mRNA_H-paniculata_contig1862.4606.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1862.4606.1
Unique NamemRNA_H-paniculata_contig1862.4606.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1862.4606.1 vs. uniprot
Match: D7FXY4_ECTSI (Repressor of RNA polymerase III transcription n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXY4_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 7.830e-120
Identity = 210/289 (72.66%), Postives = 222/289 (76.82%), Query Frame = 1
Query:  511 MKYLDDPRLAYWSNFLESVELGDRLLSVRADAFSCKKAGDDKRFSKELERHMKEKMATSP--------------------------------------ASYGTSPSFGELADVGVRRTLVDLICTMNASFPDYDFSGMRPDHFQKEASVSFVRNKVNAGLAEVSVIHNKIFLESFWADLDEVMKLKDCEVYSYSPDTEGDPFTEGCLWSFNHFFLNKSLKRILFLHCTTKSKLHMMEDGMRNSDGXXXXXXXXXXXXXXXXXXXXGEKYPGEIMSDMDMEPAGGDDDSM 1263
            MKYLD+PRLAYWSNFL SVELGDRLLSVR DAFSCKKAGDDKR SKELER +   + T                                        A++GTSPSFG L DVGVRRTLVDLICTMNASFPDYDFSG+RPD F KEASVS VRNKVNA LAEVSVIHNKIFLESFWADLDEVM LKDCEVYSYSPD EGDPFTEGCLWSFNHFFLNK+LKR+LFLHCTTKSKLH+MED + +   XXXXXXXXXXXXXXXXXXXX    PG IM DMDMEPAGGDDDS+
Sbjct:    1 MKYLDEPRLAYWSNFLRSVELGDRLLSVRTDAFSCKKAGDDKRLSKELERQLSASLPTPSRSSSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAFGTSPSFGVLTDVGVRRTLVDLICTMNASFPDYDFSGVRPDSFDKEASVSLVRNKVNAALAEVSVIHNKIFLESFWADLDEVMTLKDCEVYSYSPDMEGDPFTEGCLWSFNHFFLNKNLKRVLFLHCTTKSKLHVMEDMLGSDSXXXXXXXXXXXXXXXXXXXXXXXTCPGYIMGDMDMEPAGGDDDSL 289          
BLAST of mRNA_H-paniculata_contig1862.4606.1 vs. uniprot
Match: A0A7S2B0Q0_9STRA (Repressor of RNA polymerase III transcription n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B0Q0_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.800e-64
Identity = 106/194 (54.64%), Postives = 142/194 (73.20%), Query Frame = 1
Query:  511 MKYLDDPRLAYWSNFLESVELGDRLLSVRADAFSCKKAGDDKRFSKELERHMKEKMATSPASYGTSPSFGELADVGVRRTLVDLICTMNASFPDYDFSGMRPDHFQKEASVSFVRNKVNAGLAEVSVIHNKIFLESFWADLDEVMKLKDCEVYSYSPDTEGDPFTEGCLWSFNHFFLNKSLKRILFLHCTTKSK 1092
            MK+L+ P+L   ++FL + E+GDR+L+ R +AFSCK+AG+DKR SK LE+   +++A SP + G+SP  G L+D G RR L+DLI TMNASFPD+DFS +RP+ F KE  VS V + +N  LAE+S  +N  FLE  W  ++EV+KLK+CE+YSY PD E DPF+EG LW+FN FF NK+LKRIL+  C   SK
Sbjct:    1 MKFLEQPQLEMLTSFLSNREIGDRILNGRIEAFSCKRAGEDKRLSKMLEQQYVDELACSPTALGSSP-LGPLSDSGTRRLLIDLISTMNASFPDHDFSSVRPEQFLKEQHVSLVMSNINMHLAELSETYNSSFLEELWMSIEEVVKLKECEIYSYVPDMEEDPFSEGNLWTFNFFFFNKNLKRILYFTCIATSK 193          
BLAST of mRNA_H-paniculata_contig1862.4606.1 vs. uniprot
Match: A0A7R9U9D7_9STRA (Repressor of RNA polymerase III transcription n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9D7_9STRA)

HSP 1 Score: 219 bits (559), Expect = 2.610e-64
Identity = 107/208 (51.44%), Postives = 144/208 (69.23%), Query Frame = 1
Query:  511 MKYLDDPRLAYWSNFLESVELGDRLLSVRADAFSCKKAGDDKRFSKELERHMKEKMATSPASYGTSPSFGELADVGVRRTLVDLICTMNASFPDYDFSGMRPDHFQKEASVSFVRNKVNAGLAEVSVIH--------NKIFLESFWADLDEVMKLKDCEVYSYSPDTEGDPFTEGCLWSFNHFFLNKSLKRILFLHCTTKSKLHMMED 1110
            MKYL+DPRLA+++N L   E+GD +L  R +AFSCK+AGDDKR S++L+R +K+++ATSP S   SP  G L++   R  L+DLI TMNASFPDYDFS +RP+ F KE+ +SFV N +N  LA V             K FL   W  ++++++L++CEVY Y PD +GDPF+EG LWSFN+FF NK+LKRI+F  C  +SKL    D
Sbjct:    1 MKYLEDPRLAHYTNLLSDFEMGDIVLDGRVEAFSCKRAGDDKRLSRKLDRQLKQELATSPKSPAESP-LGPLSESSTRNLLIDLIITMNASFPDYDFSSLRPEQFLKESHLSFVVNDINTHLAHVDEFRIEGLTSGTEKKFLVDVWRTVEDIIRLRECEVYRYIPDLDGDPFSEGTLWSFNYFFFNKALKRIIFFTCIARSKLFSSVD 207          
BLAST of mRNA_H-paniculata_contig1862.4606.1 vs. uniprot
Match: F0YN32_AURAN (Repressor of RNA polymerase III transcription n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN32_AURAN)

HSP 1 Score: 195 bits (495), Expect = 4.080e-55
Identity = 95/194 (48.97%), Postives = 131/194 (67.53%), Query Frame = 1
Query:  511 MKYLDDPRLAYWSNFLESVELGDRLLSVRADAFSCKKAGDDKRFSKELERHMKEKMATSPASYGTSPSFGELADVGVRRTLVDLICTMNASFPDYDFSGMRPDHFQKEASVSFVRNKVNAGLAEVSVIHNKIFLESFWADLDEVMKLKDCEVYSYSPDTEGDPFTEGCLWSFNHFFLNKSLKRILFLHCTTKSK 1092
            MK L++ RL+  + FL    LGDR++  R +AFSCK+AGDDK+ SK+LE+   +++ +SP S  T+   G L+    RR L+DLI TMNASFPD+DFS +RP+ F +EAS  FV       L+E+S       L+  WA ++E + LKDCEV+SY PD + DPF+EG LWSFN+FF NK+LKRI++  C  +SK
Sbjct:    1 MKLLENNRLSALTAFLTERSLGDRVIDGRVEAFSCKRAGDDKKLSKQLEKQYADELTSSPGSLDTTSPLGVLSASSTRRLLIDLISTMNASFPDHDFSALRPEQFCREASADFVARSCTRYLSEISD-QGFDLLQELWAAVEEAVSLKDCEVFSYVPDLDSDPFSEGALWSFNYFFFNKTLKRIVYFSCVARSK 193          
BLAST of mRNA_H-paniculata_contig1862.4606.1 vs. uniprot
Match: A0A836CAL9_9STRA (Repressor of RNA polymerase III transcription n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAL9_9STRA)

HSP 1 Score: 194 bits (494), Expect = 7.780e-55
Identity = 97/195 (49.74%), Postives = 135/195 (69.23%), Query Frame = 1
Query:  511 MKYLDDPRLAYWSNFLESVELGDRLLSVRADAFSCKKAGDDKRFSKELERHMKEKMATSPASYGTSPSFGELADVGVRRTLVDLICTMNASFPDYDFSGMRPDHFQKEASVSFVRNKVNAGLAEVSVIHNKIFLESFWADLDEVMKLKDCEVYSYSPDTE-GDPFTEGCLWSFNHFFLNKSLKRILFLHCTTKSK 1092
            MK+++DP+LA  SN++   ELGD++L+ R ++F+CK AG+DK+FSK+LE  M +K   SPAS   +P+FG L +   RR L+DLI TMN  FPDYDFS    DHF K+   + V N VNA L +++ +++  FLE  W  +DE +KLK C VYSY PD + GDPFT+G LWSFN+FF N   K++L+L C  ++K
Sbjct:    1 MKFIEDPKLAELSNWITGKELGDKVLTCRIESFTCKMAGEDKKFSKKLEEEM-DKAGVSPAS---APNFGPLNNTSARRILIDLIITMNMHFPDYDFSKAGADHFLKQPDATKVVNAVNAQLVDLTRLYHVNFLEQLWGAVDESIKLKQCSVYSYVPDADLGDPFTDGSLWSFNYFFYNPLRKKMLYLTCIARNK 191          
BLAST of mRNA_H-paniculata_contig1862.4606.1 vs. uniprot
Match: A0A8J2SMK1_9STRA (Repressor of RNA polymerase III transcription n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMK1_9STRA)

HSP 1 Score: 190 bits (482), Expect = 4.000e-53
Identity = 95/200 (47.50%), Postives = 128/200 (64.00%), Query Frame = 1
Query:  511 MKYLDDPRLAYWSNFLESVELGDRLLSVRADAFSCKKAGDDKRFSKELERHMKEKMATSPASYGTSPSFGELADVGVRRTLVDLICTMNASFPDYDFSGMRPDHFQKEASVSFVRNKVNAGLAEVSVIHN------KIFLESFWADLDEVMKLKDCEVYSYSPDTEGDPFTEGCLWSFNHFFLNKSLKRILFLHCTTKSK 1092
            MK L++PRL+  + FL    LG+R+L  R +AFSCK+AG+DK+ +KELE     +   SP+S   S   G LA    RR LVDLI T+NASFPD+DFS +RP+ F +EA   F        LAE++            FL+  WA ++E ++L++CEVYSY PD E DPF+EG LWSFN+FF NK LKRI++L C  +S+
Sbjct:    1 MKLLENPRLSALTAFLSQRRLGERVLDGRVEAFSCKRAGEDKKLAKELEAQFAAESRNSPSSMEASSPLGALAQPATRRLLVDLIATLNASFPDHDFSNLRPEQFCREAGAQFAVRACARHLAELATAERFRAPGGGEFLDELWAAIEEAIQLRECEVYSYVPDGESDPFSEGALWSFNYFFFNKRLKRIVYLSCVARSR 200          
BLAST of mRNA_H-paniculata_contig1862.4606.1 vs. uniprot
Match: A0A6G0XTH3_9STRA (Repressor of RNA polymerase III transcription n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XTH3_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.730e-52
Identity = 92/209 (44.02%), Postives = 134/209 (64.11%), Query Frame = 1
Query:  493 LAFVETMKYLDDPRLAYWSNFLESVELGDRLLSVRADAFSCKKAGDDKRFSKELERHMKEKMATSPASYGTSPSFGELADVGVRRTLVDLICTMNASFPDYDFSGMRPDHFQKEASVSFVRNKVNAGLAEVSVIHNKIFLESFWADLDEVMKLKDCEVYSYSPDTEG--DPFTEGCLWSFNHFFLNKSLKRILFLHCTTKSKLHMMEDG 1113
            LA  + MKYL++  L++ +  L    +GDR+++ R + FSCKKAG DK+ +K LE   ++     P +  ++ S G LAD   R+ L++LI TMNASFPDYDFS ++P+ F KE  +  + N +N  LAE+  + N  FLE  W  + E ++  +CEVYSY PD +G  DPF++G LWSFN+FF NK +K+IL+  C ++S  H M DG
Sbjct:    3 LASFKKMKYLEEKTLSWANAALNEFCVGDRVINGRLECFSCKKAGQDKKLAKSLELIYQQSNNYPPTTEQSNVSIGTLADSNTRKLLINLISTMNASFPDYDFSDLKPERFHKEPDMRMIVNAINTQLAEIVEMDNMGFLEKLWESIVEAIQPSECEVYSYIPDMDGCSDPFSDGTLWSFNYFFYNKEMKKILYFTCMSRSAFHDMRDG 211          
BLAST of mRNA_H-paniculata_contig1862.4606.1 vs. uniprot
Match: H3GX22_PHYRM (Repressor of RNA polymerase III transcription n=25 Tax=Peronosporaceae TaxID=4777 RepID=H3GX22_PHYRM)

HSP 1 Score: 183 bits (464), Expect = 1.520e-50
Identity = 89/192 (46.35%), Postives = 127/192 (66.15%), Query Frame = 1
Query:  511 MKYLDDPRLAYWSNFLESVELGDRLLSVRADAFSCKKAGDDKRFSKELERHMKEKMATSPASYGTSPSFGELADVGVRRTLVDLICTMNASFPDYDFSGMRPDHFQKEASVSFVRNKVNAGLAEVSVIHNKIFLESFWADLDEVMKLKDCEVYSYSPDTEGDPFTEGCLWSFNHFFLNKSLKRILFLHCTTK 1086
            MKYL++P+L++ ++ L S E+GDR+L  + + +SCKKAG DKR +K LE + +++M  +    G+SP  G LA    R+ L++LI TMNASFPDYDFS ++P+ F+KE        +VN  LAE+       F+E  W  + E +KL +CEVYSY PD + DPF++G LWSFN+FF NK  K+IL+  C  K
Sbjct:    1 MKYLEEPQLSWLNSVLGSYEVGDRVLRGKLETYSCKKAGSDKRLAKSLELYYQQEMEAAADLLGSSP-LGPLAAPATRKLLINLISTMNASFPDYDFSAVKPEQFRKEPDFRIALQRVNHDLAELLEAEGNGFVEKMWEGIAEAIKLDECEVYSYIPDMDADPFSDGNLWSFNYFFYNKVQKKILYFTCICK 191          
BLAST of mRNA_H-paniculata_contig1862.4606.1 vs. uniprot
Match: A0A1V9Z321_9STRA (Repressor of RNA polymerase III transcription n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z321_9STRA)

HSP 1 Score: 181 bits (459), Expect = 6.360e-50
Identity = 94/200 (47.00%), Postives = 129/200 (64.50%), Query Frame = 1
Query:  511 MKYLDDPRLAYWSNFLESVELGDRLLSVRADAFSCKKAGDDKRFSKELERHMKEKMATSPASYGTSP-----SFGELADVGVRRTLVDLICTMNASFPDYDFSGMRPDHFQKEASVSFVRNKVNAGLAEVSVIHNKIFLESFWADLDEVMKLKDCEVYSYSPDTEG--DPFTEGCLWSFNHFFLNKSLKRILFLHCTTKS 1089
            MKYLD+P L + +  +  V +GDR+++ R +AFSCKKAG DK+ +K LE           A+Y  +P     S G LAD   R+ L++LI TMNASFPDYDFS ++P+ F KE  +  V N VNA LAE+  + +  FLE  W  +   +  KDCE+YSY PD +G  DPF++G LWSFN+FF NK+LK+IL+  C ++S
Sbjct:    1 MKYLDEPTLDWANAAMSEVSVGDRVINGRLEAFSCKKAGADKKLAKSLE-----------AAYQQTPDVGANSIGSLADSNTRKLLINLISTMNASFPDYDFSDLKPEQFHKEVDLRLVVNGVNAQLAEIVEMDDMGFLEKLWESVFAAIAPKDCEIYSYIPDMDGCSDPFSDGTLWSFNYFFYNKALKKILYFTCMSRS 189          
BLAST of mRNA_H-paniculata_contig1862.4606.1 vs. uniprot
Match: A0A0N7L3A5_PLAHL (Repressor of RNA polymerase III transcription n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0N7L3A5_PLAHL)

HSP 1 Score: 180 bits (457), Expect = 1.580e-49
Identity = 86/192 (44.79%), Postives = 126/192 (65.62%), Query Frame = 1
Query:  511 MKYLDDPRLAYWSNFLESVELGDRLLSVRADAFSCKKAGDDKRFSKELERHMKEKMATSPASYGTSPSFGELADVGVRRTLVDLICTMNASFPDYDFSGMRPDHFQKEASVSFVRNKVNAGLAEVSVIHNKIFLESFWADLDEVMKLKDCEVYSYSPDTEGDPFTEGCLWSFNHFFLNKSLKRILFLHCTTK 1086
            MKYL++P+L++ ++ L S E+GDR+L+ + + +SCKKAG DKR +K LE + ++++  S    G+SP  G +A    R+ L++LI TMNASFPDYDFS  RP  F+KE+       ++N  LAE+       F E  W  + E +KL +C+VYSY PD + DPF++G LWSFN+FF NK  K++L+  C  K
Sbjct:    1 MKYLEEPQLSWLNSVLGSYEIGDRVLNGKLETYSCKKAGSDKRLAKSLELYYQQEIEASAEFLGSSP-LGPIAAPATRKLLINLISTMNASFPDYDFSAARPGQFRKESDFRIALQRINHDLAELLDAEGNGFAEKMWEAIAEAIKLDECDVYSYIPDMDSDPFSDGNLWSFNYFFYNKMQKKVLYFTCLCK 191          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1862.4606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXY4_ECTSI7.830e-12072.66Repressor of RNA polymerase III transcription n=2 ... [more]
A0A7S2B0Q0_9STRA1.800e-6454.64Repressor of RNA polymerase III transcription n=1 ... [more]
A0A7R9U9D7_9STRA2.610e-6451.44Repressor of RNA polymerase III transcription n=1 ... [more]
F0YN32_AURAN4.080e-5548.97Repressor of RNA polymerase III transcription n=1 ... [more]
A0A836CAL9_9STRA7.780e-5549.74Repressor of RNA polymerase III transcription n=1 ... [more]
A0A8J2SMK1_9STRA4.000e-5347.50Repressor of RNA polymerase III transcription n=1 ... [more]
A0A6G0XTH3_9STRA1.730e-5244.02Repressor of RNA polymerase III transcription n=1 ... [more]
H3GX22_PHYRM1.520e-5046.35Repressor of RNA polymerase III transcription n=25... [more]
A0A1V9Z321_9STRA6.360e-5047.00Repressor of RNA polymerase III transcription n=1 ... [more]
A0A0N7L3A5_PLAHL1.580e-4944.79Repressor of RNA polymerase III transcription n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1862contigH-paniculata_contig1862:8704..16216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.8
Seed ortholog evalue3.3e-98
Seed eggNOG ortholog2880.D7FXY4
Preferred nameMAF1
KEGG koko:K12394
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000182,GO:0000994,GO:0001016,GO:0001030,GO:0001031,GO:0001032,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006325,GO:0006342,GO:0006355,GO:0006357,GO:0006359,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016020,GO:0016043,GO:0016458,GO:0016480,GO:0019219,GO:0019222,GO:0019899,GO:0030424,GO:0030425,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0036477,GO:0040029,GO:0042995,GO:0043005,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044212,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045202,GO:0045814,GO:0045892,GO:0045934,GO:0048471,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050811,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060077,GO:0060255,GO:0061587,GO:0065007,GO:0070013,GO:0070063,GO:0071840,GO:0071944,GO:0080084,GO:0080090,GO:0097159,GO:0097447,GO:0097458,GO:0120025,GO:0120038,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA polymerase III core binding
EggNOG OGsCOG5046@1,KOG3104@2759
Ec32 ortholog descriptionRepressor of RNA polymerase III transcription Maf1
Ec32 orthologEc-19_002040.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons6
Model size1702
Cds size759
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1862.4606.1prot_H-paniculata_contig1862.4606.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1862 9214..15783 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929438.7112756-UTR-H-paniculata_contig1862:8703..92131622929438.7112756-UTR-H-paniculata_contig1862:8703..9213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1862 8704..9213 +
1691480861.6386669-UTR-H-paniculata_contig1862:8703..92131691480861.6386669-UTR-H-paniculata_contig1862:8703..9213Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1862 8704..9213 +
1622929438.8336742-UTR-H-paniculata_contig1862:15783..162161622929438.8336742-UTR-H-paniculata_contig1862:15783..16216Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1862 15784..16216 +
1691480861.721829-UTR-H-paniculata_contig1862:15783..162161691480861.721829-UTR-H-paniculata_contig1862:15783..16216Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1862 15784..16216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929438.7259238-CDS-H-paniculata_contig1862:9213..93161622929438.7259238-CDS-H-paniculata_contig1862:9213..9316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 9214..9316 +
1691480861.6589067-CDS-H-paniculata_contig1862:9213..93161691480861.6589067-CDS-H-paniculata_contig1862:9213..9316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 9214..9316 +
1622929438.7381437-CDS-H-paniculata_contig1862:11746..119941622929438.7381437-CDS-H-paniculata_contig1862:11746..11994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 11747..11994 +
1691480861.667482-CDS-H-paniculata_contig1862:11746..119941691480861.667482-CDS-H-paniculata_contig1862:11746..11994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 11747..11994 +
1622929438.7512786-CDS-H-paniculata_contig1862:13083..131851622929438.7512786-CDS-H-paniculata_contig1862:13083..13185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 13084..13185 +
1691480861.6761577-CDS-H-paniculata_contig1862:13083..131851691480861.6761577-CDS-H-paniculata_contig1862:13083..13185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 13084..13185 +
1622929438.7720537-CDS-H-paniculata_contig1862:14221..143461622929438.7720537-CDS-H-paniculata_contig1862:14221..14346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 14222..14346 +
1691480861.6840057-CDS-H-paniculata_contig1862:14221..143461691480861.6840057-CDS-H-paniculata_contig1862:14221..14346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 14222..14346 +
1622929438.8085353-CDS-H-paniculata_contig1862:15387..155211622929438.8085353-CDS-H-paniculata_contig1862:15387..15521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 15388..15521 +
1691480861.6919665-CDS-H-paniculata_contig1862:15387..155211691480861.6919665-CDS-H-paniculata_contig1862:15387..15521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 15388..15521 +
1622929438.820956-CDS-H-paniculata_contig1862:15736..157831622929438.820956-CDS-H-paniculata_contig1862:15736..15783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 15737..15783 +
1691480861.706127-CDS-H-paniculata_contig1862:15736..157831691480861.706127-CDS-H-paniculata_contig1862:15736..15783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1862 15737..15783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1862.4606.1

>prot_H-paniculata_contig1862.4606.1 ID=prot_H-paniculata_contig1862.4606.1|Name=mRNA_H-paniculata_contig1862.4606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=253bp
MKYLDDPRLAYWSNFLESVELGDRLLSVRADAFSCKKAGDDKRFSKELER
HMKEKMATSPASYGTSPSFGELADVGVRRTLVDLICTMNASFPDYDFSGM
RPDHFQKEASVSFVRNKVNAGLAEVSVIHNKIFLESFWADLDEVMKLKDC
EVYSYSPDTEGDPFTEGCLWSFNHFFLNKSLKRILFLHCTTKSKLHMMED
GMRNSDGDSDADDDDEDGDADMDNDNEGEKYPGEIMSDMDMEPAGGDDDS
MT*
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mRNA from alignment at H-paniculata_contig1862:8704..16216+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1862.4606.1 ID=mRNA_H-paniculata_contig1862.4606.1|Name=mRNA_H-paniculata_contig1862.4606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7513bp|location=Sequence derived from alignment at H-paniculata_contig1862:8704..16216+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATTCAAACCCGCAATCGAGAAATGTCGTCACTTTGACTCACTCTTTTT TCTTTTTTCGTGCCCCTCTCTGCTCTTGACAAAAAGCACTCTCTCTTTTT TCTCGGGAATGAACTTGGGCCAAGACAAGCACACCAACACCTACAACCCT CCTACAACCAGTGTCGGCGCAGCCACGCCTCTCGCAAGTATCTATCTCAC TACAACCACGGCTCCCGCGGGCTTCAATCGCTACTTCAGGCGCTCCAATA CCTTTCGAAATAGTCGGAGTTAAAGACCCCCCCCATACCTTTTCTTGAGC TCTTCTTTCCCTCTGTGACCAAGTAAATAACCTGAATCCACGGAGCGGCA GGAGTTCGAAGTCCCGAGACCGAGTACTTCACTGACTAAACGGGGCACGA AGACAGGGGGAGTTTAGGGGATTTGGAGACAGAGGACCCAAGAAGGATAC AGCAACTGAACTTGGAGATTACCGCAGAAGGGGTGTGGATAGCTCGCTTT CGTGGAAACTATGAAATACCTGGACGATCCGAGGCTTGCCTACTGGAGCA ACTTCCTAGAGAGCGTGGAGCTGGGAGACAGATTGCTGTCTGTGCGCGCA GACGCATTCTCATGTGAGTTACACATACACACCATGACTCCATGCATATC AACGCATGTATAAATGTGCAGGGCACTCTTGTGGATGGAATTTTTGGTGG ATGAAGGTAGAGAGCAGCAGGGGGTTGGAGACGGTGGTGACGGCGGGCAG ATTTTACGCTAGAGGACGGATAGGGCTTCGAGATTGTTGGCAGTGTTTGT TGCTGCGAGGGACTTTTGTTCTGTCCCCAGGACGCGGAGATGCATATTCC CGAATTTCCAAGCGACAGATGTTCGGGCAATTCTTGTTTTGTGTTGTATT CACCAGTGAGTGAGTTGGTTCTGTAGAGGGGCTGGCAGCCTCTGGAGCAC AGTAATATACTGGCCGTTTAGACCCTAGGAACGCGGGGAATTGGATGAGA TGGCTTGTTGCAGAGACCGAAAAGTTTGTATTGAGTTGCCCAGGCGCAGT ATCTAGTAATGATTTCCGCGCACACCCCGATTACAACTGCTCCTCACAGT AGTATGTTCTCTTTGAGCAGAACATCATAGCTCGAACTCGGCACAAATGA ATTCTCTGTGAAGTAGAGCGACAGAGTCAGTGAGACGAGCAGAAAACTTA TGATAATTATCCTGGAACGATTTTCTTGGTCCTCCCTCAAACCCAACAAC CACAAAACACGAGTAATTCCCGTCAGTAATTGGATATCGGTGCAATTTGC ACGGTATTTACAGCACAGCCATCGAATATCCGCTACGATCGGATTCATCG GATTTTAATACCTATTCTTATACCGGGGAAACAATGGCCCATGAAAGGGA AGGCAGCCGTCGCTATTCAGACGACAGTTCAGTGTAGACAGTATACTGCA AAAGAGGACTGGCATTTAGTACGCATGGTTCTTCCCACGACGACTGTAGA GCTCGACATCAAATGGAAACAAGCACAAAATATTGTTGTAGACCCCTCCG ATCGCAGAATGTTTCATTCGAAATCATCATGGTGAATGGTGAACGCTCCT CCGACCGACAACCGTATCCTCCCAGCCCCGCCAACATCGTAACTTCCACC TGACGGAGTTCCGAATTCCCGCAGTCTACAGTAGAATATACCAGTAGTAG TCTGAGTCTAGATAATCCCCAACTCTGCCCAAGGCGGCGCCCTCTCCACT CCCGGGTGCTCTCGACGAAAGTGTCGGCGGACCTACTTCTTCAATGTCGG CGGAATTGGAGACATGCCTAAGCACTCCAGCCTCCATATTCGGCTGCGGC GGCCGCAGCGGCGAAGTTAGCAGAGCAAAAAACGGGCATGTGTATCCTTT TCATTCCCTTTTATATTTTACGGTACGAGTATAGATATGGCCTGGGCACT CACATGCCGTTCCGAGTTGCAGAGTAATGTGCGGAAGCAAGCCTTCCGAA ATATTGTGACGGAGTGTATTATATGATGTCTTCCTCTGAATTCCTCCTAA AGAGGGATCGATCGAGGTATCCTTTGATGAGCTGACGTGAAGTGCAGCAT GTCCGCAATACAGCACTCACACGTCTGTCTTCACTGCCATACTCTCTTCA GTAGGTTGAACGTCATCGCATACAGACAAGACACCTTACCCCACCGCACG CTACACACATGATTCATGTACGCTGGGAATTTCGTACTAGTGAGAGGGTT GCCCATAAGAGGCTCGGGGCGCCGTGATGGTTCAACTACCAGCGCGCGTA GTAGCCTGGAGCATCTGCATGTCACTCGTTGGTTTTGTCCATATCACACC ACACTACGAAATCCATTTATCCTAAAACGGCCTGGTTGGTATGCCCGGAT TCGGGGAGAAAGGGGATTGATTCGGTGTCGCAGTCAAGTTGGAAAATTGC TGCTATCCTACACGTATGCGTAGATGGAATCTAGTTTTTGCACGAAGCGC CATAGTTCATTGGGCACTGATCGTTTTGTTTGGTGTGGAGGAACTGGGCG CAGTGCCTCGGTCAATCCCACGTACGTATGACGGCACCGCGGTCGAGAGG ACCGAACAGTACCGGCAGTGCATTTTTTCAGGTGATTGCCGTTGAAGCGC TCGATTGCGGCAGCTGGGACGGTGCGTTTCATCAAGAGCTGTGTTCGCCC AAAGAAGACGATTTGCCGTGACCGAAAACGTGTGTTTGTTTTTTGTCACT CGATAAACCGTTTACTTGGATTGCCCAGCTGATTTGCTTATGATTCAAAC ACCTCAGCCGCCGATTAATCTCGTGCTTCAACCGCGAGCACCGGGCGAGA ATTACCGCCGGGTACCGTTTTGGTCCTCTCAATCGCCGTGCCGCCGCACG TGGTTCGTAGCACTTTAAATCTCAGGAAGGAACAAATAGGCAATATGGTT GATGTAACGGTGTGATTAGGTTTTGTTCCCTCCTGAGGGCATGCCGTAGT GATTTTTTCATAAAAAGGACCGTCTCTCACACACACACTTCAGGTAAAAA GGCGGGCGACGATAAACGTTTCTCTAAGGAGCTGGAACGACACATGAAGG AAAAAATGGCCACCTCTCCCGCATCTTACGGCACATCTCCGAGCTTCGGC GAGCTGGCGGATGTGGGCGTTCGGCGGACCCTGGTAGACCTAATCTGCAC CATGAATGCCTCTTTCCCGGACTACGACTTCAGCGGAATGCGGCCCGATC ACTTCCAGAAGGAAGCCAGCGTGAGCTTTGTACGAAACAAGGTGAGGGGG CGCAAAGAAAGGCAAGGAAGAGCACCAAAAAAGAAACCCAGGTGGATGAA TGGATGGATGGATGGATGGATGGATGGATGGATGGAATTTCAGAATAATG TAGTATTCAGTGGAAGATCCAATATTTGAGAGAAATACCACTCGGCTATT TGTTGAAGTGACAAACTTTTTCGAGTTCCGAGACTGCTGACTGTTAGGTA ATCACGTGCTTATTTAGTTTATTGTTTTTTTCATGTTTTATCTGCGGGAT GTTTGTTGTTTCGGAGCAGAAATCGAATCTATCTGACAACTAGTGTCACG CGCTGCAGCAGCATTTGCAGTGGGCAGAGATATGCCAACGCCCACAGTCA GTGCCTAACTGTTCTGTATCTGTATGCGCCTTTTGCATACTGGACTGTCT GTTTGACCAGCGACAACTCCCCGTCACTGCAGGTACGTATGACATGAGCG CCGTGTTCCGCTCTTTTTGACGTAGGCATTAGATACATTGGCGATTTTTT TATGTGGACAGGCTCTAAATAGATTGAATGATGATAATAATAATAATAAT AATAATAATAATAGAGCCTTGTGTGAAAGGGGTGTTCTGTCCTCCATGAA CTCTCGGAATTATTCCCTTTTATAGGGTGCTCTCTACATCACCCCCCCTT CATTAGGCTCTCTTCTATTTTGCAAATGCCTACTGGGGGTAACCGGTTTC GCAGGCTGGCGGTGAGGACATTCTCTCCTTTTTTGTTCACAATCTTCCCT CCTCTTGCGCGTGGGCCAACCACCTCCACATCGTCTTACTAGAAGTTTGT ATGGAAGTTTGTTCATGTTCCCCCATCATTTTTGCGGCCTGCTTAACTCG CAAACTTCTATTTTCCGTGATCATGGTCGGATTCGAATTCGCAACCTTCA GATCCCATCGTCAGGGATCCTACCGGCGACGCCATTATGAAAAGGGCGTT CTGTCCTCTACGAACTCTAGGGGGAATTATCCCCTTCTGTAGGGTACTCT CCACACGTGTGGTATTCGGTTCTTCTTGCTATCGCCGTTACTATGTAGTG CTACTGCTGCCGTTACTGTTATGTGCTCAGGTGAACGCTGGTTTGGCTGA GGTGTCAGTAATCCACAACAAGATCTTCCTGGAGAGCTTCTGGGCGGACC TCGACGAGGTCATGAAGCTGAAGGACTGTGAGGTTCGTGTAGTACCTTTA TTACGAGTGAACGTAAGCGAGCCACAGCGAGTGAGCCCAGCCTTTCCGTG TATGAAGAGCGAAACTTGAGTGTGAAATTGCTTCTACATGCGACGAGCGT AAGCGTGTTACGGTCAGCGCAGCGAGTCCGTGTGCGTGGGCTAGAGGTAC AGCGACGTCGTCGACTTAATGACGACCACGGGCGTAGCCGTGATCTGTCC ACTAGTACGATTAAATACGGTGACGTCGCCGTCTTCGATTCGGAATATAC TGTTCAAGTCTATACTCGAGTATTTCCTGAAAGAGGAGTCTTGTTGCGAG CGCAGCGAGCTGTTTTTGGGTGGGTCGAGGGGAGTCAAACGATGCACGGG CTTCAATCGCCATGGTCGTCCTCTACTACCGGTGCACGTGTATTTGGATA TAATTAAATTCACTCCAAAGTTTTGAAGTGCCACCGTAGAATAAGTTTAC ATTCGCTCACGTTCCTGACCATACAAGAACTCTTGGAAAAATTGCGTTGA ATTTGGTTTAATCCTGAGACCACGAACGAGTTTTCAGTTCATATTTTTTT GTTGTGATTGTTGTGATTGTTGTGTTCATCACCCCGATTATAGTACTACT TAATTTTCAAAAGTTTCCAGTAGTGAAGAAACACACCGCAGCGCAACTGG ATGTTCAATTTTTTTCATGCAAGTCGATGTACCTTCGTGACCTTTGTTTC TTTCCGTGTGTCTTTCTGTGTGTGTTTCGCTCTTTGTATAGGGTTGCGTG GTGTTGTATCTATGTATAGAGCTTTACGTGTATACTATGCCTTTTTTGTT GTGGTGGATGAATATGTACATATTTGGTCATATTCTAGAGCAGACCTGGC CCTGCCGACCCATGTGGCAGCGGGGCCGTCATGTGTTGCAAAAAAAAACG AACACGACGGAAGTCAAGTGTGTTACAAAGTATTGCATTAATTATGTTTT GTGGATTCTGTTTTGTGTTCCATGATTTTTTTTTCTGTTCACATTGGTTG TGGAACATGACATGACAGGTGTACTCATACTCGCCGGACACGGAGGGGGA TCCTTTCACTGAGGGCTGCCTTTGGTCGTTCAACCACTTCTTCCTCAACA AGAGCCTCAAGAGGATATTGTTTCTGCACTGCACCACGAAGAGGTCAGTA TATATTATTTTATTTCATGTTACATGCGTAGTGCTTACTTTGTTTTTGCT TGTTTCTAGCGTCCGTTTTTTTTTTTGTAAAGCACACGATGGTATCTGTT CTTGTGCTCTATGTATCCCTTTCGATTGTTCATTGGTGCTGGTGACTGTC TGATGACTTCGTTACACGCAGCTGTGAGATGCAAGCCACAAACCTCAGCA TGATGACGAGCACATGGAGCTATATTTTTAGAAGACCCCCCTGCTCATCC TAGCTGCTCTAAATTTGCCGATGCTTGTGTCAGGAGCTCATGGTTTCACA ACAAATCAGGGTTACTCTGCAAGGCTCGTGTTGCATTCGACACCAAGCTA CAGAAAATGAAACAGGAATATTCCTCCTGGCTGCAGAATAAACATAGATC CCTCAACTCTTGTATCTTTTAAACGAGCGGTTCCTAGAACGAGTCGATAG TCATTCTCCAGTGAACACGCACGCTGGACATTGTTCTGAAACCGTGAGCG CCCAACAATCAACAGTTGTAGACGAGATGAAGTACTACCTATATATCGAG ACAACTTGAAAGACAGCAGACGGGTCGACGGGGGGCAGAAAAAAGAGAAG AGTGTTTTCGTAAGTGCTCATTTCTGGGTTGTCCATGTTTATATCTACGC AAAGTACAATCGCGACTGATTGGATTGTTGCATAAGTTCCTTCTGGGTGA ATGTAGGAGTTAGATAGAGCACGTGGTGTTTTGTTTCCGGTGCGAAGTGA TGGGCGTTGAATCTTGGGATTGCGAAAAGGAGGCGATAGCGTCTCTAGGA GATAGAAATTGGCCTGAACAGGTGCGAGGGTCAAGGTAGATAGGGGGGGT AAAACAGGTTTGAACCACATTAAGCAACGTATCATAGAGCGATTGGTCAT CGAAAATCGCTTTGATGGGAGCAGAGCTCTGTCCTCCAGAAGACCCGCTG TCAACGGTCCAAAAAGTATGGCATGCAAAACATCAGTATTCCTCCTCCTC CCCCTTACCCCGTTGCCCTACATGTTATGCGAAGCAAACTGCATATGATG GAAGATGGTATGCGGAACTCTGACGGCGATAGTGATGCGGATGATGACGA TGAGGATGGAGACGCCGATATGGATAACGACAACGAGGGAGAGAAATATC CGGGCGAGATCATGAGCGGTGAGATTTTTTTGTGCAAAACGAGATATTTT TTTACCCGTGGCCGAATCGGACCGAGCCGAGTTCGTACGCTATCGCACGC CTCGTTCTCTCAGTACGACCCTGTTCACCCCCCCCCCCCCCGCGCGCCCC CGCCTTTGTTTCTAGATCCCAATTCCCAAAGCGCTTATTTTTCTATTTTT TCTTGACCGATCACCTTTTCTTTGTTTTTTCAGACATGGACATGGAGCCC GCTGGCGGAGATGACGATTCCATGACCTAGATTTTGACTCAGCCACAAAA GCGGGGTTTTGCTGTCGTTTGTATGTATTGGAAGAAGGCCCGGAGGAGAA GCCCCATCTCCGTATGCTGTGTGGCATTCATTCATGGAGATGGGGGGGGG GTGGACTGGGAAAGTGTGGACAGTGACATTTATTTGTACACTGGTAGATC TGACGAATATTCGTAAAGTGGAGGATGAAACATATTTGTAAAGTGGAGAA TGGCAAGTATTTGTACACTTTTTTCGATTTTTTTGGTCTGCCGCAACAAG CAAGCACTGCTAGCCCTTGTCTTGCGTGGAAATTGAGGATGACCTGTACG TACTTCATACCTGAAGTCTGCGGGCTGTATATATGTATTTTAGAGTACTA GAAGCGGCATGTAGAGGGGCTTGATTTTTTTCATATTTTTCGAAGAATAT ATTACGTTGGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1862:8704..16216+

>mRNA_H-paniculata_contig1862.4606.1 ID=mRNA_H-paniculata_contig1862.4606.1|Name=mRNA_H-paniculata_contig1862.4606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at H-paniculata_contig1862:8704..16216+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATACCTGGACGATCCGAGGCTTGCCTACTGGAGCAACTTCCTAGA
GAGCGTGGAGCTGGGAGACAGATTGCTGTCTGTGCGCGCAGACGCATTCT
CATATGAAATACCTGGACGATCCGAGGCTTGCCTACTGGAGCAACTTCCT
AGAGAGCGTGGAGCTGGGAGACAGATTGCTGTCTGTGCGCGCAGACGCAT
TCTCATGTAAAAAGGCGGGCGACGATAAACGTTTCTCTAAGGAGCTGGAA
CGACACATGAAGGAAAAAATGGCCACCTCTCCCGCATCTTACGGCACATC
TCCGAGCTTCGGCGAGCTGGCGGATGTGGGCGTTCGGCGGACCCTGGTAG
ACCTAATCTGCACCATGAATGCCTCTTTCCCGGACTACGACTTCAGCGGA
ATGCGGCCCGATCACTTCCAGAAGGAAGCCAGCGTGAGCTTTGTACGAAA
CAAGGTAAAAAGGCGGGCGACGATAAACGTTTCTCTAAGGAGCTGGAACG
ACACATGAAGGAAAAAATGGCCACCTCTCCCGCATCTTACGGCACATCTC
CGAGCTTCGGCGAGCTGGCGGATGTGGGCGTTCGGCGGACCCTGGTAGAC
CTAATCTGCACCATGAATGCCTCTTTCCCGGACTACGACTTCAGCGGAAT
GCGGCCCGATCACTTCCAGAAGGAAGCCAGCGTGAGCTTTGTACGAAACA
AGGTGAACGCTGGTTTGGCTGAGGTGTCAGTAATCCACAACAAGATCTTC
CTGGAGAGCTTCTGGGCGGACCTCGACGAGGTCATGAAGCTGAAGGACTG
TGAGGTGAACGCTGGTTTGGCTGAGGTGTCAGTAATCCACAACAAGATCT
TCCTGGAGAGCTTCTGGGCGGACCTCGACGAGGTCATGAAGCTGAAGGAC
TGTGAGGTGTACTCATACTCGCCGGACACGGAGGGGGATCCTTTCACTGA
GGGCTGCCTTTGGTCGTTCAACCACTTCTTCCTCAACAAGAGCCTCAAGA
GGATATTGTTTCTGCACTGCACCACGAAGAGGTGTACTCATACTCGCCGG
ACACGGAGGGGGATCCTTTCACTGAGGGCTGCCTTTGGTCGTTCAACCAC
TTCTTCCTCAACAAGAGCCTCAAGAGGATATTGTTTCTGCACTGCACCAC
GAAGAGCAAACTGCATATGATGGAAGATGGTATGCGGAACTCTGACGGCG
ATAGTGATGCGGATGATGACGATGAGGATGGAGACGCCGATATGGATAAC
GACAACGAGGGAGAGAAATATCCGGGCGAGATCATGAGCGCAAACTGCAT
ATGATGGAAGATGGTATGCGGAACTCTGACGGCGATAGTGATGCGGATGA
TGACGATGAGGATGGAGACGCCGATATGGATAACGACAACGAGGGAGAGA
AATATCCGGGCGAGATCATGAGCGACATGGACATGGAGCCCGCTGGCGGA
GATGACGATTCCATGACCTAGACATGGACATGGAGCCCGCTGGCGGAGAT
GACGATTCCATGACCTAG
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