mRNA_H-paniculata_contig18402.4513.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18402.4513.1
Unique NamemRNA_H-paniculata_contig18402.4513.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18402.4513.1 vs. uniprot
Match: B1N8E7_9PHAE (Glutathione S-transferase 2 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E7_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 3.870e-41
Identity = 69/102 (67.65%), Postives = 85/102 (83.33%), Query Frame = 1
Query:    1 LYPHDPVEAAFADAAVDSVSDMHLKLLPTIAEKDMTKKLEMRKDLVNDFLPKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTI 306
            LYP D +EAA ADAAVDSV D H+KL PT+ +KD  +++EMR++LV DFLP WL NLEK+L  AGG YFAGG+LSIGDIAVVAR++W+KEG  SLDGIP++I
Sbjct:   80 LYPEDALEAALADAAVDSVGDNHMKLAPTVQQKDKVQQMEMRQNLVRDFLPTWLGNLEKALANAGGTYFAGGKLSIGDIAVVARLVWLKEG--SLDGIPTSI 179          
BLAST of mRNA_H-paniculata_contig18402.4513.1 vs. uniprot
Match: B1N8E6_9PHAE (Glutathione S-transferase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E6_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.360e-37
Identity = 64/102 (62.75%), Postives = 81/102 (79.41%), Query Frame = 1
Query:    1 LYPHDPVEAAFADAAVDSVSDMHLKLLPTIAEKDMTKKLEMRKDLVNDFLPKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTI 306
            LY  DP+EAAFADAA+++V DMH  L PT+ E+D  KKLEMRK + +++LP WL NLE++L+ AGG YFAGG+LSIGDI VVAR+ W+K G  +LDGIP TI
Sbjct:   78 LYSEDPIEAAFADAAMEAVIDMHFHLRPTVHEQDPAKKLEMRKAMTDNYLPTWLGNLERALKAAGGSYFAGGKLSIGDIYVVARLNWLKRG--ALDGIPDTI 177          
BLAST of mRNA_H-paniculata_contig18402.4513.1 vs. uniprot
Match: A0A6H5JAZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ7_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 5.120e-35
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    1 LYPHDPVEAAFADAAVDSVSDMHLKLLPTIAEKDMTKKLEMRKDLVNDFLPKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTI 306
            LYP+DP++AAFAD+AVD+VSD+H  +   I EKD   K ++RKDLV   LP WL N EK+L+LAGG YFAG +LSIGDIAVVAR+ W+ +GT   +G+PST+
Sbjct:   27 LYPNDPIQAAFADSAVDAVSDIHGYMRGIIFEKDADAKAQLRKDLVETLLPPWLTNSEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGT--FEGVPSTL 126          
BLAST of mRNA_H-paniculata_contig18402.4513.1 vs. uniprot
Match: D8LHF0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF0_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 5.180e-35
Identity = 62/102 (60.78%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 LYPHDPVEAAFADAAVDSVSDMHLKLLPTIAEKDMTKKLEMRKDLVNDFLPKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTI 306
            LYP DP++AAFAD+A D+VSD+   +   I EKD  KK ++RKDLV   LP WLANLEK+L+LAGG+YFAG +LSIGDIAVVAR+ W+ +GT   +G+PST+
Sbjct:   77 LYPTDPIQAAFADSATDAVSDIQGYMRGIIFEKDADKKAQLRKDLVETLLPTWLANLEKALKLAGGEYFAGDKLSIGDIAVVARLNWLTDGT--FEGVPSTL 176          
BLAST of mRNA_H-paniculata_contig18402.4513.1 vs. uniprot
Match: D8LK37_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK37_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 7.850e-32
Identity = 59/102 (57.84%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    1 LYPHDPVEAAFADAAVDSVSDMHLKLLPTIAEKDMTKKLEMRKDLVNDFLPKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTI 306
            LYP DP++AAFAD+A D+V+DMH  +     EKD   K ++ KDLV   LP WLANLEK+L+LAGG YFAG +LSIGDIAVVAR+ W+ +GT   + +PS I
Sbjct:   77 LYPTDPIQAAFADSATDAVNDMHGHMRAIFFEKDADAKTQLLKDLVEKLLPPWLANLEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFD-ESVPSAI 177          
BLAST of mRNA_H-paniculata_contig18402.4513.1 vs. uniprot
Match: B1N8E8_9PHAE (Glutathione S-transferase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E8_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.200e-18
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 1
Query:    1 LYPHDPVEAAFADAAVDSVSDMHLKLLPTIAEKDMTKKLEMRKDLVNDFLPKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTI 306
            L+P D +EAA  DA +D+  D ++ + P   EKD  K+LEM  DL  +++PKWLAN+EK L    G YFA  ++S+ DI +  R+  +++G  + +G+P+TI
Sbjct:   78 LHPSDDLEAAKCDAVLDAAVDFYINVRPAYTEKDQAKQLEMFGDLAVNYIPKWLANVEKQLAATEGIYFAE-KMSVADIMITTRLKTLRDG--NYNGVPTTI 176          
BLAST of mRNA_H-paniculata_contig18402.4513.1 vs. uniprot
Match: A0A061SAH2_9CHLO (Prostaglandin-H2 D-isomerase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SAH2_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 6.540e-18
Identity = 47/103 (45.63%), Postives = 59/103 (57.28%), Query Frame = 1
Query:    1 LYPHDPVEAAFADAAVDSVSDMHLKLLPTIAEKDMTKKLEMRKDLVNDFLPKWLANLEKSLELAGGD-YFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTI 306
            LYP DPVEA   D  VD++ DM L + PT+ E+D  KK+EMRK L  + LPKWL    K +E  G   Y  G  L+I D+ +   I  +  G   LDGIP TI
Sbjct:   76 LYPTDPVEALAVDQIVDALEDMFLHVKPTVQEQDEKKKMEMRKVLAEETLPKWLGYFNKHIEENGSSGYIVGDSLTIADLKLYTLIGLLTSGM--LDGIPKTI 176          
BLAST of mRNA_H-paniculata_contig18402.4513.1 vs. uniprot
Match: F2U7D3_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U7D3_SALR5)

HSP 1 Score: 79.7 bits (195), Expect = 1.790e-15
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 1
Query:    1 LYPHDPVEAAFADAAVDSVSDMHLKLLPTIAEKDMTKKLEMRKDLVNDFLPKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTI 306
            LYP D +EAA  D  +  + D++  ++PTI E+DM +KL MR++L  D LP+WLA L  + + + G      R+SI D+     I W+  G   +DGIP TI
Sbjct:  103 LYPEDHMEAARVDEVIGLIEDINWLIIPTIKERDMERKLAMRRELATDLLPRWLAVL--NCKFSNGYVLGPDRISIADLTAFTLIGWLTMGV--MDGIPKTI 200          
BLAST of mRNA_H-paniculata_contig18402.4513.1 vs. uniprot
Match: A0A2E1RBK4_9DELT (Uncharacterized protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E1RBK4_9DELT)

HSP 1 Score: 66.2 bits (160), Expect = 4.250e-11
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 1
Query:    1 LYPHDP-VEAAFADAAVDSVSDMHLKLLPTIAEKDMTKKLEMRKDLVNDFLPKWLANLEKSLELAGGD-YFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTI 306
            LYP D    AA  D  +D  +D+ +++ P+I E D   + EMRK+L    LP+WL  LEK LE  G   +F G  +S+ D+AV     W+  G   +DGI + +
Sbjct:   79 LYPSDDNYAAAKVDEVIDLCTDITIQMRPSIRETDPKLRTEMRKELSETILPRWLGFLEKLLEDNGDTGFFVGSSISVADLAVWRLCAWISGGI--IDGISTNL 180          
BLAST of mRNA_H-paniculata_contig18402.4513.1 vs. uniprot
Match: A0A534ZXF1_9DELT (Glutathione S-transferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534ZXF1_9DELT)

HSP 1 Score: 65.9 bits (159), Expect = 5.870e-11
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = 1
Query:    1 LYPHDPVEAAFADAAVDSVSDMHLKLLPTIAEKDMTKKLEMRKDLVNDFLPKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTI 306
            LYP DP +AA  D A+++V D+  ++  T +  +  KK + R+ L +  +  +L  L++ LE  GG YFAGGRLS+ D+ V   I  ++ G   LD IP+ +
Sbjct:   78 LYPSDPWQAALCDEAMEAVEDITSEVSATFSLPEDQKKAQ-RQALADGPITFFLTRLQQRLEAGGGQYFAGGRLSVADLKVFVWIRHLRSG--KLDYIPADL 176          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18402.4513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
B1N8E7_9PHAE3.870e-4167.65Glutathione S-transferase 2 n=1 Tax=Laminaria digi... [more]
B1N8E6_9PHAE1.360e-3762.75Glutathione S-transferase 1 n=1 Tax=Laminaria digi... [more]
A0A6H5JAZ7_9PHAE5.120e-3559.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHF0_ECTSI5.180e-3560.78Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D8LK37_ECTSI7.850e-3257.84Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
B1N8E8_9PHAE1.200e-1841.18Glutathione S-transferase 3 n=1 Tax=Laminaria digi... [more]
A0A061SAH2_9CHLO6.540e-1845.63Prostaglandin-H2 D-isomerase n=1 Tax=Tetraselmis s... [more]
F2U7D3_SALR51.790e-1540.20Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A2E1RBK4_9DELT4.250e-1137.50Uncharacterized protein n=2 Tax=Proteobacteria Tax... [more]
A0A534ZXF1_9DELT5.870e-1137.25Glutathione S-transferase n=1 Tax=Deltaproteobacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18402contigH-paniculata_contig18402:3449..5206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score79.7
Seed ortholog evalue8.6e-13
Seed eggNOG ortholog946362.XP_004994854.1
KEGG rclassRC00004,RC00069,RC00672,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K04097
KEGG ReactionR02266,R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409
KEGG Pathwayko00480,ko00590,ko00980,ko00982,ko01100,ko05204,map00480,map00590,map00980,map00982,map01100,map05204
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glutathione S-transferase, C-terminal domain
EggNOG OGs3A52M@33154,KOG1695@1,KOG1695@2759
EC2.5.1.18,5.3.99.2
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons4
Model size306
Cds size306
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18402.4513.1prot_H-paniculata_contig18402.4513.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18402 3449..5206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929427.4006562-CDS-H-paniculata_contig18402:3448..35621622929427.4006562-CDS-H-paniculata_contig18402:3448..3562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18402 3449..3562 +
1691480856.8140028-CDS-H-paniculata_contig18402:3448..35621691480856.8140028-CDS-H-paniculata_contig18402:3448..3562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18402 3449..3562 +
1622929427.4210377-CDS-H-paniculata_contig18402:3960..40011622929427.4210377-CDS-H-paniculata_contig18402:3960..4001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18402 3961..4001 +
1691480856.8259068-CDS-H-paniculata_contig18402:3960..40011691480856.8259068-CDS-H-paniculata_contig18402:3960..4001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18402 3961..4001 +
1622929427.4387329-CDS-H-paniculata_contig18402:4376..44401622929427.4387329-CDS-H-paniculata_contig18402:4376..4440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18402 4377..4440 +
1691480856.83457-CDS-H-paniculata_contig18402:4376..44401691480856.83457-CDS-H-paniculata_contig18402:4376..4440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18402 4377..4440 +
1622929427.4574237-CDS-H-paniculata_contig18402:5119..52061622929427.4574237-CDS-H-paniculata_contig18402:5119..5206Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18402 5120..5206 +
1691480856.8437402-CDS-H-paniculata_contig18402:5119..52061691480856.8437402-CDS-H-paniculata_contig18402:5119..5206Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18402 5120..5206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18402.4513.1

>prot_H-paniculata_contig18402.4513.1 ID=prot_H-paniculata_contig18402.4513.1|Name=mRNA_H-paniculata_contig18402.4513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
LYPHDPVEAAFADAAVDSVSDMHLKLLPTIAEKDMTKKLEMRKDLVNDFL
PKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPS
TI
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mRNA from alignment at H-paniculata_contig18402:3449..5206+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18402.4513.1 ID=mRNA_H-paniculata_contig18402.4513.1|Name=mRNA_H-paniculata_contig18402.4513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1758bp|location=Sequence derived from alignment at H-paniculata_contig18402:3449..5206+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTACCCCCACGACCCCGTCGAAGCGGCCTTCGCCGATGCTGCGGTCGA CTCGGTGTCAGACATGCACCTTAAACTCCTTCCCACCATTGCGGAGAAGG ACATGACCAAGAAGGTACATTCGCGCAGCAATCTGCAATTTTACCATTGT GAACCAAATTTGATCACCTCCTAAGAATGGGTTATATACAGCGTACACAC ATTTAGTCGCCACCTGTTCCTGATAGGTTTTGGTGGAAGAAGTGTAATGC AACTGAAGTTTAAGGTCGGCTGCTGCATAACCTCAACACGGATAGAGTGG AGCTGTTATATGAGCTTCAGAGCTCTAACCTTCCCCCGCCTCTGTCACCT GTCCGCATCGCTTTTATCCGTTCCAAATGAGTAACTTGCATTTCAGTGTT GTGCGTACGTGCTGTGCTTTTATGTTTCGTTGTGCTGACCCCAAAATCGT CGTTTCACTGTTTCGTGCTGTCTATCTCGTTGTGTGTTGACTGCTCCTAC CGTGGACCTCAGCTTGAAATGCGCAAGGATTTGGTGAACGACTTCCTTCC AAAGTGAGTGAAGAAAATGTTCTCATGCACTCTGAGTTATTGAGCATCAT TTTACCGTACTGACGAGAGTGCCAATTTGCAGATGGTACAAACGAAGAAG ATACCGATGATCTCTGGCTGGTATGCCGGTGTTGGTGGAGACAACAAGCC GTAGCTGCTGGCGGCAGTACCATTGCACTCACGGATGCGGTCGTCTGCAG ACCGCTTCCAGCACTTTGGTAGGGTTGACTTATCTTGCTAGGGTAAAAGA GGCCGTGTTGGGAGCATCAACTTACCTGAATTGGGCACGTTTCTTTCGCG CAGCTACTATGCGTGCGTGCGTCTTCAACGTACTCTCTTTCCTGCGTGTT TTTTTGCGTCTCCACATGATGCGTGTAGGTGGCTGGCGAACCTGGAGAAG AGCCTGGAGTTAGCCGGCGGCGACTATTTCGCCGGAGGCAGGGTGGGTGA AAATGTCTTTACGATAGTGCCGGTCTCGTGAATCTGTGCAACGTTTTCCG GTGTTGATTTTGTATTACATGGAACTTCTCATCGGAGTGATTCGGTTTCT AAAGGTAGAGAGTGGGATGTCACGGGCAGAAGTATGCAAGCTCAGCCGCA CGTTCCTACTCTTCATCCTGGAACGACGCGCCGATCAGAGGTAATCATTG GTTTGACAGCTCTGTTATTCGTCATGATATGTGCGCGTTATATGACAAAG ATGGCGCTTGAAGATACTTTCGATATTCTTGTGTCGTTTTCAGTCTCTGT TGTGTAATTTGTCTTGTACTGCATCACGTAGCGCGTCCTCTCTTCCTCCC CACCTCACACCTCCCACACACACTATACCAGCCAGTTTTTGCTTACTTGT AGCCCCCCGTTAGCTTGAATTAATATCTAGTTCCTCTAGTCCGCCGTCGA AAGAAAAGCTCATTTGCCTGATATCGTGGATAACCCCTACTCCTCGAAAC CGTCTTCCATCTATTTGGCGTTCTAATATCCGTATATCGGTGGAAACGTC GGCCTCGCTCATACAGTATTCGTGTGGGTATCGTATCCGTTTATGGTATA TTGTGGTCGTGTTCTATCCGCTCTCCCTTGATCCTGTTCCCCCACCCCCT TCTGTTCCGTTGTGTATACAGCTCTCCATCGGTGACATTGCTGTTGTGGC GAGGATACTCTGGATGAAGGAGGGGACGCCCTCCCTGGATGGAATCCCGA GCACCATC
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Coding sequence (CDS) from alignment at H-paniculata_contig18402:3449..5206+

>mRNA_H-paniculata_contig18402.4513.1 ID=mRNA_H-paniculata_contig18402.4513.1|Name=mRNA_H-paniculata_contig18402.4513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig18402:3449..5206+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTACCCCCACGACCCCGTCGAAGCGGCCTTCGCCGATGCTGCGGTCGA
CTCGGTGTCAGACATGCACCTTAAACTCCTTCCCACCATTGCGGAGAAGG
ACATGACCAAGAAGCTCTACCCCCACGACCCCGTCGAAGCGGCCTTCGCC
GATGCTGCGGTCGACTCGGTGTCAGACATGCACCTTAAACTCCTTCCCAC
CATTGCGGAGAAGGACATGACCAAGAAGCTTGAAATGCGCAAGGATTTGG
TGAACGACTTCCTTCCAAACTTGAAATGCGCAAGGATTTGGTGAACGACT
TCCTTCCAAAGTGGCTGGCGAACCTGGAGAAGAGCCTGGAGTTAGCCGGC
GGCGACTATTTCGCCGGAGGCAGGGTGGCTGGCGAACCTGGAGAAGAGCC
TGGAGTTAGCCGGCGGCGACTATTTCGCCGGAGGCAGGCTCTCCATCGGT
GACATTGCTGTTGTGGCGAGGATACTCTGGATGAAGGAGGGGACGCCCTC
CCTGGATGGAATCCCGAGCACCATCCTCTCCATCGGTGACATTGCTGTTG
TGGCGAGGATACTCTGGATGAAGGAGGGGACGCCCTCCCTGGATGGAATC
CCGAGCACCATC
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