mRNA_H-paniculata_contig18709.4631.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY) HSP 1 Score: 224 bits (571), Expect = 1.420e-63 Identity = 112/234 (47.86%), Postives = 152/234 (64.96%), Query Frame = 1
Query: 22 RTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDEDDF 720
R PLE+VHTDIAGP D S GG R+ + F+DD+SR +Y ++KSEAL L++F+ K + + +RSD+GGEYT K F FC E GI + + YTPQQNGVAER R+I MAR+ + + R +WAEAVR AVY LNR PT+ TP E G+ P + HL++FGC+AY Q R+KLDD+ +F+GYDE S +YR+Y+P K + +SR+V +DE D+
Sbjct: 1306 RARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 1539
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY) HSP 1 Score: 221 bits (562), Expect = 1.970e-62 Identity = 112/237 (47.26%), Postives = 151/237 (63.71%), Query Frame = 1
Query: 13 REERTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDEDDF 720
R R LE+VHTDIAGP D S GG R+ + F+DD+SR +Y ++KSEAL LK+F+ K + + +RSD+GGEYT K F FC E GI + +A YTPQQNGVAER R+I MAR+ + + R +WAEAVR AVY LNR PT+ TP E G+ P + H ++FGC+AY R+KLDD+ +F+GYDE S +YR+Y+P K + +SR+V +DE D+
Sbjct: 382 RSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 618
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464) HSP 1 Score: 215 bits (548), Expect = 8.220e-61 Identity = 105/232 (45.26%), Postives = 153/232 (65.95%), Query Frame = 1
Query: 22 RTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDED 714
R +PLEL+HTDI GP+ S G + ++F+DD+SR VY +QKSEA K+F+ V K + L I +RSD+GGE+T + F++FC + GI++ + +PQQNGVAER R+I MAR+ + + ++ + +WAEAV AVY LNR+PTR KTP E G P + HLRVFG AY + R KLDDK+ A +F+GYD +S Y++Y+P+ ++ +SR+V +DE+
Sbjct: 170 RAQKPLELIHTDICGPIKPSSLGKSNYFLLFIDDFSRKTWVYFLKQKSEAFEVFKKFKAAVEKESGLHIKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFGSKAYAHVPDETRSKLDDKSKAFIFIGYDSNSKGYKLYNPDTNNLVISRDVEFDEE 401
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A540LPY8_MALBA (Integrase catalytic domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540LPY8_MALBA) HSP 1 Score: 202 bits (513), Expect = 8.570e-61 Identity = 99/232 (42.67%), Postives = 149/232 (64.22%), Query Frame = 1
Query: 22 RTTEPLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDED 714
R LE+VH+D+ GP++ S G ++ I F+DD+SR VY ++KSEA A K F+ V +D +I +R+D+GGEY K F FC EKGIK++ + YTPQQNGV+ER ++I M R+ ++ + +++W E V +V+ LNR+PT TP E G+ P +DH +VFGC+AY ++R+KLDDK+ +FLG E S +Y++Y+P K + +SR+V +DED
Sbjct: 17 RAKSVLEMVHSDLYGPINPVSNGNKKYFISFIDDFSRKTWVYFLQEKSEAFEAFKSFKALVENESDKKIKILRTDRGGEYCSKEFDAFCNEKGIKRQLTTAYTPQQNGVSERKNQTILNMVRSLLVKGSIPKKFWPEVVLWSVHILNRSPTFSVKNMTPQEAWSGQKPLVDHFKVFGCIAYAHIPDEKRKKLDDKSEKCIFLGVSEVSKAYKLYNPVTKKIVVSRDVIFDED 248
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A2Z7BCE9_9LAMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BCE9_9LAMI) HSP 1 Score: 211 bits (538), Expect = 1.200e-60 Identity = 100/233 (42.92%), Postives = 153/233 (65.67%), Query Frame = 1
Query: 22 RTTEPLELVHTDIAGPV-DKSFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDEDD 717
R TEPLELVH D+ GP+ ++ GG ++ ++FVDDYSRM VY + KSEA +F+ V K + +R+D+GGE+T F +C + GI ++ +A YTP+QNGVAER R+I +MAR+ + + + +WAEAV +AVY +N +PT+ KTPYE G+ P ++HL++FGC+ YV+ +R KL++K+ +F+GY S +YR+Y+P V +SRN ++E+D
Sbjct: 344 RATEPLELVHADLCGPMRTETLGGSKYFLLFVDDYSRMSWVYFLKFKSEAFGQFFKFKALVEKQKGSNLKILRTDRGGEFTSMEFNQYCEKHGIHKELTAPYTPEQNGVAERKNRTIVEMARSMLKSKGLPYNFWAEAVTTAVYLINLSPTKAVMNKTPYEAWSGKRPSVEHLKIFGCIVYVLINANERHKLEEKSIKCIFIGYCSQSKAYRVYNPATGKVIVSRNTVFNEED 576
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A5A7UNW6_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UNW6_CUCME) HSP 1 Score: 213 bits (542), Expect = 2.040e-60 Identity = 106/232 (45.69%), Postives = 145/232 (62.50%), Query Frame = 1
Query: 22 RTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDED 714
R PLELVHTD+ GP+ SFG + ++F+DD+SR VY ++KSE K+F+ V K + I +RSD+GGE+T F+ FC E GI++ + +TPQQNGV ER R+I MAR+ + M + +WA+AV AVY NR+PTR KTP + G P + HLRVFGCMAY Q+R KLDDK+ VF+GYD S Y++Y+P K +SR+V +DE+
Sbjct: 409 RARRPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEKESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEE 640
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A2G2VUS6_CAPBA (Integrase catalytic domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VUS6_CAPBA) HSP 1 Score: 215 bits (547), Expect = 2.280e-60 Identity = 109/234 (46.58%), Postives = 149/234 (63.68%), Query Frame = 1
Query: 22 RTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDEDDF 720
R +PLE+VH+D+AGP D S GG R+ + F+DD+SR VY ++KSE L K+F+ V K + + +RSD+GGEYT F F E GI + + YTPQQNGVAER R+I +AR+ + + R +WAEAVR AVY LNR PT+ TP E G+ P + HL++FGC+AY Q R+KLDD+ +F+GYDE S +YR Y+P K V +SR+V +DE D+
Sbjct: 838 RARKPLEIVHSDLAGPFDIPSLGGNRYYLTFIDDFSRRSWVYILKEKSETLDKFKEFKAMVEKQSGYYVKILRSDRGGEYTANLFEDFVKEHGIIHQLTVRYTPQQNGVAERKNRTILDLARSMVKGKHLPRNFWAEAVRCAVYLLNRCPTKSVRYMTPNEAWSGQKPGVGHLKIFGCIAYSHVPEQLRKKLDDRGEKCIFIGYDERSKAYRFYNPLTKKVIISRDVEFDEADY 1071
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: UPI001B3556EB (LOW QUALITY PROTEIN: uncharacterized protein LOC100794549 n=1 Tax=Glycine max TaxID=3847 RepID=UPI001B3556EB) HSP 1 Score: 215 bits (547), Expect = 2.320e-60 Identity = 104/233 (44.64%), Postives = 152/233 (65.24%), Query Frame = 1
Query: 22 RTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDEDD 717
R T+PLEL+HTD+ GP+ SFG ++ ++F+DDYSR VY ++KSE K+F+ V K + L I +RSD+GGE+T F +C + GI++ + +PQQNGVAER R+I M R+ + + M + +WAEAV AVY NR+PTR +EKTP E G P + HL+VFG +AY ++R KLDDK+ VF+GYD S Y++Y+P ++ + +SR+V +DE+D
Sbjct: 1001 RATKPLELIHTDVCGPIKPNSFGKNKYFLLFIDDYSRKTWVYFLKEKSEVFENFKKFKALVEKESGLSIKAMRSDRGGEFTSNKFNKYCEDHGIRRPLTMPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLTNRSPTRSVHEKTPQEAWSGRKPGISHLKVFGSIAYTHVPDEKRTKLDDKSEKYVFVGYDSRSKGYKLYNPNSRKIVISRDVEFDEED 1233
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A6N2K750_SALVM (Integrase catalytic domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2K750_SALVM) HSP 1 Score: 213 bits (541), Expect = 5.020e-60 Identity = 106/234 (45.30%), Postives = 149/234 (63.68%), Query Frame = 1
Query: 22 RTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDEDDF 720
R++ PL+LVHTD+ GP+ +S GG R+ I F+DDYSR+ VY R KS AL K+++ V + ++ +RSD+GGEYT F FCAE GI+++ + Y+PQQNGVAER R+I +MAR+ M + +WAEAV +AVY NR T KTP+E G P + HL++FGC+ Y+ R+KLD KA G+F+GY YR+Y ++K + LSR+V +DED F
Sbjct: 40 RSSYPLQLVHTDLCGPMQHESNGGNRYFITFIDDYSRVCWVYFLRNKSNALTVFKKYKALVELQSGFKVKKMRSDRGGEYTSSEFERFCAEMGIERQMTVAYSPQQNGVAERKNRTIVEMARSMMTEKCLPLNFWAEAVNTAVYLQNRCCTNSLTNKTPFEAFTGRKPGIKHLKLFGCICYIHIPAHLRQKLDGKAEKGIFVGYGNCEKGYRVYVIQSKKIVLSRSVVFDEDKF 273
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA) HSP 1 Score: 213 bits (542), Expect = 1.020e-59 Identity = 99/231 (42.86%), Postives = 147/231 (63.64%), Query Frame = 1
Query: 22 RTTEPLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDE 711
R TE L+LVHTD+ GP+ S G ++ ++F+DDY+RM V+ ++KS+ +F+ V L++ +RSD G EYT F+ FC + GI+ + + YTPQQNGV+ER R++ +MAR + + + +WAEAV ++VY LN PT+ TP+E HG TP ++HL+VFGC+ Y + +R KLD K+ G+FLGY S YRIY+P K + +SRNV++DE
Sbjct: 450 RATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDE 680 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18709.4631.1 >prot_H-paniculata_contig18709.4631.1 ID=prot_H-paniculata_contig18709.4631.1|Name=mRNA_H-paniculata_contig18709.4631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp MRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHback to top mRNA from alignment at H-paniculata_contig18709:4256..4975+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18709.4631.1 ID=mRNA_H-paniculata_contig18709.4631.1|Name=mRNA_H-paniculata_contig18709.4631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=720bp|location=Sequence derived from alignment at H-paniculata_contig18709:4256..4975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18709:4256..4975+ >mRNA_H-paniculata_contig18709.4631.1 ID=mRNA_H-paniculata_contig18709.4631.1|Name=mRNA_H-paniculata_contig18709.4631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig18709:4256..4975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |