prot_H-paniculata_contig18698.4626.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig18698.4626.1
Unique Nameprot_H-paniculata_contig18698.4626.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length59
Homology
BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: A0A836CH46_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH46_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.840e-26
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 0
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 59
            QV ISGFRSFRSQ E EPFSP+HNVIVGRNGSGKSNFFDAIQFVLLNQ+F +LRQEERQ
Sbjct:    5 QVIISGFRSFRSQAETEPFSPRHNVIVGRNGSGKSNFFDAIQFVLLNQKFQNLRQEERQ 63          
BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: A0A6H5KK26_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK26_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.900e-26
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 0
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 59
            QV +SGFRSFRSQ E E FSP+HNVIVGRNGSGKSNFFDAIQF LLNQRFS+LRQEERQ
Sbjct:    5 QVSMSGFRSFRSQPEIESFSPRHNVIVGRNGSGKSNFFDAIQFALLNQRFSNLRQEERQ 63          
BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: D8LEU4_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU4_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 6.320e-25
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 0
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 59
            QV +SGFRSFRSQ E E FSP+HNVIVGRNGSGKSNFFDAIQF LLNQRFS+LRQEERQ
Sbjct:    5 QVSMSGFRSFRSQPEIESFSPRHNVIVGRNGSGKSNFFDAIQFALLNQRFSNLRQEERQ 63          
BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: A0A7R9U6Y3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6Y3_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.600e-24
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 0
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 59
            Q+ ISGFRSFR+Q E EPFSP HNVIVGRNGSGKSNFFDAIQFVLL  RF+SLRQEERQ
Sbjct:    5 QIIISGFRSFRTQDEIEPFSPSHNVIVGRNGSGKSNFFDAIQFVLLAPRFASLRQEERQ 63          
BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: A0A7S2F438_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F438_9STRA)

HSP 1 Score: 101 bits (252), Expect = 9.360e-24
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 0
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 59
            Q+ +SGFRSFRSQ+E EPFS KHNVIVGRNGSGKSNFFDAIQFVL++ RF++LRQEERQ
Sbjct:   25 QLTLSGFRSFRSQSEIEPFSSKHNVIVGRNGSGKSNFFDAIQFVLVSSRFNTLRQEERQ 83          
BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: A0A7S1U8S3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8S3_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.260e-22
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 59
            Q+ +SGFRSFR Q E EPFSP HNV+VGRNGSGKSNFFDAIQFVLL  +F++LRQ+ERQ
Sbjct:    5 QIILSGFRSFRQQEEIEPFSPHHNVVVGRNGSGKSNFFDAIQFVLLAPKFANLRQDERQ 63          
BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: W7T3Q8_9STRA (Structural maintenance of chromosomes protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3Q8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.360e-22
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 0
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 59
            QV +SGFRSFR Q+E EPFS +HNVI+GRNGSGKSNFF AIQFVLL+Q+F  LRQEERQ
Sbjct:    5 QVVLSGFRSFRHQSEIEPFSARHNVIIGRNGSGKSNFFAAIQFVLLSQKFMHLRQEERQ 63          
BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: J9Q438_OSTED (SMC3 structural maintenance of chromosomes (Fragment) n=1 Tax=Ostrea edulis TaxID=37623 RepID=J9Q438_OSTED)

HSP 1 Score: 88.6 bits (218), Expect = 1.240e-21
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 0
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 59
            QV I GFRS+R QT  EPFSPKHNVIVGRNGSGKSNFF AIQFVL ++ FS LR E+RQ
Sbjct:    3 QVIIQGFRSYRDQTVVEPFSPKHNVIVGRNGSGKSNFFYAIQFVLSDE-FSHLRPEQRQ 60          
BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: UPI00077B0A3B (structural maintenance of chromosomes protein 3-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B0A3B)

HSP 1 Score: 94.7 bits (234), Expect = 2.820e-21
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 0
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 59
            QV I GFRS+R QT  EPFSPKHN+IVGRNGSGKSNFF AIQFVL    FS+LRQEERQ
Sbjct:    5 QVIIQGFRSYRDQTIIEPFSPKHNIIVGRNGSGKSNFFFAIQFVLSADEFSNLRQEERQ 63          
BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: UPI001CF51BD7 (structural maintenance of chromosomes protein 3-like isoform X1 n=3 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF51BD7)

HSP 1 Score: 94.7 bits (234), Expect = 2.830e-21
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 0
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 59
            QV I GFRS+R QT  EPFSPKHN+IVGRNGSGKSNFF AIQFVL    FS+LRQEERQ
Sbjct:    5 QVIIQGFRSYRDQTIIEPFSPKHNIIVGRNGSGKSNFFFAIQFVLSADEFSNLRQEERQ 63          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CH46_9STRA3.840e-2688.14Structural maintenance of chromosomes protein n=1 ... [more]
A0A6H5KK26_9PHAE3.900e-2686.44SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LEU4_ECTSI6.320e-2586.44Structural maintenance of chromosomes protein n=1 ... [more]
A0A7R9U6Y3_9STRA1.600e-2484.75Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2F438_9STRA9.360e-2481.36Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
A0A7S1U8S3_9STRA1.260e-2276.27Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
W7T3Q8_9STRA4.360e-2277.97Structural maintenance of chromosomes protein n=2 ... [more]
J9Q438_OSTED1.240e-2176.27SMC3 structural maintenance of chromosomes (Fragme... [more]
UPI00077B0A3B2.820e-2177.97structural maintenance of chromosomes protein 3-li... [more]
UPI001CF51BD72.830e-2177.97structural maintenance of chromosomes protein 3-li... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..59
e-value: 7.0E-19
score: 70.6
NoneNo IPR availablePANTHERPTHR43977FAMILY NOT NAMEDcoord: 1..59
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 2..58
e-value: 9.1E-19
score: 67.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18698contigH-paniculata_contig18698:3872..4048 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18698.4626.1mRNA_H-paniculata_contig18698.4626.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig18698 3872..4048 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig18698.4626.1 ID=prot_H-paniculata_contig18698.4626.1|Name=mRNA_H-paniculata_contig18698.4626.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRF
SSLRQEERQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003395RecF/RecN/SMC_N
IPR027417P-loop_NTPase