+RRT+G    +    +  +E+  ++DS+ A C   +RS SG
Sbjct:   90 LTKNFEIKDIGEASFVLGIHILRDRSQGILRLSQENYISKVLERFDKKDSKPGDTLIAKRDKFSLNQCPNNDLERNEMQKIPYASVVGSLMYAQVCTRPDITFVVGVLGRYLSDLEMQHWKAVKRVIHYLRRTKGHMRTYRNSED--LEIIGYSDSDFAGCQLNKRSTSG 257          
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A438KDE1_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KDE1_VITVI)

HSP 1 Score: 55.1 bits (131), Expect = 4.070e-6
Identity = 41/129 (31.78%), Postives = 66/129 (51.16%), Query Frame = 0
Query:   12 YRVKDLGEASYYMGCHIIHNREKKELKFDQHLYA-QTITDH----FEINKTAVKEDESQTPEEKEEMGGIPYHKTVGGWKAVVKILQYVRRTQGMGIPFGGDRNGRIEMPAFADSNHATCPDTRRSESG 135
            +++KDLG   Y++G  +   R  K +   Q  YA Q + D      +  KT +  +   + +E + +     ++ + G+     +LQYV  T G G+ +    +  IE+ AFADS+ A CPDTRRS SG
Sbjct:  626 FKLKDLGNLKYFLGLEV--GRSSKGISVSQRHYALQLLFDTGYLGCKTRKTPMDPNVKLSHDEGDLLDDPSMYRRMIGYH----VLQYVEATVGQGLFYSS--SSAIELKAFADSDWAACPDTRRSISG 746          
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A438IRS6_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IRS6_VITVI)

HSP 1 Score: 54.7 bits (130), Expect = 5.350e-6
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:   86 KAVVKILQYVRRTQGMGIPFGGDRNGRIEMPAFADSNHATCPDTRRSESG 135
            +AV  ILQY++RT G G+ F    N ++++ AFA+S+ A+CPDTRRS SG
Sbjct:  514 QAVFHILQYIKRTLGQGLFFSS--NSKVQLKAFANSDWASCPDTRRSISG 561          
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A438IUI2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IUI2_VITVI)

HSP 1 Score: 53.1 bits (126), Expect = 1.870e-5
Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 0
Query:   86 KAVVKILQYVRRTQGMGIPFGGDRNGRIEMPAFADSNHATCPDTRR 131
            + V +ILQY++RT G G+ F    N ++++ AFADS+ A+CPDTRR
Sbjct:  604 QVVFRILQYIKRTPGQGLFFSS--NSKVQLKAFADSDWASCPDTRR 647          
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A438DZC0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DZC0_VITVI)

HSP 1 Score: 53.1 bits (126), Expect = 1.940e-5
Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 0
Query:   86 KAVVKILQYVRRTQGMGIPFGGDRNGRIEMPAFADSNHATCPDTRR 131
            + V +ILQY++RT G G+ F    N ++++ AFADS+ A+CPDTRR
Sbjct:  928 QVVFRILQYIKRTPGQGLFFSS--NSKVQLKAFADSDWASCPDTRR 971          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A371HD92_MUCPR1.300e-828.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438KJI9_VITVI1.380e-732.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A371HKB6_MUCPR5.320e-726.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438KDE1_VITVI4.070e-631.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A438IRS6_VITVI5.350e-652.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A438IUI2_VITVI1.870e-550.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A438DZC0_VITVI1.940e-550.00Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig188contigH-paniculata_contig188:19363..19767 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig188.4673.1mRNA_H-paniculata_contig188.4673.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig188 19363..20406 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig188.4673.1 ID=prot_H-paniculata_contig188.4673.1|Name=mRNA_H-paniculata_contig188.4673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
MEALVGDLRLKYRVKDLGEASYYMGCHIIHNREKKELKFDQHLYAQTITD
HFEINKTAVKEDESQTPEEKEEMGGIPYHKTVGGWKAVVKILQYVRRTQG
MGIPFGGDRNGRIEMPAFADSNHATCPDTRRSESG
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