mRNA_H-paniculata_contig18646.4613.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18646.4613.1
Unique NamemRNA_H-paniculata_contig18646.4613.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18646.4613.1 vs. uniprot
Match: A0A8F0K273_9PHAE (Ribosomal protein S19 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0K273_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 8.800e-47
Identity = 74/88 (84.09%), Postives = 81/88 (92.05%), Query Frame = 1
Query:    1 MPRSKWKTPFIDKSLFKRLNFEYENQPTWSRRSTIYPALVGLELPIHNGKEMVTRKITPQMVGHKLGEFVTTRKSFYKKLKRGGEKNK 264
            MPRSKWKTPFIDKSLFKRL+FE ENQPTWSRRSTIYPA+VGL+LPI+NGKEMVTRKIT QMVGHKLGEFV TRKSF +K + GG+K K
Sbjct:    1 MPRSKWKTPFIDKSLFKRLDFECENQPTWSRRSTIYPAIVGLQLPIYNGKEMVTRKITSQMVGHKLGEFVPTRKSFIQKKRGGGKKKK 88          
BLAST of mRNA_H-paniculata_contig18646.4613.1 vs. uniprot
Match: Q94Z05_PYLLI (Ribosomal protein S19 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z05_PYLLI)

HSP 1 Score: 132 bits (332), Expect = 1.470e-38
Identity = 64/86 (74.42%), Postives = 73/86 (84.88%), Query Frame = 1
Query:    1 MPRSKWKTPFIDKSLFKRLNFEYENQPTWSRRSTIYPALVGLELPIHNGKEMVTRKITPQMVGHKLGEFVTTRKSFYKKLKRGGEK 258
            M RS WKTPFIDKSL KRL  ++E +PTWSRRSTIYPA VGL+LPIHNGK MVTRKI  +MVGHKLGEFVTTRK+F  K+K+G +K
Sbjct:    1 MSRSNWKTPFIDKSLLKRLKPDHEKKPTWSRRSTIYPAAVGLKLPIHNGKNMVTRKIKSEMVGHKLGEFVTTRKTFKPKIKKGLKK 86          
BLAST of mRNA_H-paniculata_contig18646.4613.1 vs. uniprot
Match: A0A1I9LWB1_9PHAE (Ribosomal protein S19 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LWB1_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.450e-36
Identity = 60/82 (73.17%), Postives = 70/82 (85.37%), Query Frame = 1
Query:    1 MPRSKWKTPFIDKSLFKRLNFEYENQPTWSRRSTIYPALVGLELPIHNGKEMVTRKITPQMVGHKLGEFVTTRKSFYKKLKR 246
            MPRS WKTPFIDKSL KRL   +E +PTWSRRSTIYPA +GL+L I+NGK+M+TRKI P+MVGHKLGEFVTTRK+F  K K+
Sbjct:    1 MPRSNWKTPFIDKSLLKRLTPGHEKKPTWSRRSTIYPAAIGLKLNIYNGKDMITRKIKPEMVGHKLGEFVTTRKTFIPKKKK 82          
BLAST of mRNA_H-paniculata_contig18646.4613.1 vs. uniprot
Match: Q8LWZ8_9PHAE (Ribosomal protein S19 n=50 Tax=Phaeophyceae TaxID=2870 RepID=Q8LWZ8_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.940e-36
Identity = 63/89 (70.79%), Postives = 74/89 (83.15%), Query Frame = 1
Query:    1 MPRSKWKTPFIDKSLFKRLNFEYENQPTWSRRSTIYPALVGLELPIHNGKEMVTRKITPQMVGHKLGEFVTTRKSFY-KKLKRGGEKNK 264
            M RS WKTPFIDKSL KRL  E+E +PTWSRRSTIYPA VGL+L I+NGK+M++RKI P+MVGHKLGEFVTTRK+F  KK+K+   K K
Sbjct:    1 MSRSNWKTPFIDKSLLKRLTPEHEKKPTWSRRSTIYPAAVGLKLQIYNGKDMISRKIKPEMVGHKLGEFVTTRKNFIAKKIKKTTTKKK 89          
BLAST of mRNA_H-paniculata_contig18646.4613.1 vs. uniprot
Match: Q2TUF6_9PHAE (Ribosomal protein S19 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUF6_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 4.050e-36
Identity = 60/82 (73.17%), Postives = 70/82 (85.37%), Query Frame = 1
Query:    1 MPRSKWKTPFIDKSLFKRLNFEYENQPTWSRRSTIYPALVGLELPIHNGKEMVTRKITPQMVGHKLGEFVTTRKSFYKKLKR 246
            M RS WKTPFIDKSL KRLN E++ +PTWSRRSTIYPA+VGL+L IHNG++MV RKI P+MVGHKLGEFV TRK+F  K K+
Sbjct:    1 MSRSNWKTPFIDKSLLKRLNPEHDKKPTWSRRSTIYPAVVGLKLRIHNGRDMVDRKIKPEMVGHKLGEFVPTRKTFVPKKKK 82          
BLAST of mRNA_H-paniculata_contig18646.4613.1 vs. uniprot
Match: A0A3G5FPQ0_9PHAE (Ribosomal protein S19 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPQ0_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 7.490e-36
Identity = 61/82 (74.39%), Postives = 69/82 (84.15%), Query Frame = 1
Query:    1 MPRSKWKTPFIDKSLFKRLNFEYENQPTWSRRSTIYPALVGLELPIHNGKEMVTRKITPQMVGHKLGEFVTTRKSFYKKLKR 246
            M RS WKTPFIDKSL KRL+ +YE +PTWSRRSTIYPA VGL+L I+NGKEMV RKI P+MVGHKLGEFV TRK+F  K K+
Sbjct:    1 MSRSNWKTPFIDKSLLKRLDPKYEKKPTWSRRSTIYPAAVGLKLQIYNGKEMVYRKIKPEMVGHKLGEFVATRKTFIPKKKK 82          
BLAST of mRNA_H-paniculata_contig18646.4613.1 vs. uniprot
Match: A0A4D6E522_9PHAE (Ribosomal protein S19 n=4 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E522_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.270e-35
Identity = 59/82 (71.95%), Postives = 69/82 (84.15%), Query Frame = 1
Query:    1 MPRSKWKTPFIDKSLFKRLNFEYENQPTWSRRSTIYPALVGLELPIHNGKEMVTRKITPQMVGHKLGEFVTTRKSFYKKLKR 246
            M RS WKTPFIDKSL KRL  ++E +P WSRRSTIYPA VGL+L I+NGK+M+TRKI P+MVGHKLGEFVTTRK+F  K K+
Sbjct:    1 MSRSNWKTPFIDKSLLKRLTPQHEKKPIWSRRSTIYPAAVGLKLQIYNGKDMITRKIKPEMVGHKLGEFVTTRKNFIAKKKK 82          
BLAST of mRNA_H-paniculata_contig18646.4613.1 vs. uniprot
Match: A0A8F0FDL3_9PHAE (Ribosomal protein S19 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FDL3_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.430e-35
Identity = 60/88 (68.18%), Postives = 70/88 (79.55%), Query Frame = 1
Query:    1 MPRSKWKTPFIDKSLFKRLNFEYENQPTWSRRSTIYPALVGLELPIHNGKEMVTRKITPQMVGHKLGEFVTTRKSFYKKLKRGGEKNK 264
            M RS WKTPF+DKS  KRL  ++E +PTWSRRSTIYPA VGL+L IHNGKEM++RKI P+MVGHKLGEFV TRK+F  K K+   K K
Sbjct:    1 MARSNWKTPFVDKSFLKRLTPQHERKPTWSRRSTIYPAAVGLKLLIHNGKEMISRKIKPEMVGHKLGEFVPTRKTFIPKKKKTMVKKK 88          
BLAST of mRNA_H-paniculata_contig18646.4613.1 vs. uniprot
Match: E6ZER8_ECTSI (Ribosomal protein S19 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZER8_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 6.520e-35
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 1
Query:    1 MPRSKWKTPFIDKSLFKRLNFEYENQPTWSRRSTIYPALVGLELPIHNGKEMVTRKITPQMVGHKLGEFVTTRKSFYKKLK 243
            M RS WKTPFIDKSL KRL  E E +PTWSRRSTIYPA VGL++ IHNGK+M+ RKI P+MVGHKLGEFV TRK F  K K
Sbjct:    1 MSRSSWKTPFIDKSLLKRLTRELEKKPTWSRRSTIYPAAVGLKIHIHNGKDMIARKIKPEMVGHKLGEFVATRKPFIPKKK 81          
BLAST of mRNA_H-paniculata_contig18646.4613.1 vs. uniprot
Match: A0A8F0FCH2_9PHAE (Ribosomal protein S19 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FCH2_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.440e-34
Identity = 59/82 (71.95%), Postives = 69/82 (84.15%), Query Frame = 1
Query:    1 MPRSKWKTPFIDKSLFKRLNFEYENQPTWSRRSTIYPALVGLELPIHNGKEMVTRKITPQMVGHKLGEFVTTRKSFYKKLKR 246
            M RS WKTPFIDKSL KRL+  +E +PTWSRRSTIYPA VGL+L I+NGKEM++RKI P+MVGHKLGEFV TRK+F  K K+
Sbjct:    1 MSRSSWKTPFIDKSLLKRLHPMHEKKPTWSRRSTIYPAAVGLKLHIYNGKEMISRKIKPEMVGHKLGEFVMTRKTFIPKKKK 82          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18646.4613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0K273_9PHAE8.800e-4784.09Ribosomal protein S19 n=1 Tax=Protohalopteris sp. ... [more]
Q94Z05_PYLLI1.470e-3874.42Ribosomal protein S19 n=1 Tax=Pylaiella littoralis... [more]
A0A1I9LWB1_9PHAE1.450e-3673.17Ribosomal protein S19 n=1 Tax=Pleurocladia lacustr... [more]
Q8LWZ8_9PHAE2.940e-3670.79Ribosomal protein S19 n=50 Tax=Phaeophyceae TaxID=... [more]
Q2TUF6_9PHAE4.050e-3673.17Ribosomal protein S19 n=2 Tax=Desmarestia TaxID=31... [more]
A0A3G5FPQ0_9PHAE7.490e-3674.39Ribosomal protein S19 n=1 Tax=Cladosiphon okamuran... [more]
A0A4D6E522_9PHAE2.270e-3571.95Ribosomal protein S19 n=4 Tax=Laminariaceae TaxID=... [more]
A0A8F0FDL3_9PHAE3.430e-3568.18Ribosomal protein S19 n=1 Tax=Analipus japonicus T... [more]
E6ZER8_ECTSI6.520e-3572.84Ribosomal protein S19 n=2 Tax=Ectocarpus siliculos... [more]
A0A8F0FCH2_9PHAE1.440e-3471.95Ribosomal protein S19 n=1 Tax=Chorda asiatica TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18646contigH-paniculata_contig18646:955..1221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score80.5
Seed ortholog evalue4.4e-13
Seed eggNOG ortholog626887.J057_13990
Preferred namerpsS
KEGG koko:K02965
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
EggNOG OGs1RGYX@1224,1S5VT@1236,4677X@72275,COG0185@1,COG0185@2
COG Functional cat.J
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size267
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929439.648024-CDS-H-paniculata_contig18646:954..12211622929439.648024-CDS-H-paniculata_contig18646:954..1221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18646 955..1221 -
1691480862.1136084-CDS-H-paniculata_contig18646:954..12211691480862.1136084-CDS-H-paniculata_contig18646:954..1221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18646 955..1221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18646.4613.1prot_H-paniculata_contig18646.4613.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18646 955..1221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18646.4613.1

>prot_H-paniculata_contig18646.4613.1 ID=prot_H-paniculata_contig18646.4613.1|Name=mRNA_H-paniculata_contig18646.4613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MPRSKWKTPFIDKSLFKRLNFEYENQPTWSRRSTIYPALVGLELPIHNGK
EMVTRKITPQMVGHKLGEFVTTRKSFYKKLKRGGEKNK*
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mRNA from alignment at H-paniculata_contig18646:955..1221-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18646.4613.1 ID=mRNA_H-paniculata_contig18646.4613.1|Name=mRNA_H-paniculata_contig18646.4613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig18646:955..1221- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAAGATCTAAATGGAAAACACCTTTTATAGATAAAAGCCTTTTTAA AAGGTTAAATTTTGAATATGAAAATCAACCAACCTGGTCCCGAAGATCAA CAATCTATCCAGCTCTTGTTGGTTTAGAATTACCTATACATAATGGTAAA GAAATGGTAACGCGTAAAATTACACCACAAATGGTAGGTCATAAATTAGG TGAATTTGTTACTACACGAAAAAGTTTTTATAAAAAATTAAAAAGGGGAG GGGAAAAAAATAAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig18646:955..1221-

>mRNA_H-paniculata_contig18646.4613.1 ID=mRNA_H-paniculata_contig18646.4613.1|Name=mRNA_H-paniculata_contig18646.4613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig18646:955..1221- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAAGATCTAAATGGAAAACACCTTTTATAGATAAAAGCCTTTTTAA
AAGGTTAAATTTTGAATATGAAAATCAACCAACCTGGTCCCGAAGATCAA
CAATCTATCCAGCTCTTGTTGGTTTAGAATTACCTATACATAATGGTAAA
GAAATGGTAACGCGTAAAATTACACCACAAATGGTAGGTCATAAATTAGG
TGAATTTGTTACTACACGAAAAAGTTTTTATAAAAAATTAAAAAGGGGAG
GGGAAAAAAATAAATAAATGCCAAGATCTAAATGGAAAACACCTTTTATA
GATAAAAGCCTTTTTAAAAGGTTAAATTTTGAATATGAAAATCAACCAAC
CTGGTCCCGAAGATCAACAATCTATCCAGCTCTTGTTGGTTTAGAATTAC
CTATACATAATGGTAAAGAAATGGTAACGCGTAAAATTACACCACAAATG
GTAGGTCATAAATTAGGTGAATTTGTTACTACACGAAAAAGTTTTTATAA
AAAATTAAAAAGGGGAGGGGAAAAAAATAAATAA
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