prot_H-paniculata_contig18725.4641.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig18725.4641.1
Unique Nameprot_H-paniculata_contig18725.4641.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length92
Homology
BLAST of mRNA_H-paniculata_contig18725.4641.1 vs. uniprot
Match: D7G5C0_ECTSI (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5C0_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 9.860e-45
Identity = 76/91 (83.52%), Postives = 78/91 (85.71%), Query Frame = 0
Query:    1 MKNGEIYRGHLNDAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLMVLPDVLKNAPVFKPVQKMKSKVEESGGSRGGGFKKSKKPKA 91
            MKNGEIYRGHLN+AEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKL+VLPDVLKNAPVFKPVQKMK             FKKSKKPKA
Sbjct:   23 MKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKKXXXXXXXXXXXXFKKSKKPKA 113          
BLAST of mRNA_H-paniculata_contig18725.4641.1 vs. uniprot
Match: A0A835ZED0_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZED0_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.980e-31
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 0
Query:    1 MKNGEIYRGHLNDAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLMVLPDVLKNAPVFKPVQKM 68
            MKNGEIYRG L +AEDTMN F+T VTMT RDGRVSKLEQVYLRGSHIK ++LPD+LKNAPVFK VQKM
Sbjct:   26 MKNGEIYRGRLMEAEDTMNSFITEVTMTARDGRVSKLEQVYLRGSHIKFIILPDLLKNAPVFKGVQKM 93          
BLAST of mRNA_H-paniculata_contig18725.4641.1 vs. uniprot
Match: A0A6S9H3G1_HETAK (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H3G1_HETAK)

HSP 1 Score: 111 bits (278), Expect = 5.670e-30
Identity = 54/88 (61.36%), Postives = 69/88 (78.41%), Query Frame = 0
Query:    1 MKNGEIYRGHLNDAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLMVLPDVLKNAPVFKPVQKMKSKVEESGGSRGGGFKKSKK 88
            +KNGEIYRG L++AEDTMNC M+ VT T R+G+VSKLE VY+RGSH+KL++LPD+L+NAPVFK VQ ++ K +     RG G  K KK
Sbjct:   25 LKNGEIYRGMLDEAEDTMNCAMSNVTFTARNGKVSKLESVYIRGSHVKLLILPDMLRNAPVFKKVQGLRGKNQTPAAGRGRGSFKRKK 112          
BLAST of mRNA_H-paniculata_contig18725.4641.1 vs. uniprot
Match: A0A7S2S181_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S181_9STRA)

HSP 1 Score: 108 bits (270), Expect = 9.890e-29
Identity = 50/74 (67.57%), Postives = 62/74 (83.78%), Query Frame = 0
Query:    1 MKNGEIYRGHLNDAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLMVLPDVLKNAPVFKPVQKMKSKVEE 74
            ++NGEIYRG L +AEDTMNCF+  VTMT RDGRVSKLEQVY+RGS +KL++LP+VLK++P F  VQ MK K +E
Sbjct:   25 LRNGEIYRGTLKEAEDTMNCFLENVTMTARDGRVSKLEQVYIRGSQVKLIILPEVLKHSPAFNKVQTMKKKNDE 98          
BLAST of mRNA_H-paniculata_contig18725.4641.1 vs. uniprot
Match: K3WSP0_GLOUD (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSP0_GLOUD)

HSP 1 Score: 102 bits (255), Expect = 1.890e-26
Identity = 49/91 (53.85%), Postives = 68/91 (74.73%), Query Frame = 0
Query:    1 MKNGEIYRGHLNDAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLMVLPDVLKNAPVFKPVQKMKS------KVEESGGSRGGGFKK 85
            +KNGEIYRGHL ++ED+MNC ++ V +T RDG+ +KLEQVY+RGSHIKL++LPD+LKN+P+F  VQ +K       K   S  ++ GG +K
Sbjct:   24 LKNGEIYRGHLEESEDSMNCQLSNVVLTQRDGQKAKLEQVYVRGSHIKLIILPDILKNSPLFSKVQALKKPAAEKKKARSSAKTKRGGMRK 114          
BLAST of mRNA_H-paniculata_contig18725.4641.1 vs. uniprot
Match: A0A485LB96_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LB96_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.110e-26
Identity = 46/81 (56.79%), Postives = 66/81 (81.48%), Query Frame = 0
Query:    1 MKNGEIYRGHLNDAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLMVLPDVLKNAPVFKPVQKMKSKVEESGGSRGG 81
            +KNGE+YRGHL ++ED+MNC +  VT+TGRDG++S+LEQVY+RGS +KL +LPD+L+ +P+FK VQ +K   + S  S+GG
Sbjct:   24 LKNGEVYRGHLVESEDSMNCQLKQVTLTGRDGQISRLEQVYVRGSQVKLFILPDMLQKSPLFKKVQALKKPEKASRKSKGG 104          
BLAST of mRNA_H-paniculata_contig18725.4641.1 vs. uniprot
Match: W7TQG3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQG3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.510e-25
Identity = 51/90 (56.67%), Postives = 68/90 (75.56%), Query Frame = 0
Query:    1 MKNGEIYRGHLNDAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLMVLPDVLKNAPVFKPVQKMKSKVEE--SGGSRGGGFKKSKK 88
            +K+GE+YRG L ++EDTMN  ++ VT T R+G+V KLEQVYLRGSH+K +VLP++LK+APVFK VQ MK K     +G  RGG F+  K+
Sbjct:   26 LKSGEVYRGLLMESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLKFIVLPEILKHAPVFKKVQGMKKKESSKTAGRGRGGAFRGKKR 115          
BLAST of mRNA_H-paniculata_contig18725.4641.1 vs. uniprot
Match: T0QL39_SAPDV (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QL39_SAPDV)

HSP 1 Score: 99.0 bits (245), Expect = 6.070e-25
Identity = 42/69 (60.87%), Postives = 60/69 (86.96%), Query Frame = 0
Query:    1 MKNGEIYRGHLNDAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLMVLPDVLKNAPVFKPVQKMK 69
            +KNGEIY+GHL +AED+MNC +  VT+TGRDG++S+LEQVY+RGS +KL +LPD+L+ +P+FK +Q +K
Sbjct:   24 LKNGEIYKGHLMEAEDSMNCQLKDVTLTGRDGQLSRLEQVYIRGSQVKLFILPDMLQKSPLFKKIQALK 92          
BLAST of mRNA_H-paniculata_contig18725.4641.1 vs. uniprot
Match: A0A1V9ZC26_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC26_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 6.070e-25
Identity = 43/69 (62.32%), Postives = 60/69 (86.96%), Query Frame = 0
Query:    1 MKNGEIYRGHLNDAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLMVLPDVLKNAPVFKPVQKMK 69
            +KNGEIY+GHL +AED+MNC +  VT+TGRDG++S+LEQVY+RGS +KL +LPD+L+ +P+FK VQ +K
Sbjct:   24 LKNGEIYKGHLLEAEDSMNCQLKDVTLTGRDGQLSRLEQVYIRGSQVKLFILPDMLQKSPLFKKVQALK 92          
BLAST of mRNA_H-paniculata_contig18725.4641.1 vs. uniprot
Match: A0A5D6XZW3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZW3_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.620e-24
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 0
Query:    1 MKNGEIYRGHLNDAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLMVLPDVLKNAPVFKPVQKMKSKVEE 74
            +KNGEIYRGHL ++ED+MNC M  V +T RDG+  KLEQVY+RGSHIKL++LPDVLKN+P+   VQ +K    E
Sbjct:   25 LKNGEIYRGHLLESEDSMNCQMRDVVLTQRDGQKRKLEQVYVRGSHIKLVILPDVLKNSPLLAKVQALKKPAAE 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18725.4641.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5C0_ECTSI9.860e-4583.52Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
A0A835ZED0_9STRA3.980e-3182.35Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Trib... [more]
A0A6S9H3G1_HETAK5.670e-3061.36Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Hete... [more]
A0A7S2S181_9STRA9.890e-2967.57Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhiz... [more]
K3WSP0_GLOUD1.890e-2653.85Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Glob... [more]
A0A485LB96_9STRA2.110e-2656.79Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Apha... [more]
W7TQG3_9STRA2.510e-2556.67Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Mono... [more]
T0QL39_SAPDV6.070e-2560.87Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Sapr... [more]
A0A1V9ZC26_9STRA6.070e-2562.32Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Thra... [more]
A0A5D6XZW3_9STRA1.620e-2462.16Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Pyth... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 1..52
e-value: 0.0055
score: 23.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 1..51
e-value: 1.3E-10
score: 40.8
NoneNo IPR availableGENE3D2.30.30.100coord: 1..63
e-value: 9.6E-21
score: 75.1
NoneNo IPR availablePANTHERPTHR23338:SF17SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3coord: 1..86
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..86
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 1..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18725contigH-paniculata_contig18725:3154..4570 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18725.4641.1mRNA_H-paniculata_contig18725.4641.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig18725 3145..4633 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig18725.4641.1 ID=prot_H-paniculata_contig18725.4641.1|Name=mRNA_H-paniculata_contig18725.4641.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MKNGEIYRGHLNDAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLM
VLPDVLKNAPVFKPVQKMKSKVEESGGSRGGGFKKSKKPKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR010920LSM_dom_sf