prot_H-paniculata_contig188.4673.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A371HD92_MUCPR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371HD92_MUCPR) HSP 1 Score: 60.5 bits (145), Expect = 1.300e-8 Identity = 43/150 (28.67%), Postives = 74/150 (49.33%), Query Frame = 0
Query: 8 LRLKYRVKDLGEASYYMGCHIIHNREKKELKFDQHLYAQTITDHFEINKTA------VKEDE---SQTPE---EKEEMGGIPYHKTVGG-----------WKAVVKILQYVRRTQGMGIPFGGDRNGRIEMPAFADSNHATCPDTRRSES 134
L + +KDLGE S+ +G I+ + + L+ Q Y + + F + + K D+ Q P E+ EM IPY TVG WKAV ++++Y+RRT+G + + ++ +E+ ++DS+ A C D++ S S
Sbjct: 27 LTKNFEMKDLGEVSFVLGIQILRDHSQGILRLSQENYISKVLERFGMKDSKPGDTPIAKGDKFSLKQCPNNDLERNEMQKIPYASTVGSLMYLNDPGMQHWKAVKRVMRYLRRTKGYMLTYR--KSEGLEIIMYSDSDFAGCQDSKHSTS 174
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A438KJI9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KJI9_VITVI) HSP 1 Score: 59.3 bits (142), Expect = 1.380e-7 Identity = 40/125 (32.00%), Postives = 63/125 (50.40%), Query Frame = 0
Query: 12 YRVKDLGEASYYMGCHIIHNREKKELKFDQHLYA-QTITDHFEINKTAVKEDESQTPEEKEEMGGIPYHKTVGGWKAVVKILQYVRRTQGMGIPFGGDRNGRIEMPAFADSNHATCPDTRRSESG 135
+++KDLG Y++G + R K + Q YA Q ++D + K + ++ G + ++ +LQYV+ T G G+ + + IE+ AFADS+ ATCPDTRRS SG
Sbjct: 930 FKLKDLGNLKYFLGLEV--GRSSKGISVSQRHYALQLLSDTGYLGCKTRKTPMDPNVKFSQDEGDLLDDPSIYRRMIAYHVLQYVKATVGQGLFYSS--SSTIELKAFADSDWATCPDTRRSISG 1050
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A371HKB6_MUCPR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371HKB6_MUCPR) HSP 1 Score: 57.4 bits (137), Expect = 5.320e-7 Identity = 45/170 (26.47%), Postives = 74/170 (43.53%), Query Frame = 0
Query: 8 LRLKYRVKDLGEASYYMGCHIIHNREKKELKFDQHLYAQTITDHFEINKTA------VKEDE---SQTPE---EKEEMGGIPYHKTVGG------------------------------WKAVVKILQYVRRTQGMGIPFGGDRNGRIEMPAFADSNHATCPDTRRSESG 135
L + +KD+GEAS+ +G HI+ +R + L+ Q Y + + F+ + K D+ +Q P E+ EM IPY VG WKAV +++ Y+RRT+G + + +E+ ++DS+ A C +RS SG
Sbjct: 90 LTKNFEIKDIGEASFVLGIHILRDRSQGILRLSQENYISKVLERFDKKDSKPGDTLIAKRDKFSLNQCPNNDLERNEMQKIPYASVVGSLMYAQVCTRPDITFVVGVLGRYLSDLEMQHWKAVKRVIHYLRRTKGHMRTYRNSED--LEIIGYSDSDFAGCQLNKRSTSG 257
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A438KDE1_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KDE1_VITVI) HSP 1 Score: 55.1 bits (131), Expect = 4.070e-6 Identity = 41/129 (31.78%), Postives = 66/129 (51.16%), Query Frame = 0
Query: 12 YRVKDLGEASYYMGCHIIHNREKKELKFDQHLYA-QTITDH----FEINKTAVKEDESQTPEEKEEMGGIPYHKTVGGWKAVVKILQYVRRTQGMGIPFGGDRNGRIEMPAFADSNHATCPDTRRSESG 135
+++KDLG Y++G + R K + Q YA Q + D + KT + + + +E + + ++ + G+ +LQYV T G G+ + + IE+ AFADS+ A CPDTRRS SG
Sbjct: 626 FKLKDLGNLKYFLGLEV--GRSSKGISVSQRHYALQLLFDTGYLGCKTRKTPMDPNVKLSHDEGDLLDDPSMYRRMIGYH----VLQYVEATVGQGLFYSS--SSAIELKAFADSDWAACPDTRRSISG 746
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A438IRS6_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IRS6_VITVI) HSP 1 Score: 54.7 bits (130), Expect = 5.350e-6 Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query: 86 KAVVKILQYVRRTQGMGIPFGGDRNGRIEMPAFADSNHATCPDTRRSESG 135
+AV ILQY++RT G G+ F N ++++ AFA+S+ A+CPDTRRS SG
Sbjct: 514 QAVFHILQYIKRTLGQGLFFSS--NSKVQLKAFANSDWASCPDTRRSISG 561
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A438IUI2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IUI2_VITVI) HSP 1 Score: 53.1 bits (126), Expect = 1.870e-5 Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 0
Query: 86 KAVVKILQYVRRTQGMGIPFGGDRNGRIEMPAFADSNHATCPDTRR 131
+ V +ILQY++RT G G+ F N ++++ AFADS+ A+CPDTRR
Sbjct: 604 QVVFRILQYIKRTPGQGLFFSS--NSKVQLKAFADSDWASCPDTRR 647
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Match: A0A438DZC0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DZC0_VITVI) HSP 1 Score: 53.1 bits (126), Expect = 1.940e-5 Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 0
Query: 86 KAVVKILQYVRRTQGMGIPFGGDRNGRIEMPAFADSNHATCPDTRR 131
+ V +ILQY++RT G G+ F N ++++ AFADS+ A+CPDTRR
Sbjct: 928 QVVFRILQYIKRTPGQGLFFSS--NSKVQLKAFADSDWASCPDTRR 971 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig188.4673.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-paniculata_contig188.4673.1 ID=prot_H-paniculata_contig188.4673.1|Name=mRNA_H-paniculata_contig188.4673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bpback to top |