mRNA_H-paniculata_contig18698.4626.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18698.4626.1
Unique NamemRNA_H-paniculata_contig18698.4626.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: A0A836CH46_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH46_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.840e-26
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 177
            QV ISGFRSFRSQ E EPFSP+HNVIVGRNGSGKSNFFDAIQFVLLNQ+F +LRQEERQ
Sbjct:    5 QVIISGFRSFRSQAETEPFSPRHNVIVGRNGSGKSNFFDAIQFVLLNQKFQNLRQEERQ 63
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BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: A0A6H5KK26_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK26_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.900e-26
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 177
            QV +SGFRSFRSQ E E FSP+HNVIVGRNGSGKSNFFDAIQF LLNQRFS+LRQEERQ
Sbjct:    5 QVSMSGFRSFRSQPEIESFSPRHNVIVGRNGSGKSNFFDAIQFALLNQRFSNLRQEERQ 63
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BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: D8LEU4_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU4_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 6.320e-25
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 177
            QV +SGFRSFRSQ E E FSP+HNVIVGRNGSGKSNFFDAIQF LLNQRFS+LRQEERQ
Sbjct:    5 QVSMSGFRSFRSQPEIESFSPRHNVIVGRNGSGKSNFFDAIQFALLNQRFSNLRQEERQ 63
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BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: A0A7R9U6Y3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6Y3_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.600e-24
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 177
            Q+ ISGFRSFR+Q E EPFSP HNVIVGRNGSGKSNFFDAIQFVLL  RF+SLRQEERQ
Sbjct:    5 QIIISGFRSFRTQDEIEPFSPSHNVIVGRNGSGKSNFFDAIQFVLLAPRFASLRQEERQ 63
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BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: A0A7S2F438_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F438_9STRA)

HSP 1 Score: 101 bits (252), Expect = 9.360e-24
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 177
            Q+ +SGFRSFRSQ+E EPFS KHNVIVGRNGSGKSNFFDAIQFVL++ RF++LRQEERQ
Sbjct:   25 QLTLSGFRSFRSQSEIEPFSSKHNVIVGRNGSGKSNFFDAIQFVLVSSRFNTLRQEERQ 83
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BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: A0A7S1U8S3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8S3_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.260e-22
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 177
            Q+ +SGFRSFR Q E EPFSP HNV+VGRNGSGKSNFFDAIQFVLL  +F++LRQ+ERQ
Sbjct:    5 QIILSGFRSFRQQEEIEPFSPHHNVVVGRNGSGKSNFFDAIQFVLLAPKFANLRQDERQ 63
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BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: W7T3Q8_9STRA (Structural maintenance of chromosomes protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3Q8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.360e-22
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 177
            QV +SGFRSFR Q+E EPFS +HNVI+GRNGSGKSNFF AIQFVLL+Q+F  LRQEERQ
Sbjct:    5 QVVLSGFRSFRHQSEIEPFSARHNVIIGRNGSGKSNFFAAIQFVLLSQKFMHLRQEERQ 63
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BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: J9Q438_OSTED (SMC3 structural maintenance of chromosomes (Fragment) n=1 Tax=Ostrea edulis TaxID=37623 RepID=J9Q438_OSTED)

HSP 1 Score: 88.6 bits (218), Expect = 1.240e-21
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 177
            QV I GFRS+R QT  EPFSPKHNVIVGRNGSGKSNFF AIQFVL ++ FS LR E+RQ
Sbjct:    3 QVIIQGFRSYRDQTVVEPFSPKHNVIVGRNGSGKSNFFYAIQFVLSDE-FSHLRPEQRQ 60
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BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: UPI00077B0A3B (structural maintenance of chromosomes protein 3-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B0A3B)

HSP 1 Score: 94.7 bits (234), Expect = 2.820e-21
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 177
            QV I GFRS+R QT  EPFSPKHN+IVGRNGSGKSNFF AIQFVL    FS+LRQEERQ
Sbjct:    5 QVIIQGFRSYRDQTIIEPFSPKHNIIVGRNGSGKSNFFFAIQFVLSADEFSNLRQEERQ 63
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BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Match: UPI001CF51BD7 (structural maintenance of chromosomes protein 3-like isoform X1 n=3 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF51BD7)

HSP 1 Score: 94.7 bits (234), Expect = 2.830e-21
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRFSSLRQEERQ 177
            QV I GFRS+R QT  EPFSPKHN+IVGRNGSGKSNFF AIQFVL    FS+LRQEERQ
Sbjct:    5 QVIIQGFRSYRDQTIIEPFSPKHNIIVGRNGSGKSNFFFAIQFVLSADEFSNLRQEERQ 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18698.4626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CH46_9STRA3.840e-2688.14Structural maintenance of chromosomes protein n=1 ... [more]
A0A6H5KK26_9PHAE3.900e-2686.44SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LEU4_ECTSI6.320e-2586.44Structural maintenance of chromosomes protein n=1 ... [more]
A0A7R9U6Y3_9STRA1.600e-2484.75Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2F438_9STRA9.360e-2481.36Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
A0A7S1U8S3_9STRA1.260e-2276.27Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
W7T3Q8_9STRA4.360e-2277.97Structural maintenance of chromosomes protein n=2 ... [more]
J9Q438_OSTED1.240e-2176.27SMC3 structural maintenance of chromosomes (Fragme... [more]
UPI00077B0A3B2.820e-2177.97structural maintenance of chromosomes protein 3-li... [more]
UPI001CF51BD72.830e-2177.97structural maintenance of chromosomes protein 3-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18698contigH-paniculata_contig18698:3872..4048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog2880.D8LEU4
Preferred nameSMC3
KEGG koko:K06669
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000775,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000795,GO:0000798,GO:0000800,GO:0000819,GO:0000922,GO:0001736,GO:0001737,GO:0001738,GO:0002009,GO:0002165,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003774,GO:0003777,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005604,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005911,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007088,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007135,GO:0007164,GO:0007275,GO:0007346,GO:0007399,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008092,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008278,GO:0008544,GO:0009506,GO:0009507,GO:0009536,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009913,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010948,GO:0015630,GO:0015631,GO:0016043,GO:0016301,GO:0016310,GO:0016363,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022008,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030030,GO:0030054,GO:0030154,GO:0030182,GO:0030435,GO:0030437,GO:0030855,GO:0030892,GO:0030893,GO:0031012,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032505,GO:0032875,GO:0032876,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034085,GO:0034086,GO:0034087,GO:0034088,GO:0034293,GO:0034399,GO:0034502,GO:0034613,GO:0034641,GO:0034990,GO:0034991,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035315,GO:0035316,GO:0035317,GO:0035821,GO:0035825,GO:0036033,GO:0036211,GO:0040012,GO:0040017,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043412,GO:0043900,GO:0043902,GO:0043903,GO:0043934,GO:0043935,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044403,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044788,GO:0044789,GO:0044791,GO:0044794,GO:0044877,GO:0045132,GO:0045143,GO:0045144,GO:0045786,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048468,GO:0048487,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048524,GO:0048563,GO:0048569,GO:0048646,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051171,GO:0051172,GO:0051177,GO:0051179,GO:0051276,GO:0051321,GO:0051493,GO:0051641,GO:0051702,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051817,GO:0051851,GO:0055044,GO:0060147,GO:0060236,GO:0060255,GO:0060429,GO:0060562,GO:0060966,GO:0060968,GO:0061775,GO:0061780,GO:0061982,GO:0061983,GO:0062022,GO:0062023,GO:0065007,GO:0065009,GO:0070013,GO:0070192,GO:0070193,GO:0070507,GO:0070601,GO:0070727,GO:0070840,GO:0071168,GO:0071704,GO:0071840,GO:0071921,GO:0071960,GO:0071962,GO:0072686,GO:0080090,GO:0090169,GO:0090224,GO:0090304,GO:0090329,GO:0097159,GO:0097431,GO:0098687,GO:0098727,GO:0098813,GO:0099086,GO:0120036,GO:0140013,GO:0140014,GO:0140096,GO:1900368,GO:1901360,GO:1901363,GO:1901564,GO:1901673,GO:1902115,GO:1902186,GO:1902188,GO:1903046,GO:1903047,GO:1903900,GO:1903902,GO:1990414,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.maintenance of mitotic sister chromatid cohesion, centromeric
EggNOG OGsCOG1196@1,KOG0964@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00535,ko03036
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929441.2471058-CDS-H-paniculata_contig18698:3871..40481622929441.2471058-CDS-H-paniculata_contig18698:3871..4048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18698 3872..4048 -
1691480862.6753595-CDS-H-paniculata_contig18698:3871..40481691480862.6753595-CDS-H-paniculata_contig18698:3871..4048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18698 3872..4048 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18698.4626.1prot_H-paniculata_contig18698.4626.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18698 3872..4048 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18698.4626.1

>prot_H-paniculata_contig18698.4626.1 ID=prot_H-paniculata_contig18698.4626.1|Name=mRNA_H-paniculata_contig18698.4626.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
QVFISGFRSFRSQTEFEPFSPKHNVIVGRNGSGKSNFFDAIQFVLLNQRF
SSLRQEERQ
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mRNA from alignment at H-paniculata_contig18698:3872..4048-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18698.4626.1 ID=mRNA_H-paniculata_contig18698.4626.1|Name=mRNA_H-paniculata_contig18698.4626.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig18698:3872..4048- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGTTCATATCCGGATTCAGGAGCTTTAGGTCCCAGACAGAGTTTGA
GCCCTTCAGCCCCAAGCATAATGTTATCGTCGGACGGAATGGGTCAGGGA
AATCGAATTTCTTCGACGCCATCCAGTTCGTGTTGCTGAACCAGCGCTTC
TCCAGCCTGCGACAAGAGGAACGACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig18698:3872..4048-

>mRNA_H-paniculata_contig18698.4626.1 ID=mRNA_H-paniculata_contig18698.4626.1|Name=mRNA_H-paniculata_contig18698.4626.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig18698:3872..4048- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGTTCATATCCGGATTCAGGAGCTTTAGGTCCCAGACAGAGTTTGA
GCCCTTCAGCCCCAAGCATAATGTTATCGTCGGACGGAATGGGTCAGGGA
AATCGAATTTCTTCGACGCCATCCAGTTCGTGTTGCTGAACCAGCGCTTC
TCCAGCCTGCGACAAGAGGAACGACAGCAGGTGTTCATATCCGGATTCAG
GAGCTTTAGGTCCCAGACAGAGTTTGAGCCCTTCAGCCCCAAGCATAATG
TTATCGTCGGACGGAATGGGTCAGGGAAATCGAATTTCTTCGACGCCATC
CAGTTCGTGTTGCTGAACCAGCGCTTCTCCAGCCTGCGACAAGAGGAACG
ACAG
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