mRNA_H-paniculata_contig18412.4521.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18412.4521.1
Unique NamemRNA_H-paniculata_contig18412.4521.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18412.4521.1 vs. uniprot
Match: UPI0020246435 (hypothetical protein n=2 Tax=Proteus mirabilis TaxID=584 RepID=UPI0020246435)

HSP 1 Score: 151 bits (381), Expect = 1.310e-38
Identity = 85/254 (33.46%), Postives = 146/254 (57.48%), Query Frame = 1
Query:   70 DPKNHRDAQASPEWEHWERAEEVEMQGVIDNGIWTQVERPNNKLIMSTMMLYKRIIDEDGKVEKYKCRLVAHGNRQIKGIHFQEASSPALVAVSTKITLSLAVIQDWELRHVDFELAYLQAPIDQEIFIEILVGYREFPGA--VRRLDKAIYG*VQAGRCWSMKVTADLTAKGFEQSHADPCLFLKIVDEKVVAVIIIYVDDLLISTKGSKIMDELLVDLRLNHKLTDLGDARYYLGCCHITRDRKKRQLEIDQ 825
            +P N+ +A  SP+   W  A + EM  + +N +WT V+ P+++  +    ++K+  D DG V  YK RLVA G RQ++GI + E  SP  +  S +I L++A   D+E+  +D + A+L   +++E+++    G+ +  GA  V +L ++IYG VQA R W+ +  + + A GF Q+  + C++ K+    V A +I+YVDD+L+     + +D +   L  +  + DLG+A Y LG   I RDR +R + + Q
Sbjct:    7 EPTNYEEAMVSPDSAKWLEAMKSEMGSMYENKVWTLVDLPDDRQAIENKWIFKKKTDADGNVTVYKARLVAKGFRQVQGIDYDETFSPVAMLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLEEELYMMQPEGFVDPKGANKVCKLQRSIYGLVQASRSWNKRFDSVIKAYGFIQTFGEACIYKKVSGSSV-AFLILYVDDILLIGNDIEFLDSIKGYLNKSFSMKDLGEAAYILGI-KIYRDRSRRLIGLSQ 258          
BLAST of mRNA_H-paniculata_contig18412.4521.1 vs. uniprot
Match: A0A446P200_TRITD (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A446P200_TRITD)

HSP 1 Score: 152 bits (384), Expect = 4.830e-38
Identity = 85/254 (33.46%), Postives = 146/254 (57.48%), Query Frame = 1
Query:   70 DPKNHRDAQASPEWEHWERAEEVEMQGVIDNGIWTQVERPNNKLIMSTMMLYKRIIDEDGKVEKYKCRLVAHGNRQIKGIHFQEASSPALVAVSTKITLSLAVIQDWELRHVDFELAYLQAPIDQEIFIEILVGYREFPGA--VRRLDKAIYG*VQAGRCWSMKVTADLTAKGFEQSHADPCLFLKIVDEKVVAVIIIYVDDLLISTKGSKIMDELLVDLRLNHKLTDLGDARYYLGCCHITRDRKKRQLEIDQ 825
            +P N+ +A  SP+   W  A + EM  + +N +WT V+ P+++  +    ++K+  D DG V  YK RLVA G RQ++G+ + E   P  +  S +I L++A   D+E+  +D + A+L   +++E+++  L G+ +  GA  V +L ++IYG VQA R W+ +  + + A GF Q+  + C++ K+    V A +I+YVDD+L+     K +D +   L  +  + DLG+A Y LG   I RDR +R + + Q
Sbjct:  805 EPTNYEEAMVSPDSAKWLEAMKSEMGSMYENKVWTLVDLPDDRQAIENKWIFKKKTDADGNVTVYKARLVAKGFRQVQGVDYDETFLPVAMLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLEEELYMMQLEGFVDPKGANKVCKLQRSIYGLVQASRSWNKRFDSVIKAFGFIQTFGEACIYKKVSGSSV-AFLILYVDDILLIGNDIKFLDSIKGYLNKSFSMKDLGEAAYILGI-KIYRDRSRRLIGLSQ 1056          
BLAST of mRNA_H-paniculata_contig18412.4521.1 vs. uniprot
Match: UPI0020240260 (hypothetical protein n=1 Tax=Proteus mirabilis TaxID=584 RepID=UPI0020240260)

HSP 1 Score: 144 bits (363), Expect = 2.170e-37
Identity = 80/254 (31.50%), Postives = 143/254 (56.30%), Query Frame = 1
Query:   70 DPKNHRDAQASPEWEHWERAEEVEMQGVIDNGIWTQVERPNNKLIMSTMMLYKRIIDEDGKVEKYKCRLVAHGNRQIKGIHFQEASSPALVAVSTKITLSLAVIQDWELRHVDFELAYLQAPIDQEIFIEILVGYREFPGA--VRRLDKAIYG*VQAGRCWSMKVTADLTAKGFEQSHADPCLFLKIVDEKVVAVIIIYVDDLLISTKGSKIMDELLVDLRLNHKLTDLGDARYYLGCCHITRDRKKRQLEIDQ 825
            +P N+ +A A P+ + W  A + E+  + +N +WT  + P+++  +    ++K+  D DG V  YK RLVA G RQ++G+ + E  SP     S +I L++A   D+E+  +D + A+L   + +E+++    G+ +   A  V +L ++IYG VQA R W+++    + A GF Q++ + C++ K+    V A +I+YVDD+L+     + ++ +   L     + DLG+A Y LG   I RDR +R + + Q
Sbjct:   15 EPSNYEEAMAGPDSDKWLEAMKSEIGSMYENEVWTLTDLPDDRRAIENKWIFKKKTDADGNVTIYKARLVAKGYRQVQGVDYDETFSPVAKLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLKEELYMMQPEGFVDPKNADKVCKLQRSIYGLVQASRSWNIRFDEMIKAFGFTQTYGEACVYKKVSGSSV-AFLILYVDDILLMGNDIEFLESIKAYLNKCFSMKDLGEAAYILGI-KIYRDRSRRLIGLSQ 266          
BLAST of mRNA_H-paniculata_contig18412.4521.1 vs. uniprot
Match: UPI002025A47D (hypothetical protein n=1 Tax=Proteus mirabilis TaxID=584 RepID=UPI002025A47D)

HSP 1 Score: 147 bits (371), Expect = 3.840e-37
Identity = 81/254 (31.89%), Postives = 144/254 (56.69%), Query Frame = 1
Query:   70 DPKNHRDAQASPEWEHWERAEEVEMQGVIDNGIWTQVERPNNKLIMSTMMLYKRIIDEDGKVEKYKCRLVAHGNRQIKGIHFQEASSPALVAVSTKITLSLAVIQDWELRHVDFELAYLQAPIDQEIFIEILVGYREFPGA--VRRLDKAIYG*VQAGRCWSMKVTADLTAKGFEQSHADPCLFLKIVDEKVVAVIIIYVDDLLISTKGSKIMDELLVDLRLNHKLTDLGDARYYLGCCHITRDRKKRQLEIDQ 825
            +P N+ +A A P+   W  A + E++ + +N +WT  + P+++  +    ++K+  D DG V  YK RLVA G RQ++G+ + E  SP     S +I L++A   D+E+  +D + A+L   + +E+++    G+ +   A  V +L ++IYG VQA R W+++    + A GF Q++ + C++ K+    V A +I+YVDD+L+     +++D +   L     + DLG+A Y LG   I RDR +R + + Q
Sbjct:   15 EPSNYEEAMAGPDSNKWLEAMKSEIESMYENKVWTLTDLPDDRRAIENKWIFKKKTDADGNVTIYKARLVAKGYRQVQGVDYDETFSPVAKLKSVRIMLAIAAYYDYEIWQMDVKTAFLNGHLKEELYMMQPEGFVDPKNANKVCKLQRSIYGLVQASRSWNIRFDEMIKAFGFMQTYGEACVYKKVSGSSV-AFLILYVDDILLMGNDIELLDSIKAYLNKCFSMKDLGEAAYILGI-KIYRDRSRRLIGLSQ 266          
BLAST of mRNA_H-paniculata_contig18412.4521.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 148 bits (374), Expect = 9.240e-37
Identity = 90/253 (35.57%), Postives = 142/253 (56.13%), Query Frame = 1
Query:   70 DPKNHRDAQASPEWEHWERAEEVEMQGVIDNGIWTQVERPNNKLIMSTMMLYKRIIDEDGKVEKYKCRLVAHGNRQIKGIHFQEASSPALVAVSTKITLSLAVIQDWELRHVDFELAYLQAPIDQEIFIEILVGYREFPGAVRRLDKAIYG*VQAGRCWSMKVTADLTAK-GFEQSHADPCLFLKIVDEKVVAVIIIYVDDLLISTKGSKIMDELLVDLRLNHKLTDLGDARYYLGCCHITRDRKKRQLEIDQ 825
            +P+   +AQA+PEW  W+RA + E+  +   G +   + P  +  +    +Y+   D DG++ +YK RLVA G  Q  G+ + E  +P +   S ++ L++A  ++ EL   D   AYL A +D+EI++    GY E    + RL KA+YG  QAG  W+  +   LTA  GF++ ++DPC++LK    K + ++ ++VDD+        +MD L   L  ++K+TDLG  R  LG   I+RDRKKR L I Q
Sbjct:   14 EPRTLSEAQAAPEWPEWKRAMDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLK-KSPKGLTIVGMHVDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGF-EISRDRKKRTLSIKQ 264          
BLAST of mRNA_H-paniculata_contig18412.4521.1 vs. uniprot
Match: A0A8I7BEN6_HORVV (Uncharacterized protein n=26 Tax=cellular organisms TaxID=131567 RepID=A0A8I7BEN6_HORVV)

HSP 1 Score: 147 bits (371), Expect = 2.610e-36
Identity = 81/254 (31.89%), Postives = 145/254 (57.09%), Query Frame = 1
Query:   70 DPKNHRDAQASPEWEHWERAEEVEMQGVIDNGIWTQVERPNNKLIMSTMMLYKRIIDEDGKVEKYKCRLVAHGNRQIKGIHFQEASSPALVAVSTKITLSLAVIQDWELRHVDFELAYLQAPIDQEIFIEILVGYREFPGA--VRRLDKAIYG*VQAGRCWSMKVTADLTAKGFEQSHADPCLFLKIVDEKVVAVIIIYVDDLLISTKGSKIMDELLVDLRLNHKLTDLGDARYYLGCCHITRDRKKRQLEIDQ 825
            +P N+ +A A P+   W  A + E+  + +N +WT V+ P+ +  +    ++K+  D +G V  YK RLVA G RQI+G+ ++E  SP     S +I L++A   D+E+  +D + A+L   + +E+++    G+ +  GA  V +L ++IYG VQA R W+++    + A GF Q + + C++ K+    V A +++YVDD+L+     ++++ +   L  +  + DLG+A Y LG   I RDR +R + + Q
Sbjct:  804 EPSNYEEAMAGPDSNKWLEAMKSEIGSMYENKVWTLVDLPDERQAIENKWIFKKKTDANGNVTVYKARLVAKGFRQIQGVDYEETFSPVAKLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGNLKEELYMMQPEGFVDPKGANKVCKLQRSIYGLVQASRSWNIRFNEVIKAFGFIQVYGEACMYKKVSGSSV-AFLVLYVDDILLMGNDIEMLESIKAYLNKSFSMKDLGEAAYILGI-KIYRDRSRRLIGLSQ 1055          
BLAST of mRNA_H-paniculata_contig18412.4521.1 vs. uniprot
Match: UPI002025788D (hypothetical protein n=2 Tax=Proteus mirabilis TaxID=584 RepID=UPI002025788D)

HSP 1 Score: 146 bits (369), Expect = 2.920e-36
Identity = 81/254 (31.89%), Postives = 144/254 (56.69%), Query Frame = 1
Query:   70 DPKNHRDAQASPEWEHWERAEEVEMQGVIDNGIWTQVERPNNKLIMSTMMLYKRIIDEDGKVEKYKCRLVAHGNRQIKGIHFQEASSPALVAVSTKITLSLAVIQDWELRHVDFELAYLQAPIDQEIFIEILVGYREFPGA--VRRLDKAIYG*VQAGRCWSMKVTADLTAKGFEQSHADPCLFLKIVDEKVVAVIIIYVDDLLISTKGSKIMDELLVDLRLNHKLTDLGDARYYLGCCHITRDRKKRQLEIDQ 825
            +P N+ +A A P+ + W  A + E+  + +N +WT  + P+++  +    ++K+  D DG V  YK RLVA G RQ++G+ + E  SP     S +I L++A   D+E+  +D + A+L   + +E+++    G+ +   A  V +L ++IYG VQA R W+++    + A GF Q++ + C++ K+    V A +I+YVDD+L+     +++D +   L     + DLG+A Y LG   I RDR +R + + Q
Sbjct:  191 EPSNYEEAMAGPDSDKWLEAMKSEIGSMYENEVWTLTDLPDDRRAIENKWIFKKKTDADGNVTIYKARLVAKGYRQVQGVDYDETFSPVAKLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLKEELYMMQPEGFVDPKNADKVCKLQRSIYGLVQASRSWNIRFDEMIKAFGFTQTYGEACVYKKVSGSSV-AFLILYVDDILLMGNDIELLDSIKAYLNKCFSMKDLGEAAYILGI-KIYRDRSRRLIGLSQ 442          
BLAST of mRNA_H-paniculata_contig18412.4521.1 vs. uniprot
Match: A0A0V0IWV1_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0IWV1_SOLCH)

HSP 1 Score: 140 bits (352), Expect = 2.170e-35
Identity = 83/236 (35.17%), Postives = 135/236 (57.20%), Query Frame = 1
Query:   70 DPKNHRDAQASPEWEHWERAEEVEMQGVIDNGIWTQVERPNNKLIMSTMMLYKRIIDEDGKVEKYKCRLVAHGNRQIKGIHFQEASSPALVAVSTKITLSLAVIQDWELRHVDFELAYLQAPIDQEIFIEILVGYR-EFPGAVRRLDKAIYG*VQAGRCWSMKVTADLTAKGFEQSHADPCLFLKIVDEKVVAVIIIYVDDLLISTKGSKIMDELLVDLRLNHKLTDLGDARYYLG 774
            +P   ++A +  EW    RA + E+  +  N  WT V+ P  K  + +  +YK  +  +G+VE+YK RLVA G  Q +G+ + E  SP    V+ + T+ +   QDW L  +D   A+LQ  + +++++E+  G++ +    V +L K++YG  QA R W+ K+T  L + G+ QS  D  LF K  D + +AVI+IYVDDLLI+   +K++ EL   L    K+ DLG  +++LG
Sbjct:   12 EPATFKEASSCKEWV---RAMQDEVNALEQNATWTVVDLPPGKKAIGSKWVYKVELQANGQVERYKARLVAKGYNQQEGLDYHETFSPVAKMVTVRTTIGVVASQDWPLYQMDVHNAFLQGDLLEDVYMEMPQGFQTQGENKVCKLLKSLYGLKQASRQWNQKLTEALLSIGYSQSSYDYSLFTKR-DGEDIAVILIYVDDLLITGNSNKLIQELKDSLHSRFKMKDLGVLKFFLG 243          
BLAST of mRNA_H-paniculata_contig18412.4521.1 vs. uniprot
Match: UPI00202469D1 (DDE-type integrase/transposase/recombinase n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=UPI00202469D1)

HSP 1 Score: 144 bits (363), Expect = 2.850e-35
Identity = 80/254 (31.50%), Postives = 143/254 (56.30%), Query Frame = 1
Query:   70 DPKNHRDAQASPEWEHWERAEEVEMQGVIDNGIWTQVERPNNKLIMSTMMLYKRIIDEDGKVEKYKCRLVAHGNRQIKGIHFQEASSPALVAVSTKITLSLAVIQDWELRHVDFELAYLQAPIDQEIFIEILVGYREFPGA--VRRLDKAIYG*VQAGRCWSMKVTADLTAKGFEQSHADPCLFLKIVDEKVVAVIIIYVDDLLISTKGSKIMDELLVDLRLNHKLTDLGDARYYLGCCHITRDRKKRQLEIDQ 825
            +P N+ +A A P+ + W  A + E+  + +N +WT  + P+++  +    ++K+  D DG V  YK RLVA G RQ++G+ + E  SP     S +I L++A   D+E+  +D + A+L   + +E+++    G+ +   A  V +L ++IYG VQA R W+++    + A GF Q++ + C++ K+    V A +I+YVDD+L+     + ++ +   L     + DLG+A Y LG   I RDR +R + + Q
Sbjct:  474 EPSNYEEAMAGPDSDKWLEAMKSEIGSMYENEVWTLTDLPDDRRAIENKWIFKKKTDADGNVTIYKARLVAKGYRQVQGVDYDETFSPVAKLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLKEELYMMQPEGFVDPKNADKVCKLQRSIYGLVQASRSWNIRFDEMIKAFGFTQTYGEACVYKKVSGSSV-AFLILYVDDILLMGNDIEFLESIKAYLNKCFSMKDLGEAAYILGI-KIYRDRSRRLIGLSQ 725          
BLAST of mRNA_H-paniculata_contig18412.4521.1 vs. uniprot
Match: G7E3S6_MIXOS (Integrase catalytic domain-containing protein n=1 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7E3S6_MIXOS)

HSP 1 Score: 142 bits (359), Expect = 1.020e-34
Identity = 85/254 (33.46%), Postives = 147/254 (57.87%), Query Frame = 1
Query:   73 PKNHRDAQASPEWEHWERAEEVEMQGVIDNGIWTQVERPNNKLIMSTMMLYKRIIDEDGKVEKYKCRLVAHGNRQIKGIHFQEASSPALVAVSTKITLSLAVIQDWELRHVDFELAYLQAPIDQEIFIEILVGYREFPGA---VRRLDKAIYG*VQAGRCWSMKVTADLTAKGFEQSHADPCLFLKIVDEKVVAVIIIYVDDLLISTKGSKIMDELLVDLRLNHKLTDLGDARYYLGCCHITRDRKKRQLEIDQ 825
            P+N ++A ASP+ ++W+ A + E + +  N +W  VE P  +  + T+ ++   +DE G+V +YK RLVA G RQI G+ + E S+      + +  L+LA  +D+EL   D   A+L +P++++I+I+    Y   PG    V +L KAIYG  QAG  W   ++  L A G +Q+ ADP ++ K + + ++ V+I+YVDDLLI++    +  EL+  L    +   +G+ + +LG   ++R+R  R + + Q
Sbjct:  764 PRNVKEALASPQADYWKDAMDAEYESMAANKVWELVELPPGRKAIDTLFVFATKVDEKGEVYRYKARLVAKGYRQIPGVDYFETSASVASLPAVRTVLALAASRDYELIQADITSAFLNSPLEEDIYIKQQADYT-VPGQETLVCKLKKAIYGLKQAGLAWVNTLSERLIAFGLDQTEADPNIYTKPIGDDLL-VLIVYVDDLLIASPTQSLAWELVDFLAQTFQFKRIGEPKKFLGI-ELSRNRAARTISLRQ 1014          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18412.4521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00202464351.310e-3833.46hypothetical protein n=2 Tax=Proteus mirabilis Tax... [more]
A0A446P200_TRITD4.830e-3833.46Uncharacterized protein n=2 Tax=cellular organisms... [more]
UPI00202402602.170e-3731.50hypothetical protein n=1 Tax=Proteus mirabilis Tax... [more]
UPI002025A47D3.840e-3731.89hypothetical protein n=1 Tax=Proteus mirabilis Tax... [more]
A0A1M2V3W8_TRAPU9.240e-3735.57Retrovirus-related Pol polyprotein from transposon... [more]
A0A8I7BEN6_HORVV2.610e-3631.89Uncharacterized protein n=26 Tax=cellular organism... [more]
UPI002025788D2.920e-3631.89hypothetical protein n=2 Tax=Proteus mirabilis Tax... [more]
A0A0V0IWV1_SOLCH2.170e-3535.17Putative ovule protein n=1 Tax=Solanum chacoense T... [more]
UPI00202469D12.850e-3531.50DDE-type integrase/transposase/recombinase n=3 Tax... [more]
G7E3S6_MIXOS1.020e-3433.46Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18412contigH-paniculata_contig18412:4115..4939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score104.8
Seed ortholog evalue4.2e-20
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size825
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18412.4521.1prot_H-paniculata_contig18412.4521.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18412 4127..4639 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929428.2807207-UTR-H-paniculata_contig18412:4114..41261622929428.2807207-UTR-H-paniculata_contig18412:4114..4126Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18412 4115..4126 +
1691480857.1314313-UTR-H-paniculata_contig18412:4114..41261691480857.1314313-UTR-H-paniculata_contig18412:4114..4126Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18412 4115..4126 +
1622929428.3095887-UTR-H-paniculata_contig18412:4639..49391622929428.3095887-UTR-H-paniculata_contig18412:4639..4939Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18412 4640..4939 +
1691480857.1492913-UTR-H-paniculata_contig18412:4639..49391691480857.1492913-UTR-H-paniculata_contig18412:4639..4939Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18412 4640..4939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929428.2929728-CDS-H-paniculata_contig18412:4126..46391622929428.2929728-CDS-H-paniculata_contig18412:4126..4639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18412 4127..4639 +
1691480857.1414332-CDS-H-paniculata_contig18412:4126..46391691480857.1414332-CDS-H-paniculata_contig18412:4126..4639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18412 4127..4639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18412.4521.1

>prot_H-paniculata_contig18412.4521.1 ID=prot_H-paniculata_contig18412.4521.1|Name=mRNA_H-paniculata_contig18412.4521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
MAMQVALAMPEELRSDLPVDPKNHRDAQASPEWEHWERAEEVEMQGVIDN
GIWTQVERPNNKLIMSTMMLYKRIIDEDGKVEKYKCRLVAHGNRQIKGIH
FQEASSPALVAVSTKITLSLAVIQDWELRHVDFELAYLQAPIDQEIFIEI
LVGYREFPGAVRRLDKAIYG*
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mRNA from alignment at H-paniculata_contig18412:4115..4939+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18412.4521.1 ID=mRNA_H-paniculata_contig18412.4521.1|Name=mRNA_H-paniculata_contig18412.4521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=825bp|location=Sequence derived from alignment at H-paniculata_contig18412:4115..4939+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGGCGACATCATGGCGATGCAGGTTGCACTGGCGATGCCCGAAGAACT GAGGAGCGACCTCCCCGTGGACCCCAAGAATCACCGGGACGCGCAGGCGT CGCCTGAGTGGGAGCACTGGGAAAGAGCGGAGGAGGTCGAGATGCAAGGC GTCATCGACAACGGGATTTGGACGCAGGTGGAGCGCCCGAATAACAAGCT GATCATGAGCACGATGATGCTCTACAAAAGGATAATCGACGAGGACGGTA AAGTGGAGAAATACAAGTGCCGCCTGGTCGCCCACGGGAACCGCCAGATC AAGGGCATCCACTTCCAGGAAGCTTCGTCCCCTGCACTCGTAGCAGTCAG CACAAAAATAACGTTGTCGCTTGCGGTAATCCAGGATTGGGAGCTTCGGC ACGTCGACTTTGAACTAGCGTATCTGCAGGCGCCCATCGACCAAGAGATT TTCATCGAAATTCTCGTAGGATACCGGGAGTTCCCAGGAGCGGTGCGGCG CCTCGACAAGGCAATCTACGGATAGGTGCAAGCCGGCAGATGCTGGAGTA TGAAGGTTACCGCGGACCTCACGGCGAAAGGGTTCGAGCAATCGCACGCC GATCCGTGCTTGTTCCTCAAGATCGTGGATGAGAAGGTGGTCGCAGTGAT CATCATATACGTGGACGACCTTCTGATCAGCACCAAGGGATCCAAAATCA TGGATGAGTTGCTGGTGGACTTGCGCTTGAACCACAAGCTCACAGACTTG GGAGATGCAAGGTACTATTTAGGGTGCTGCCACATAACCCGCGATAGGAA AAAGAGGCAGCTCGAGATCGACCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig18412:4115..4939+

>mRNA_H-paniculata_contig18412.4521.1 ID=mRNA_H-paniculata_contig18412.4521.1|Name=mRNA_H-paniculata_contig18412.4521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig18412:4115..4939+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGATGCAGGTTGCACTGGCGATGCCCGAAGAACTGAGGAGCGACCT
CCCCGTGGACCCCAAGAATCACCGGGACGCGCAGGCGTCGCCTGAGTGGG
AGCACTGGGAAAGAGCGGAGGAGGTCGAGATGCAAGGCGTCATCGACAAC
GGGATTTGGACGCAGGTGGAGCGCCCGAATAACAAGCTGATCATGAGCAC
GATGATGCTCTACAAAAGGATAATCGACGAGGACGGTAAAGTGGAGAAAT
ACAAGTGCCGCCTGGTCGCCCACGGGAACCGCCAGATCAAGGGCATCCAC
TTCCAGGAAGCTTCGTCCCCTGCACTCGTAGCAGTCAGCACAAAAATAAC
GTTGTCGCTTGCGGTAATCCAGGATTGGGAGCTTCGGCACGTCGACTTTG
AACTAGCGTATCTGCAGGCGCCCATCGACCAAGAGATTTTCATCGAAATT
CTCGTAGGATACCGGGAGTTCCCAGGAGCGGTGCGGCGCCTCGACAAGGC
AATCTACGGATAGATGGCGATGCAGGTTGCACTGGCGATGCCCGAAGAAC
TGAGGAGCGACCTCCCCGTGGACCCCAAGAATCACCGGGACGCGCAGGCG
TCGCCTGAGTGGGAGCACTGGGAAAGAGCGGAGGAGGTCGAGATGCAAGG
CGTCATCGACAACGGGATTTGGACGCAGGTGGAGCGCCCGAATAACAAGC
TGATCATGAGCACGATGATGCTCTACAAAAGGATAATCGACGAGGACGGT
AAAGTGGAGAAATACAAGTGCCGCCTGGTCGCCCACGGGAACCGCCAGAT
CAAGGGCATCCACTTCCAGGAAGCTTCGTCCCCTGCACTCGTAGCAGTCA
GCACAAAAATAACGTTGTCGCTTGCGGTAATCCAGGATTGGGAGCTTCGG
CACGTCGACTTTGAACTAGCGTATCTGCAGGCGCCCATCGACCAAGAGAT
TTTCATCGAAATTCTCGTAGGATACCGGGAGTTCCCAGGAGCGGTGCGGC
GCCTCGACAAGGCAATCTACGGATAG
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