mRNA_H-paniculata_contig18709.4631.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18709.4631.1
Unique NamemRNA_H-paniculata_contig18709.4631.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 224 bits (571), Expect = 1.420e-63
Identity = 112/234 (47.86%), Postives = 152/234 (64.96%), Query Frame = 1
Query:   22 RTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDEDDF 720
            R   PLE+VHTDIAGP D  S GG R+ + F+DD+SR   +Y  ++KSEAL  L++F+    K +   +  +RSD+GGEYT K F  FC E GI  + +  YTPQQNGVAER  R+I  MAR+ +    + R +WAEAVR AVY LNR PT+     TP E   G+ P + HL++FGC+AY     Q R+KLDD+    +F+GYDE S +YR+Y+P  K + +SR+V +DE D+
Sbjct: 1306 RARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 1539          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 221 bits (562), Expect = 1.970e-62
Identity = 112/237 (47.26%), Postives = 151/237 (63.71%), Query Frame = 1
Query:   13 REERTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDEDDF 720
            R  R    LE+VHTDIAGP D  S GG R+ + F+DD+SR   +Y  ++KSEAL  LK+F+    K +   +  +RSD+GGEYT K F  FC E GI  + +A YTPQQNGVAER  R+I  MAR+ +    + R +WAEAVR AVY LNR PT+     TP E   G+ P + H ++FGC+AY       R+KLDD+    +F+GYDE S +YR+Y+P  K + +SR+V +DE D+
Sbjct:  382 RSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 618          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464)

HSP 1 Score: 215 bits (548), Expect = 8.220e-61
Identity = 105/232 (45.26%), Postives = 153/232 (65.95%), Query Frame = 1
Query:   22 RTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDED 714
            R  +PLEL+HTDI GP+   S G   + ++F+DD+SR   VY  +QKSEA    K+F+  V K + L I  +RSD+GGE+T + F++FC + GI++  +   +PQQNGVAER  R+I  MAR+ + + ++ + +WAEAV  AVY LNR+PTR    KTP E   G  P + HLRVFG  AY     + R KLDDK+ A +F+GYD +S  Y++Y+P+  ++ +SR+V +DE+
Sbjct:  170 RAQKPLELIHTDICGPIKPSSLGKSNYFLLFIDDFSRKTWVYFLKQKSEAFEVFKKFKAAVEKESGLHIKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFGSKAYAHVPDETRSKLDDKSKAFIFIGYDSNSKGYKLYNPDTNNLVISRDVEFDEE 401          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A540LPY8_MALBA (Integrase catalytic domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540LPY8_MALBA)

HSP 1 Score: 202 bits (513), Expect = 8.570e-61
Identity = 99/232 (42.67%), Postives = 149/232 (64.22%), Query Frame = 1
Query:   22 RTTEPLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDED 714
            R    LE+VH+D+ GP++  S G  ++ I F+DD+SR   VY  ++KSEA  A K F+  V   +D +I  +R+D+GGEY  K F  FC EKGIK++ +  YTPQQNGV+ER  ++I  M R+ ++   + +++W E V  +V+ LNR+PT      TP E   G+ P +DH +VFGC+AY     ++R+KLDDK+   +FLG  E S +Y++Y+P  K + +SR+V +DED
Sbjct:   17 RAKSVLEMVHSDLYGPINPVSNGNKKYFISFIDDFSRKTWVYFLQEKSEAFEAFKSFKALVENESDKKIKILRTDRGGEYCSKEFDAFCNEKGIKRQLTTAYTPQQNGVSERKNQTILNMVRSLLVKGSIPKKFWPEVVLWSVHILNRSPTFSVKNMTPQEAWSGQKPLVDHFKVFGCIAYAHIPDEKRKKLDDKSEKCIFLGVSEVSKAYKLYNPVTKKIVVSRDVIFDED 248          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A2Z7BCE9_9LAMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BCE9_9LAMI)

HSP 1 Score: 211 bits (538), Expect = 1.200e-60
Identity = 100/233 (42.92%), Postives = 153/233 (65.67%), Query Frame = 1
Query:   22 RTTEPLELVHTDIAGPV-DKSFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDEDD 717
            R TEPLELVH D+ GP+  ++ GG ++ ++FVDDYSRM  VY  + KSEA     +F+  V K     +  +R+D+GGE+T   F  +C + GI ++ +A YTP+QNGVAER  R+I +MAR+ + +  +   +WAEAV +AVY +N +PT+    KTPYE   G+ P ++HL++FGC+ YV+    +R KL++K+   +F+GY   S +YR+Y+P    V +SRN  ++E+D
Sbjct:  344 RATEPLELVHADLCGPMRTETLGGSKYFLLFVDDYSRMSWVYFLKFKSEAFGQFFKFKALVEKQKGSNLKILRTDRGGEFTSMEFNQYCEKHGIHKELTAPYTPEQNGVAERKNRTIVEMARSMLKSKGLPYNFWAEAVTTAVYLINLSPTKAVMNKTPYEAWSGKRPSVEHLKIFGCIVYVLINANERHKLEEKSIKCIFIGYCSQSKAYRVYNPATGKVIVSRNTVFNEED 576          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A5A7UNW6_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UNW6_CUCME)

HSP 1 Score: 213 bits (542), Expect = 2.040e-60
Identity = 106/232 (45.69%), Postives = 145/232 (62.50%), Query Frame = 1
Query:   22 RTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDED 714
            R   PLELVHTD+ GP+   SFG   + ++F+DD+SR   VY  ++KSE     K+F+  V K +   I  +RSD+GGE+T   F+ FC E GI++  +  +TPQQNGV ER  R+I  MAR+ +    M + +WA+AV  AVY  NR+PTR    KTP +   G  P + HLRVFGCMAY     Q+R KLDDK+   VF+GYD  S  Y++Y+P  K   +SR+V +DE+
Sbjct:  409 RARRPLELVHTDLCGPIKPSSFGKNNYFLLFIDDFSRKTWVYFVKEKSEVFGMFKRFKALVEKESGYYIKALRSDRGGEFTSNEFKTFCVENGIRRTMTVPFTPQQNGVVERKNRTILNMARSMLKCKKMPKEFWAQAVECAVYLSNRSPTRSLWNKTPQQAWTGRKPSIGHLRVFGCMAYAHIPDQKRSKLDDKSEKYVFVGYDASSKGYKLYNPVTKKTIVSRDVVFDEE 640          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A2G2VUS6_CAPBA (Integrase catalytic domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VUS6_CAPBA)

HSP 1 Score: 215 bits (547), Expect = 2.280e-60
Identity = 109/234 (46.58%), Postives = 149/234 (63.68%), Query Frame = 1
Query:   22 RTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDEDDF 720
            R  +PLE+VH+D+AGP D  S GG R+ + F+DD+SR   VY  ++KSE L   K+F+  V K +   +  +RSD+GGEYT   F  F  E GI  + +  YTPQQNGVAER  R+I  +AR+ +    + R +WAEAVR AVY LNR PT+     TP E   G+ P + HL++FGC+AY     Q R+KLDD+    +F+GYDE S +YR Y+P  K V +SR+V +DE D+
Sbjct:  838 RARKPLEIVHSDLAGPFDIPSLGGNRYYLTFIDDFSRRSWVYILKEKSETLDKFKEFKAMVEKQSGYYVKILRSDRGGEYTANLFEDFVKEHGIIHQLTVRYTPQQNGVAERKNRTILDLARSMVKGKHLPRNFWAEAVRCAVYLLNRCPTKSVRYMTPNEAWSGQKPGVGHLKIFGCIAYSHVPEQLRKKLDDRGEKCIFIGYDERSKAYRFYNPLTKKVIISRDVEFDEADY 1071          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: UPI001B3556EB (LOW QUALITY PROTEIN: uncharacterized protein LOC100794549 n=1 Tax=Glycine max TaxID=3847 RepID=UPI001B3556EB)

HSP 1 Score: 215 bits (547), Expect = 2.320e-60
Identity = 104/233 (44.64%), Postives = 152/233 (65.24%), Query Frame = 1
Query:   22 RTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDEDD 717
            R T+PLEL+HTD+ GP+   SFG  ++ ++F+DDYSR   VY  ++KSE     K+F+  V K + L I  +RSD+GGE+T   F  +C + GI++  +   +PQQNGVAER  R+I  M R+ + +  M + +WAEAV  AVY  NR+PTR  +EKTP E   G  P + HL+VFG +AY     ++R KLDDK+   VF+GYD  S  Y++Y+P ++ + +SR+V +DE+D
Sbjct: 1001 RATKPLELIHTDVCGPIKPNSFGKNKYFLLFIDDYSRKTWVYFLKEKSEVFENFKKFKALVEKESGLSIKAMRSDRGGEFTSNKFNKYCEDHGIRRPLTMPRSPQQNGVAERKNRTILNMVRSMLKSKKMPKEFWAEAVACAVYLTNRSPTRSVHEKTPQEAWSGRKPGISHLKVFGSIAYTHVPDEKRTKLDDKSEKYVFVGYDSRSKGYKLYNPNSRKIVISRDVEFDEED 1233          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A6N2K750_SALVM (Integrase catalytic domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2K750_SALVM)

HSP 1 Score: 213 bits (541), Expect = 5.020e-60
Identity = 106/234 (45.30%), Postives = 149/234 (63.68%), Query Frame = 1
Query:   22 RTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDEDDF 720
            R++ PL+LVHTD+ GP+  +S GG R+ I F+DDYSR+  VY  R KS AL   K+++  V   +  ++  +RSD+GGEYT   F  FCAE GI+++ +  Y+PQQNGVAER  R+I +MAR+ M    +   +WAEAV +AVY  NR  T     KTP+E   G  P + HL++FGC+ Y+      R+KLD KA  G+F+GY      YR+Y  ++K + LSR+V +DED F
Sbjct:   40 RSSYPLQLVHTDLCGPMQHESNGGNRYFITFIDDYSRVCWVYFLRNKSNALTVFKKYKALVELQSGFKVKKMRSDRGGEYTSSEFERFCAEMGIERQMTVAYSPQQNGVAERKNRTIVEMARSMMTEKCLPLNFWAEAVNTAVYLQNRCCTNSLTNKTPFEAFTGRKPGIKHLKLFGCICYIHIPAHLRQKLDGKAEKGIFVGYGNCEKGYRVYVIQSKKIVLSRSVVFDEDKF 273          
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 213 bits (542), Expect = 1.020e-59
Identity = 99/231 (42.86%), Postives = 147/231 (63.64%), Query Frame = 1
Query:   22 RTTEPLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRHFCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAEAVRSAVYCLNRAPTRPHNEKTPYEK*HGETPKLDHLRVFGCMAYVMFQLQQRRKLDDKAWAGVFLGYDEDSLSYRIYHPENKSVQLSRNVRYDE 711
            R TE L+LVHTD+ GP+   S  G ++ ++F+DDY+RM  V+  ++KS+      +F+  V     L++  +RSD G EYT   F+ FC + GI+ + +  YTPQQNGV+ER  R++ +MAR  +    + + +WAEAV ++VY LN  PT+     TP+E  HG TP ++HL+VFGC+ Y +    +R KLD K+  G+FLGY   S  YRIY+P  K + +SRNV++DE
Sbjct:  450 RATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDE 680          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18709.4631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A2WXP0_HIBSY1.420e-6347.86Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10... [more]
A0A6A2WSU7_HIBSY1.970e-6247.26Integrase catalytic domain-containing protein n=2 ... [more]
UPI001F0044648.220e-6145.26DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A540LPY8_MALBA8.570e-6142.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A2Z7BCE9_9LAMI1.200e-6042.92Retrovirus-related Pol polyprotein from transposon... [more]
A0A5A7UNW6_CUCME2.040e-6045.69Retrovirus-related Pol polyprotein from transposon... [more]
A0A2G2VUS6_CAPBA2.280e-6046.58Integrase catalytic domain-containing protein n=1 ... [more]
UPI001B3556EB2.320e-6044.64LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]
A0A6N2K750_SALVM5.020e-6045.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A151T355_CAJCA1.020e-5942.86Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18709contigH-paniculata_contig18709:4256..4975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score107.1
Seed ortholog evalue6.2e-21
Seed eggNOG ortholog225117.XP_009356290.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37ITA@33090,3GHQJ@35493,4JTP0@91835,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size720
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18709.4631.1prot_H-paniculata_contig18709.4631.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18709 4385..4762 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929441.9232666-UTR-H-paniculata_contig18709:4255..43841622929441.9232666-UTR-H-paniculata_contig18709:4255..4384Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18709 4256..4384 +
1691480862.9348261-UTR-H-paniculata_contig18709:4255..43841691480862.9348261-UTR-H-paniculata_contig18709:4255..4384Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18709 4256..4384 +
1622929441.9878502-UTR-H-paniculata_contig18709:4762..49751622929441.9878502-UTR-H-paniculata_contig18709:4762..4975Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18709 4763..4975 +
1691480862.952947-UTR-H-paniculata_contig18709:4762..49751691480862.952947-UTR-H-paniculata_contig18709:4762..4975Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18709 4763..4975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929441.9691627-CDS-H-paniculata_contig18709:4384..47621622929441.9691627-CDS-H-paniculata_contig18709:4384..4762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18709 4385..4762 +
1691480862.9448147-CDS-H-paniculata_contig18709:4384..47621691480862.9448147-CDS-H-paniculata_contig18709:4384..4762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18709 4385..4762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18709.4631.1

>prot_H-paniculata_contig18709.4631.1 ID=prot_H-paniculata_contig18709.4631.1|Name=mRNA_H-paniculata_contig18709.4631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MRKVYTPRQKSEALWALKQFERDVAKANDLRINHIRSDQGGEYTGKPFRH
FCAEKGIKQKFSAVYTPQQNGVAERSWRSIFKMARASMITADMGRRYWAE
AVRSAVYCLNRAPTRPHNEKTPYEK*
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mRNA from alignment at H-paniculata_contig18709:4256..4975+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18709.4631.1 ID=mRNA_H-paniculata_contig18709.4631.1|Name=mRNA_H-paniculata_contig18709.4631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=720bp|location=Sequence derived from alignment at H-paniculata_contig18709:4256..4975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAAAAAGGTATCGAGAAGAGCGGACGACCGAGCCGTTGGAGCTGGTGCA CACCGACATAGCCGGACCGGTGGACAAGTCCTTCGGAGGATGTCGCTTCG CCATCATCTTCGTCGACGACTACAGCAGAATGCGTAAAGTCTATACCCCG CGACAAAAGTCGGAGGCGCTATGGGCCCTGAAGCAATTCGAGAGAGACGT AGCGAAGGCAAACGATTTGCGGATTAACCACATTCGGTCGGATCAGGGAG GAGAATATACTGGGAAGCCTTTTAGGCACTTCTGCGCGGAAAAAGGCATC AAGCAGAAGTTCTCTGCCGTCTACACACCGCAACAAAACGGTGTGGCGGA GCGCAGCTGGCGCAGCATTTTCAAGATGGCAAGAGCCAGCATGATCACCG CCGACATGGGTCGTCGGTATTGGGCGGAAGCGGTGCGCTCGGCAGTGTAC TGCCTAAATCGCGCCCCGACGCGACCGCACAACGAGAAAACACCGTACGA AAAATGACACGGCGAGACACCAAAGTTGGACCACCTTCGCGTCTTCGGCT GCATGGCGTATGTCATGTTCCAGTTGCAGCAGAGACGCAAGCTCGACGAC AAAGCATGGGCGGGGGTGTTTCTGGGGTACGACGAAGACAGCCTGAGTTA TCGAATATATCACCCGGAAAACAAGAGCGTCCAGTTGAGCAGGAACGTGA GATATGACGAAGACGACTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig18709:4256..4975+

>mRNA_H-paniculata_contig18709.4631.1 ID=mRNA_H-paniculata_contig18709.4631.1|Name=mRNA_H-paniculata_contig18709.4631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig18709:4256..4975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTAAAGTCTATACCCCGCGACAAAAGTCGGAGGCGCTATGGGCCCT
GAAGCAATTCGAGAGAGACGTAGCGAAGGCAAACGATTTGCGGATTAACC
ACATTCGGTCGGATCAGGGAGGAGAATATACTGGGAAGCCTTTTAGGCAC
TTCTGCGCGGAAAAAGGCATCAAGCAGAAGTTCTCTGCCGTCTACACACC
GCAACAAAACGGTGTGGCGGAGCGCAGCTGGCGCAGCATTTTCAAGATGG
CAAGAGCCAGCATGATCACCGCCGACATGGGTCGTCGGTATTGGGCGGAA
GCGGTGCGCTCGGCAGTGTACTGCCTAAATCGCGCCCCGACGCGACCGCA
CAACGAGAAAACACCGTACGAAAAATGAATGCGTAAAGTCTATACCCCGC
GACAAAAGTCGGAGGCGCTATGGGCCCTGAAGCAATTCGAGAGAGACGTA
GCGAAGGCAAACGATTTGCGGATTAACCACATTCGGTCGGATCAGGGAGG
AGAATATACTGGGAAGCCTTTTAGGCACTTCTGCGCGGAAAAAGGCATCA
AGCAGAAGTTCTCTGCCGTCTACACACCGCAACAAAACGGTGTGGCGGAG
CGCAGCTGGCGCAGCATTTTCAAGATGGCAAGAGCCAGCATGATCACCGC
CGACATGGGTCGTCGGTATTGGGCGGAAGCGGTGCGCTCGGCAGTGTACT
GCCTAAATCGCGCCCCGACGCGACCGCACAACGAGAAAACACCGTACGAA
AAATGA
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