mRNA_H-paniculata_contig1839.4505.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1839.4505.1
Unique NamemRNA_H-paniculata_contig1839.4505.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1839.4505.1 vs. uniprot
Match: D8LSH5_ECTSI (Ornithine aminotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSH5_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.020e-29
Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    1 MLTIKPGQHGSTYGGNPMACRVATAALEVLREENLALNSIRMGERLRNGLLLMTAPAVELIRGRGLLNAVVINVSEG 231
            MLT+KPGQHGSTYGGNPMACRVATAALEVLREE +A N+  MGERLR GL  + AP VELIRGRGLLNAVV+    G
Sbjct:  315 MLTVKPGQHGSTYGGNPMACRVATAALEVLREEGMAENACLMGERLRAGLRSLNAPGVELIRGRGLLNAVVVKDDRG 391          
BLAST of mRNA_H-paniculata_contig1839.4505.1 vs. uniprot
Match: A0A835Z9I4_9STRA (Ornithine aminotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9I4_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.360e-27
Identity = 51/72 (70.83%), Postives = 64/72 (88.89%), Query Frame = 1
Query:    1 MLTIKPGQHGSTYGGNPMACRVATAALEVLREENLALNSIRMGERLRNGLLLMTAPAVELIRGRGLLNAVVI 216
            MLTIKPG+HGSTYGGNPMACRVA AAL+VL++EN+A N+  MG+RLR+GL  + AP VEL+RG+GLLNA+V+
Sbjct:  338 MLTIKPGEHGSTYGGNPMACRVAMAALQVLKDENMAENATEMGQRLRDGLRAINAPVVELVRGKGLLNAIVV 409          
BLAST of mRNA_H-paniculata_contig1839.4505.1 vs. uniprot
Match: UPI000CCC5654 (ornithine aminotransferase, mitochondrial-like n=1 Tax=Myotis lucifugus TaxID=59463 RepID=UPI000CCC5654)

HSP 1 Score: 103 bits (256), Expect = 1.580e-26
Identity = 51/79 (64.56%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    1 MLTIKPGQHGSTYGGNPMACRVATAALEVLREENLALNSIRMGERLRNGLLLMTAPAVELIRGRGLLNAVVINVSEGGR 237
            MLTIKPG+HGSTYGGNP+  RVA AALEVL EENLA N+ RMG  LRN L+ + +  V  +RG+GLLNA+VI  ++GGR
Sbjct:    1 MLTIKPGEHGSTYGGNPLGSRVAIAALEVLEEENLAENADRMGALLRNELMKLPSDIVTAVRGKGLLNAIVIRETKGGR 79          
BLAST of mRNA_H-paniculata_contig1839.4505.1 vs. uniprot
Match: A0A7S4M4T0_9STRA (Ornithine aminotransferase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M4T0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.160e-26
Identity = 51/78 (65.38%), Postives = 65/78 (83.33%), Query Frame = 1
Query:    1 MLTIKPGQHGSTYGGNPMACRVATAALEVLREENLALNSIRMGERLRNGLLLMT-APAVELIRGRGLLNAVVINVSEG 231
            MLT+KPG+HGSTYGGNP+AC+VATAALEVLR+E L+ NS   GE+LR GLL +T +  +E +RGRGLLNA+VI+  +G
Sbjct:  101 MLTLKPGEHGSTYGGNPLACKVATAALEVLRDEKLSENSAARGEQLREGLLALTGSTCIETVRGRGLLNAIVIDQPKG 178          
BLAST of mRNA_H-paniculata_contig1839.4505.1 vs. uniprot
Match: A0A5B9WUE6_9BACT (Ornithine aminotransferase n=1 Tax=Chitinophaga sp. XS-30 TaxID=2604421 RepID=A0A5B9WUE6_9BACT)

HSP 1 Score: 107 bits (267), Expect = 1.000e-25
Identity = 48/73 (65.75%), Postives = 63/73 (86.30%), Query Frame = 1
Query:    1 MLTIKPGQHGSTYGGNPMACRVATAALEVLREENLALNSIRMGERLRNGLLLMTAPAVELIRGRGLLNAVVIN 219
            MLTI+PG+HGSTYGGNP+AC+VA AALEVLR+E +A N++ MGERLR G+  + +P + L+RG+GLLNA+VIN
Sbjct:  277 MLTIRPGEHGSTYGGNPLACKVAMAALEVLRDEGMAENAVVMGERLRKGITAIRSPFISLVRGKGLLNAIVIN 349          
BLAST of mRNA_H-paniculata_contig1839.4505.1 vs. uniprot
Match: A0A7S2B6N1_9STRA (Ornithine aminotransferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B6N1_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.870e-25
Identity = 48/78 (61.54%), Postives = 63/78 (80.77%), Query Frame = 1
Query:    1 MLTIKPGQHGSTYGGNPMACRVATAALEVLREENLALNSIRMGERLRNGLLLMTAPAVELIRGRGLLNAVVINVSEGG 234
            +LTIKPG+HGSTYGGNP+ACRVA AAL VL++EN+A NS+ MGERLR GL  +    +  +RGRGLL+A+V++ +E G
Sbjct:   65 ILTIKPGEHGSTYGGNPLACRVAMAALNVLKDENMAENSLVMGERLRAGLAAIDTDLITTVRGRGLLSAIVVDDTEEG 142          
BLAST of mRNA_H-paniculata_contig1839.4505.1 vs. uniprot
Match: A0A1E7FE82_9STRA (Ornithine aminotransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE82_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.410e-25
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 MLTIKPGQHGSTYGGNPMACRVATAALEVLREENLALNSIRMGERLRNGLL-LMTAPAVELIRGRGLLNAVVINVSEGG 234
            MLT+ PG+HGSTYGGNP+AC+VA AALEVLR+ENLA NS   GE+LR GL  L+   AVE +RGRGLLNAVVIN  +GG
Sbjct:  299 MLTLNPGEHGSTYGGNPLACKVAVAALEVLRDENLAENSQARGEQLRKGLSSLVGNSAVETVRGRGLLNAVVINQPKGG 377          
BLAST of mRNA_H-paniculata_contig1839.4505.1 vs. uniprot
Match: A0A7S1G0H6_9STRA (Ornithine aminotransferase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G0H6_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.420e-25
Identity = 50/80 (62.50%), Postives = 64/80 (80.00%), Query Frame = 1
Query:    1 MLTIKPGQHGSTYGGNPMACRVATAALEVLREENLALNSIRMGERLR---NGLLLMTAPAVELIRGRGLLNAVVINVSEG 231
            MLTIKPGQHGSTYGGNP+AC+VATAALEVLR+E L  NS+  G +LR   NG++    P ++++RGRGLLNA++I+  EG
Sbjct:  211 MLTIKPGQHGSTYGGNPLACKVATAALEVLRDEKLTDNSVARGNQLRDGLNGIIQAGVPGIKVVRGRGLLNAIIIDEPEG 290          
BLAST of mRNA_H-paniculata_contig1839.4505.1 vs. uniprot
Match: A0A7S1BXN2_9STRA (Ornithine aminotransferase n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BXN2_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.230e-24
Identity = 50/80 (62.50%), Postives = 64/80 (80.00%), Query Frame = 1
Query:    1 MLTIKPGQHGSTYGGNPMACRVATAALEVLREENLALNSIRMGERLR---NGLLLMTAPAVELIRGRGLLNAVVINVSEG 231
            MLTIKPGQHGSTYGGNP+AC+VATAALEVLR+E L  NS+  G +LR   NG++    P ++++RGRGLLNA++I+  EG
Sbjct:  340 MLTIKPGQHGSTYGGNPLACKVATAALEVLRDEKLTDNSVARGNQLRDGLNGIIQAGVPGIKVVRGRGLLNAIIIDEPEG 419          
BLAST of mRNA_H-paniculata_contig1839.4505.1 vs. uniprot
Match: A0A4Q6EXS9_9PROT (Ornithine aminotransferase n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6EXS9_9PROT)

HSP 1 Score: 104 bits (259), Expect = 1.310e-24
Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 MLTIKPGQHGSTYGGNPMACRVATAALEVLREENLALNSIRMGERLRNGLLLMTAPAVELIRGRGLLNAVVI 216
            MLTIKPG+HGSTYGGNP+ACRVAT ALEVLR+E LA NS +MGE LR  L  +  P V+L+RGRGL+NA+V+
Sbjct:  275 MLTIKPGEHGSTYGGNPLACRVATVALEVLRDEKLAENSAKMGELLRAELAKLKQPWVKLVRGRGLMNAIVV 346          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1839.4505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSH5_ECTSI1.020e-2976.62Ornithine aminotransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A835Z9I4_9STRA3.360e-2770.83Ornithine aminotransferase n=1 Tax=Tribonema minus... [more]
UPI000CCC56541.580e-2664.56ornithine aminotransferase, mitochondrial-like n=1... [more]
A0A7S4M4T0_9STRA3.160e-2665.38Ornithine aminotransferase n=1 Tax=Odontella aurit... [more]
A0A5B9WUE6_9BACT1.000e-2565.75Ornithine aminotransferase n=1 Tax=Chitinophaga sp... [more]
A0A7S2B6N1_9STRA1.870e-2561.54Ornithine aminotransferase n=1 Tax=Florenciella pa... [more]
A0A1E7FE82_9STRA3.410e-2569.62Ornithine aminotransferase n=1 Tax=Fragilariopsis ... [more]
A0A7S1G0H6_9STRA3.420e-2562.50Ornithine aminotransferase n=2 Tax=Corethron hystr... [more]
A0A7S1BXN2_9STRA1.230e-2462.50Ornithine aminotransferase n=4 Tax=Corethron hystr... [more]
A0A4Q6EXS9_9PROT1.310e-2469.44Ornithine aminotransferase n=2 Tax=Proteobacteria ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1839contigH-paniculata_contig1839:20494..20954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score100.5
Seed ortholog evalue4e-19
Seed eggNOG ortholog9978.XP_004579807.1
Preferred nameOAT
KEGG rclassRC00006,RC00062
KEGG koko:K00819
KEGG ReactionR00667
KEGG Pathwayko00330,ko01100,ko01110,ko01130,map00330,map01100,map01110,map01130
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0003824,GO:0003992,GO:0004587,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006591,GO:0006807,GO:0007600,GO:0007601,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009987,GO:0016043,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0019842,GO:0022607,GO:0030170,GO:0031974,GO:0031981,GO:0032501,GO:0034214,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0050877,GO:0050953,GO:0051259,GO:0065003,GO:0070013,GO:0070279,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605
EggNOG free text desc.ornithine-oxo-acid transaminase activity
EggNOG OGs35E0Z@314146,38EEM@33154,3BC6G@33208,3CVEK@33213,3J5C8@40674,489RC@7711,48XYA@7742,COG4992@1,KOG1402@2759
EC2.6.1.13
COG Functional cat.E
Best tax levelEuarchontoglires
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01007
Exons2
Model size261
Cds size261
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929425.3401859-CDS-H-paniculata_contig1839:20493..207141622929425.3401859-CDS-H-paniculata_contig1839:20493..20714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1839 20494..20714 -
1691480855.811857-CDS-H-paniculata_contig1839:20493..207141691480855.811857-CDS-H-paniculata_contig1839:20493..20714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1839 20494..20714 -
1622929425.3596442-CDS-H-paniculata_contig1839:20914..209541622929425.3596442-CDS-H-paniculata_contig1839:20914..20954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1839 20915..20954 -
1691480855.8226302-CDS-H-paniculata_contig1839:20914..209541691480855.8226302-CDS-H-paniculata_contig1839:20914..20954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1839 20915..20954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1839.4505.1prot_H-paniculata_contig1839.4505.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1839 20494..20954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1839.4505.1

>prot_H-paniculata_contig1839.4505.1 ID=prot_H-paniculata_contig1839.4505.1|Name=mRNA_H-paniculata_contig1839.4505.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MLTIKPGQHGSTYGGNPMACRVATAALEVLREENLALNSIRMGERLRNGL
LLMTAPAVELIRGRGLLNAVVINVSEGGRCTCTREY*
back to top

mRNA from alignment at H-paniculata_contig1839:20494..20954-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1839.4505.1 ID=mRNA_H-paniculata_contig1839.4505.1|Name=mRNA_H-paniculata_contig1839.4505.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=461bp|location=Sequence derived from alignment at H-paniculata_contig1839:20494..20954- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCACGATCAAGCCCGGCCAGCACGGCTCCACCTACGGTAATTTTAT TTGATTCTTATTTTTATTTTTTGCCGAGTTAAATTTGGCGTTGAAAGTCT GTTTGTTTTTGCTGTGCCCCCGTCAACTCCGTCCGATTTTTTTGTGGAAT CAAAGGAAGCATTTATCAAGTGACTCATCGTTACCTTTCAATCTTGGACG GATGATTATTGACGTTGTGTGTGTATGTGTTCTTTGCCAGGGGGTAACCC TATGGCCTGTCGAGTGGCAACAGCGGCGCTCGAGGTCCTCCGCGAAGAAA ATCTTGCTCTCAACTCAATACGGATGGGCGAGAGATTGCGCAATGGTCTT CTGTTGATGACTGCTCCGGCGGTGGAGTTGATCAGGGGACGCGGCCTGCT CAACGCGGTCGTGATAAATGTGAGTGAGGGAGGAAGGTGTACCTGCACAA GAGAATATTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1839:20494..20954-

>mRNA_H-paniculata_contig1839.4505.1 ID=mRNA_H-paniculata_contig1839.4505.1|Name=mRNA_H-paniculata_contig1839.4505.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig1839:20494..20954- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCACGATCAAGCCCGGCCAGCACGGCTCCACCTACGATGCTCACGA
TCAAGCCCGGCCAGCACGGCTCCACCTACGGGGGTAACCCTATGGCCTGT
CGAGTGGCAACAGCGGCGCTCGAGGTCCTCCGCGAAGAAAATCTTGCTCT
CAACTCAATACGGATGGGCGAGAGATTGCGCAATGGTCTTCTGTTGATGA
CTGCTCCGGCGGTGGAGTTGATCAGGGGACGCGGCCTGCTCAACGCGGTC
GTGATAAATGTGAGTGAGGGAGGAAGGTGTACCTGCACAAGAGAATATTA
GGGGGTAACCCTATGGCCTGTCGAGTGGCAACAGCGGCGCTCGAGGTCCT
CCGCGAAGAAAATCTTGCTCTCAACTCAATACGGATGGGCGAGAGATTGC
GCAATGGTCTTCTGTTGATGACTGCTCCGGCGGTGGAGTTGATCAGGGGA
CGCGGCCTGCTCAACGCGGTCGTGATAAATGTGAGTGAGGGAGGAAGGTG
TACCTGCACAAGAGAATATTAG
back to top