prot_H-paniculata_contig18692.4624.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig18692.4624.1
Unique Nameprot_H-paniculata_contig18692.4624.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length129
Homology
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A6H5L064_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L064_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 4.160e-46
Identity = 82/127 (64.57%), Postives = 87/127 (68.50%), Query Frame = 0
Query:    3 RFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 129
            RF VDFYHA+R+A EKARVHREWSAGR+HLICAT+AFGM                                     GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGL SKCIVFFAYRDK+RLE
Sbjct:  268 RFRVDFYHADRTAAEKARVHREWSAGRIHLICATIAFGM-------------------------------------GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLE 357          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: D7FR28_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR28_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.690e-43
Identity = 82/127 (64.57%), Postives = 87/127 (68.50%), Query Frame = 0
Query:    3 RFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 129
            RF VDFYHA+R+A EKARVHREWSAGR+HLICAT+AFGM                                     GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGL SKCIVFFAYRDK+RLE
Sbjct:  848 RFRVDFYHADRTAAEKARVHREWSAGRIHLICATIAFGM-------------------------------------GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLE 937          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: K0SNN9_THAOC (DNA helicase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SNN9_THAOC)

HSP 1 Score: 135 bits (339), Expect = 3.320e-34
Identity = 63/124 (50.81%), Postives = 89/124 (71.77%), Query Frame = 0
Query:    6 VDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 129
            V FYHA+    EKAR H EWS+GR+ ++CAT+AFGMG         S+ +L+  +S T P   ++SL  H+   ++KPDVR+V+H+SMPK++TH+YQESGRAGRDG  + CI+F++Y+DK  LE
Sbjct:  725 VSFYHADVDPAEKARRHNEWSSGRIAVLCATIAFGMGS-------KSSALLFCAFSATCPSDPLLSLFRHS---VDKPDVRFVMHYSMPKSITHYYQESGRAGRDGNNADCILFYSYKDKKTLE 838          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A425DFL9_9STRA (DNA helicase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DFL9_9STRA)

HSP 1 Score: 115 bits (288), Expect = 4.200e-28
Identity = 58/126 (46.03%), Postives = 77/126 (61.11%), Query Frame = 0
Query:    2 SRFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSR 127
            S+  V FYH+E  A+EK+  H+ WS+GR+ LI AT+AFGM                                     GINKPDVRYVIHHS+P+++THFYQESGRAGRDGL ++C+V+++Y+D SR
Sbjct:  199 SQHWVAFYHSELDADEKSYRHQAWSSGRIKLIVATMAFGM-------------------------------------GINKPDVRYVIHHSLPQSITHFYQESGRAGRDGLHAECVVYYSYKDYSR 287          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A1E7EUD2_9STRA (DNA helicase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUD2_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.810e-27
Identity = 56/124 (45.16%), Postives = 76/124 (61.29%), Query Frame = 0
Query:    6 VDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 129
            V +YHAE   +E+ R H++WS+GR++++CATVAFGM                                     GI+KPDVRYVIH+SMPK++TH+YQESGRAGRDG  + CI+F++Y+DK  LE
Sbjct:  727 VSYYHAELDPQERERRHKQWSSGRINVLCATVAFGM-------------------------------------GIDKPDVRYVIHYSMPKSITHYYQESGRAGRDGDNADCILFYSYKDKQVLE 813          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A6A5A8L4_9STRA (ATP-dependent DNA helicase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A8L4_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.000e-27
Identity = 58/126 (46.03%), Postives = 77/126 (61.11%), Query Frame = 0
Query:    2 SRFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSR 127
            S+  V FYH+E  A+EK+  H+ WS+GR+ LI AT+AFGM                                     GINKPDVRYVIHHS+P+++THFYQESGRAGRDGL ++C+V+++Y+D SR
Sbjct:  317 SQHWVAFYHSELDADEKSYRHQAWSSGRIKLIVATMAFGM-------------------------------------GINKPDVRYVIHHSLPQSITHFYQESGRAGRDGLHAECVVYYSYKDYSR 405          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A7S4EMT8_9STRA (DNA helicase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EMT8_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.370e-27
Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 0
Query:    6 VDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 129
            V FYHA+   +E+   H++WS GR++++CATVAFGM                                     GI+KPDVRYVIH+SMPK+LTH+YQESGRAGRDG  ++C++F++Y+DK  LE
Sbjct:  777 VSFYHADLDPKEREHRHKQWSVGRINVLCATVAFGM-------------------------------------GIDKPDVRYVIHYSMPKSLTHYYQESGRAGRDGEDAECVLFYSYKDKQVLE 863          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A7S3VCC4_9STRA (ATP-dependent DNA helicase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VCC4_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.730e-27
Identity = 54/124 (43.55%), Postives = 74/124 (59.68%), Query Frame = 0
Query:    6 VDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 129
            V +YHA+    E+ + H EW +GR++L+CAT+AFGM                                     G++KPDVRYV+H+SMPK++TH+YQESGRAGRDG P+ CI+F+AY+DK  LE
Sbjct:   94 VSYYHADLEIHERQKRHHEWLSGRINLLCATIAFGM-------------------------------------GVDKPDVRYVMHYSMPKSITHYYQESGRAGRDGDPADCILFYAYKDKKILE 180          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A397AAD3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AAD3_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.900e-27
Identity = 56/123 (45.53%), Postives = 75/123 (60.98%), Query Frame = 0
Query:    2 SRFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRD 124
            S+  V FYH+E  A+EK+  H+ WS+GR+ LI AT+AFGM                                     GINKPDVRYVIHHS+P+++THFYQESGRAGRDGL ++C+V+++Y+D
Sbjct:  303 SQHWVAFYHSELDADEKSYRHQAWSSGRIKLIVATMAFGM-------------------------------------GINKPDVRYVIHHSLPQSITHFYQESGRAGRDGLHAECVVYYSYKD 388          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A7S0KZB9_9STRA (DNA helicase (Fragment) n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KZB9_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.140e-26
Identity = 53/120 (44.17%), Postives = 69/120 (57.50%), Query Frame = 0
Query:    6 VDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDK 125
            V +YHAE   +E+   H  WS GR+ ++CAT+AFGM                                     GI+KPDVRYVIH+SMPK++TH+YQESGRAGRDG  + CI+F+AY+DK
Sbjct:  191 VSYYHAELDQQERFNRHHAWSNGRISVLCATIAFGM-------------------------------------GIDKPDVRYVIHYSMPKSITHYYQESGRAGRDGAKADCILFYAYKDK 273          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L064_9PHAE4.160e-4664.57DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FR28_ECTSI1.690e-4364.57DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
K0SNN9_THAOC3.320e-3450.81DNA helicase n=1 Tax=Thalassiosira oceanica TaxID=... [more]
A0A425DFL9_9STRA4.200e-2846.03DNA helicase (Fragment) n=1 Tax=Aphanomyces astaci... [more]
A0A1E7EUD2_9STRA1.810e-2745.16DNA helicase n=1 Tax=Fragilariopsis cylindrus CCMP... [more]
A0A6A5A8L4_9STRA2.000e-2746.03ATP-dependent DNA helicase n=2 Tax=Aphanomyces ast... [more]
A0A7S4EMT8_9STRA3.370e-2744.35DNA helicase n=1 Tax=Pseudo-nitzschia australis Ta... [more]
A0A7S3VCC4_9STRA3.730e-2743.55ATP-dependent DNA helicase n=1 Tax=Chaetoceros deb... [more]
A0A397AAD3_9STRA6.900e-2745.53Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7S0KZB9_9STRA1.140e-2644.17DNA helicase (Fragment) n=1 Tax=Asterionellopsis g... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 2..111
e-value: 2.7E-4
score: 30.3
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 4..110
e-value: 9.4E-10
score: 38.8
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 1..129
score: 9.523
NoneNo IPR availablePANTHERPTHR13710DNA HELICASE RECQ FAMILY MEMBERcoord: 4..128
NoneNo IPR availablePANTHERPTHR13710:SF105BLOOM SYNDROME PROTEINcoord: 4..128
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 4..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18692contigH-paniculata_contig18692:162..677 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18692.4624.1mRNA_H-paniculata_contig18692.4624.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig18692 162..677 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig18692.4624.1 ID=prot_H-paniculata_contig18692.4624.1|Name=mRNA_H-paniculata_contig18692.4624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
VSRFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSL
SSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHF
YQESGRAGRDGLPSKCIVFFAYRDKSRLE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase