mRNA_H-paniculata_contig18692.4624.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18692.4624.1
Unique NamemRNA_H-paniculata_contig18692.4624.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A6H5L064_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L064_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 4.160e-46
Identity = 82/127 (64.57%), Postives = 87/127 (68.50%), Query Frame = 1
Query:    7 RFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 387
            RF VDFYHA+R+A EKARVHREWSAGR+HLICAT+AFGM                                     GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGL SKCIVFFAYRDK+RLE
Sbjct:  268 RFRVDFYHADRTAAEKARVHREWSAGRIHLICATIAFGM-------------------------------------GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLE 357          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: D7FR28_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR28_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.690e-43
Identity = 82/127 (64.57%), Postives = 87/127 (68.50%), Query Frame = 1
Query:    7 RFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 387
            RF VDFYHA+R+A EKARVHREWSAGR+HLICAT+AFGM                                     GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGL SKCIVFFAYRDK+RLE
Sbjct:  848 RFRVDFYHADRTAAEKARVHREWSAGRIHLICATIAFGM-------------------------------------GINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLE 937          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: K0SNN9_THAOC (DNA helicase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SNN9_THAOC)

HSP 1 Score: 135 bits (339), Expect = 3.320e-34
Identity = 63/124 (50.81%), Postives = 89/124 (71.77%), Query Frame = 1
Query:   16 VDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 387
            V FYHA+    EKAR H EWS+GR+ ++CAT+AFGMG         S+ +L+  +S T P   ++SL  H+   ++KPDVR+V+H+SMPK++TH+YQESGRAGRDG  + CI+F++Y+DK  LE
Sbjct:  725 VSFYHADVDPAEKARRHNEWSSGRIAVLCATIAFGMGS-------KSSALLFCAFSATCPSDPLLSLFRHS---VDKPDVRFVMHYSMPKSITHYYQESGRAGRDGNNADCILFYSYKDKKTLE 838          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A425DFL9_9STRA (DNA helicase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DFL9_9STRA)

HSP 1 Score: 115 bits (288), Expect = 4.200e-28
Identity = 58/126 (46.03%), Postives = 77/126 (61.11%), Query Frame = 1
Query:    4 SRFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSR 381
            S+  V FYH+E  A+EK+  H+ WS+GR+ LI AT+AFGM                                     GINKPDVRYVIHHS+P+++THFYQESGRAGRDGL ++C+V+++Y+D SR
Sbjct:  199 SQHWVAFYHSELDADEKSYRHQAWSSGRIKLIVATMAFGM-------------------------------------GINKPDVRYVIHHSLPQSITHFYQESGRAGRDGLHAECVVYYSYKDYSR 287          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A1E7EUD2_9STRA (DNA helicase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUD2_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.810e-27
Identity = 56/124 (45.16%), Postives = 76/124 (61.29%), Query Frame = 1
Query:   16 VDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 387
            V +YHAE   +E+ R H++WS+GR++++CATVAFGM                                     GI+KPDVRYVIH+SMPK++TH+YQESGRAGRDG  + CI+F++Y+DK  LE
Sbjct:  727 VSYYHAELDPQERERRHKQWSSGRINVLCATVAFGM-------------------------------------GIDKPDVRYVIHYSMPKSITHYYQESGRAGRDGDNADCILFYSYKDKQVLE 813          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A6A5A8L4_9STRA (ATP-dependent DNA helicase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A8L4_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.000e-27
Identity = 58/126 (46.03%), Postives = 77/126 (61.11%), Query Frame = 1
Query:    4 SRFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSR 381
            S+  V FYH+E  A+EK+  H+ WS+GR+ LI AT+AFGM                                     GINKPDVRYVIHHS+P+++THFYQESGRAGRDGL ++C+V+++Y+D SR
Sbjct:  317 SQHWVAFYHSELDADEKSYRHQAWSSGRIKLIVATMAFGM-------------------------------------GINKPDVRYVIHHSLPQSITHFYQESGRAGRDGLHAECVVYYSYKDYSR 405          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A7S4EMT8_9STRA (DNA helicase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EMT8_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.370e-27
Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   16 VDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 387
            V FYHA+   +E+   H++WS GR++++CATVAFGM                                     GI+KPDVRYVIH+SMPK+LTH+YQESGRAGRDG  ++C++F++Y+DK  LE
Sbjct:  777 VSFYHADLDPKEREHRHKQWSVGRINVLCATVAFGM-------------------------------------GIDKPDVRYVIHYSMPKSLTHYYQESGRAGRDGEDAECVLFYSYKDKQVLE 863          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A7S3VCC4_9STRA (ATP-dependent DNA helicase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VCC4_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.730e-27
Identity = 54/124 (43.55%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   16 VDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDKSRLE 387
            V +YHA+    E+ + H EW +GR++L+CAT+AFGM                                     G++KPDVRYV+H+SMPK++TH+YQESGRAGRDG P+ CI+F+AY+DK  LE
Sbjct:   94 VSYYHADLEIHERQKRHHEWLSGRINLLCATIAFGM-------------------------------------GVDKPDVRYVMHYSMPKSITHYYQESGRAGRDGDPADCILFYAYKDKKILE 180          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A397AAD3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AAD3_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.900e-27
Identity = 56/123 (45.53%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    4 SRFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRD 372
            S+  V FYH+E  A+EK+  H+ WS+GR+ LI AT+AFGM                                     GINKPDVRYVIHHS+P+++THFYQESGRAGRDGL ++C+V+++Y+D
Sbjct:  303 SQHWVAFYHSELDADEKSYRHQAWSSGRIKLIVATMAFGM-------------------------------------GINKPDVRYVIHHSLPQSITHFYQESGRAGRDGLHAECVVYYSYKD 388          
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Match: A0A7S0KZB9_9STRA (DNA helicase (Fragment) n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KZB9_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.140e-26
Identity = 53/120 (44.17%), Postives = 69/120 (57.50%), Query Frame = 1
Query:   16 VDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSLSSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLPSKCIVFFAYRDK 375
            V +YHAE   +E+   H  WS GR+ ++CAT+AFGM                                     GI+KPDVRYVIH+SMPK++TH+YQESGRAGRDG  + CI+F+AY+DK
Sbjct:  191 VSYYHAELDQQERFNRHHAWSNGRISVLCATIAFGM-------------------------------------GIDKPDVRYVIHYSMPKSITHYYQESGRAGRDGAKADCILFYAYKDK 273          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18692.4624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L064_9PHAE4.160e-4664.57DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FR28_ECTSI1.690e-4364.57DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
K0SNN9_THAOC3.320e-3450.81DNA helicase n=1 Tax=Thalassiosira oceanica TaxID=... [more]
A0A425DFL9_9STRA4.200e-2846.03DNA helicase (Fragment) n=1 Tax=Aphanomyces astaci... [more]
A0A1E7EUD2_9STRA1.810e-2745.16DNA helicase n=1 Tax=Fragilariopsis cylindrus CCMP... [more]
A0A6A5A8L4_9STRA2.000e-2746.03ATP-dependent DNA helicase n=2 Tax=Aphanomyces ast... [more]
A0A7S4EMT8_9STRA3.370e-2744.35DNA helicase n=1 Tax=Pseudo-nitzschia australis Ta... [more]
A0A7S3VCC4_9STRA3.730e-2743.55ATP-dependent DNA helicase n=1 Tax=Chaetoceros deb... [more]
A0A397AAD3_9STRA6.900e-2745.53Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7S0KZB9_9STRA1.140e-2644.17DNA helicase (Fragment) n=1 Tax=Asterionellopsis g... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18692contigH-paniculata_contig18692:162..677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue2.8e-37
Seed eggNOG ortholog2880.D7FR28
KEGG koko:K03654,ko:K10901
KEGG Pathwayko03018,ko03440,ko03460,map03018,map03440,map03460
KEGG ModuleM00295,M00414
Hectar predicted targeting categoryother localisation
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons2
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929441.0969088-CDS-H-paniculata_contig18692:161..2891622929441.0969088-CDS-H-paniculata_contig18692:161..289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18692 162..289 +
1691480862.636692-CDS-H-paniculata_contig18692:161..2891691480862.636692-CDS-H-paniculata_contig18692:161..289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18692 162..289 +
1622929441.1255956-CDS-H-paniculata_contig18692:418..6771622929441.1255956-CDS-H-paniculata_contig18692:418..677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18692 419..677 +
1691480862.649897-CDS-H-paniculata_contig18692:418..6771691480862.649897-CDS-H-paniculata_contig18692:418..677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18692 419..677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18692.4624.1prot_H-paniculata_contig18692.4624.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18692 162..677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18692.4624.1

>prot_H-paniculata_contig18692.4624.1 ID=prot_H-paniculata_contig18692.4624.1|Name=mRNA_H-paniculata_contig18692.4624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
VSRFTVDFYHAERSAEEKARVHREWSAGRVHLICATVAFGMGRVRALYSL
SSTIVLYMIYSRTAPYQEVISLRTHTHTGINKPDVRYVIHHSMPKTLTHF
YQESGRAGRDGLPSKCIVFFAYRDKSRLE
back to top

mRNA from alignment at H-paniculata_contig18692:162..677+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18692.4624.1 ID=mRNA_H-paniculata_contig18692.4624.1|Name=mRNA_H-paniculata_contig18692.4624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=516bp|location=Sequence derived from alignment at H-paniculata_contig18692:162..677+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAGCAGGTTTACTGTAGACTTTTACCACGCGGAACGATCGGCGGAAGA GAAAGCCAGGGTACATCGGGAATGGAGTGCCGGACGGGTTCATCTCATCT GCGCCACTGTAGCTTTCGGCATGGGTAGGTTTTTGGTTTTTACGAACATG CTTTATTTTCCATCGTTTTTTTTCATCTCATGCTTTTTTGGGGGTTTTTT GGGTAGGAGTCGGGGGGGGGGGAGTAAAATTGAACCACTAGGAGGAGGGA GTCAGAGAGTGCGCGCTTTATATTCACTTTCTTCAACTATAGTACTGTAC ATGATATACTCGCGAACGGCGCCCTATCAAGAGGTTATTTCTTTACGCAC ACATACGCACACAGGTATCAACAAGCCGGACGTTCGGTACGTGATCCATC ACTCGATGCCCAAAACCCTGACGCACTTCTACCAGGAGTCGGGGAGGGCT GGGCGCGACGGGCTTCCGTCCAAGTGCATCGTGTTCTTCGCCTATCGGGA CAAGTCTCGTCTCGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig18692:162..677+

>mRNA_H-paniculata_contig18692.4624.1 ID=mRNA_H-paniculata_contig18692.4624.1|Name=mRNA_H-paniculata_contig18692.4624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig18692:162..677+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAGCAGGTTTACTGTAGACTTTTACCACGCGGAACGATCGGCGGAAGA
GAAAGCCAGGGTACATCGGGAATGGAGTGCCGGACGGGTTCATCTCATCT
GCGCCACTGTAGCTTTCGGCATGGGTAGGTGAGCAGGTTTACTGTAGACT
TTTACCACGCGGAACGATCGGCGGAAGAGAAAGCCAGGGTACATCGGGAA
TGGAGTGCCGGACGGGTTCATCTCATCTGCGCCACTGTAGCTTTCGGCAT
GGGTAGAGTGCGCGCTTTATATTCACTTTCTTCAACTATAGTACTGTACA
TGATATACTCGCGAACGGCGCCCTATCAAGAGGTTATTTCTTTACGCACA
CATACGCACACAGGTATCAACAAGCCGGACGTTCGGTACGTGATCCATCA
CTCGATGCCCAAAACCCTGACGCACTTCTACCAGGAGTCGGGGAGGGCTG
GGCGCGACGGGCTTCCGTCCAAGTGCATCGTGTTCTTCGCCTATCGGGAC
AAGTCTCGTCTCGAGAGTGCGCGCTTTATATTCACTTTCTTCAACTATAG
TACTGTACATGATATACTCGCGAACGGCGCCCTATCAAGAGGTTATTTCT
TTACGCACACATACGCACACAGGTATCAACAAGCCGGACGTTCGGTACGT
GATCCATCACTCGATGCCCAAAACCCTGACGCACTTCTACCAGGAGTCGG
GGAGGGCTGGGCGCGACGGGCTTCCGTCCAAGTGCATCGTGTTCTTCGCC
TATCGGGACAAGTCTCGTCTCGAG
back to top