mRNA_H-paniculata_contig18314.4484.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18314.4484.1
Unique NamemRNA_H-paniculata_contig18314.4484.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18314.4484.1 vs. uniprot
Match: D8LDF2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF2_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 6.660e-77
Identity = 122/180 (67.78%), Postives = 147/180 (81.67%), Query Frame = 1
Query:    1 VLASLSSPILQAWFCEIMEERRFRALTKTPAFPVCVVGAALAISGMSREESLISPPNDEN-DMSDFQVTMFVIFLIVTAIFLVYHFAEAWRVLPGAHLISGIGVPRIQIQEDLLSIYVASRMLILTYFILYIAFSIARDDGWGYQHYLMAWVLSLFAQFKAVPSVVWLGLTTGVFLQGIG 537
            +L  L   + QAWFCEIMEERRFR L     FP+ +VGAALA+SG+SR ESL +   +E  D++ FQV +F+I LI+T + L+ HFAEAW+VLPGAHLISG+GVPR++++EDLLSIYVASRMLIL YFILY AFS+ARDDGWGYQ YL+AWVLSLFAQFK+  SV WL +TTGVFLQGIG
Sbjct:   81 LLVLLVFSLAQAWFCEIMEERRFRDLASKVYFPLLMVGAALALSGLSRAESLRNSLQEERRDLTTFQVAIFIILLILTVVVLLLHFAEAWKVLPGAHLISGVGVPRVEVREDLLSIYVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIG 260          
BLAST of mRNA_H-paniculata_contig18314.4484.1 vs. uniprot
Match: D7G1P1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P1_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 9.110e-40
Identity = 80/180 (44.44%), Postives = 111/180 (61.67%), Query Frame = 1
Query:    1 VLASLSSPILQAWFCEIMEERRFRALTKTPAFPVCVVGAALAISGMSREESLISPP-NDENDMSDFQVTMFVIFLIVTAIFLVYHFAEAWRVLPGAHLISGIGVPRIQIQEDLLSIYVASRMLILTYFILYIAFSIARDDGWGYQHYLMAWVLSLFAQFKAVPSVVWLGLTTGVFLQGIG 537
            +LA L   + QAWFCE++EERRFR LT+   F + ++   L +S +   +       ND +D  D  + M V+ +    + + YHFAEAWR LPGA+ +SG     I I+E+L  IY  SR LI++Y +LY AF+    DG    + L+AWVLSL AQFK+ PS++WL L TGVF+QG G
Sbjct:   78 LLALLVFGLTQAWFCEVLEERRFRHLTREAYFGIVIIVIGLIVSAIETTDWFQDMRFNDNSDWRDSHIVMAVVLITFVLVIVAYHFAEAWRTLPGAYYVSGNINLDIVIEENLHRIYNVSRGLIVSYALLYGAFAFEEGDGLKQHYVLLAWVLSLTAQFKSKPSIIWLALCTGVFIQGFG 257          
BLAST of mRNA_H-paniculata_contig18314.4484.1 vs. uniprot
Match: D8LDF3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF3_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 6.910e-29
Identity = 72/176 (40.91%), Postives = 104/176 (59.09%), Query Frame = 1
Query:   25 ILQAWFCEIMEERRFRALTKTPAFPVCVVGAALAISGMSREESLISPPNDENDMSDFQV-----TMFVIFLIVTAIFLVYHFAEAWRVLPGAHLISGIGVPRIQIQEDLLSIYVASRMLILTYFILYIAFSIARDDGWGYQHYLMAWVLSLFAQFKAVPSVVWLGLTTGVFLQGIG 537
            + QA++CEI+ + RF  L K P     ++   + IS + R   L     D N+  DF+      T+FV  LI   + + +HFA AW  LPG  L+SG GV     +EDL  IY +SR++I+ + IL+ +F I+ DDG+ Y+  L+AW+LSL A F    S +WLG+ TG+FLQGIG
Sbjct:   58 LAQAYWCEILLDDRFEELKKAPWIFGVILITPIIISALGRIGGLERWDKD-NEGKDFEFSALRSTIFVFGLIAAVLLVAWHFARAWLTLPGMQLLSG-GVKVEPPKEDLHGIYSSSRIVIIAWCILFTSFIISEDDGFDYRGALLAWMLSLIAVFPHPVSYIWLGVNTGIFLQGIG 231          
BLAST of mRNA_H-paniculata_contig18314.4484.1 vs. uniprot
Match: A0A6H5JMR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR1_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.710e-27
Identity = 65/179 (36.31%), Postives = 99/179 (55.31%), Query Frame = 1
Query:   25 ILQAWFCEIMEERRFRALTKTPAFPVCVVGAALAISGMSREESLISPPNDENDMSDFQVTMFVIFLIVTAIFLVYHFAEAWRVLPGAHLISGIGVPRIQIQE--------DLLSIYVASRMLILTYFILYIAFSIARDDGWGYQHYLMAWVLSLFAQFKAVPSVVWLGLTTGVFLQGIG 537
            +  A+ C I+   R+ AL+K   FPV V+ + LA S +   +      +   D+S  +  + +I LI+ A+   YH+  AW+ LPG  L  G G+   Q+ E        +    Y+AS  +I+ Y +L+ AF+ +R D W Y + L+AW++SL A F    SV WLG+TTGVFLQG+G
Sbjct:   91 VFAAFMCGILNGTRYHALSKKMYFPVLVIASGLATSALMNNDGFEGLHDPGGDLSPAEAALSIILLILVALVFAYHYFLAWKFLPGGWL--GWGMVSGQVAEPPPPSRAENRYLQYMASITVIMLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVG 267          
BLAST of mRNA_H-paniculata_contig18314.4484.1 vs. uniprot
Match: A0A6H5JIF9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIF9_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.880e-25
Identity = 61/173 (35.26%), Postives = 94/173 (54.34%), Query Frame = 1
Query:   34 AWFCEIMEERRFRALTKTPAFPVCVVGAALAISGMSREESLISPPNDENDMSDFQVTMFVIFLIVTAIFLVYHFAEAWRVLPGAHLISG-IGVPRIQIQE----DLLSIYVASRMLILTYFILYIAFSIARDDGWGYQHYLMAWVLSLFAQFKAVPSVVWLGLTTGVFLQGIG 537
            A+ C+ ++  RF +L+K    PV VVG+ +  S +++ +  +     E+ M+     +  + +I   +  VYHF  AW  LPGA +ISG +  P          +  + Y+A+ +L+  +  L  AF   R D W Y + L+AWV+SL A F    SVVWLG+TTG FLQG+G
Sbjct:   66 AFLCDTLDSERFHSLSKERYLPVVVVGSGITTSALTKNDGFVDTHEIEDGMTTAVNVVSTLLVIAVGLAFVYHFFVAWTTLPGAVMISGGVSTPEDATAPVRSGNRFARYMATAVLVAAFVALNAAFVHRRGDNWNYHYTLLAWVMSLIAIFDDPFSVVWLGVTTGAFLQGVG 238          
BLAST of mRNA_H-paniculata_contig18314.4484.1 vs. uniprot
Match: D7G1N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N8_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 5.580e-19
Identity = 49/127 (38.58%), Postives = 75/127 (59.06%), Query Frame = 1
Query:  181 DMSDFQVTMFVIFLIVTAIFLVYHFAEAWRVLPGAHLISGIGVPRIQIQE--------DLLSIYVASRMLILTYFILYIAFSIARDDGWGYQHYLMAWVLSLFAQFKAVPSVVWLGLTTGVFLQGIG 537
            ++S  +  + +I L++ A+   YH+  AW+ LPG  L  G G+   Q+ E        +    Y+AS  +I+ Y +L+ AF+ +R D W Y + L+AW++SL A F    SV WLG+TTGVFLQG+G
Sbjct:   15 ELSPAEAALSIILLVLVALVFAYHYFLAWKFLPGGWL--GWGMVSGQVAEPPPPSRAENRYLQYMASITVIMVYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVG 139          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18314.4484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LDF2_ECTSI6.660e-7767.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G1P1_ECTSI9.110e-4044.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LDF3_ECTSI6.910e-2940.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JMR1_9PHAE1.710e-2736.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIF9_9PHAE2.880e-2535.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G1N8_ECTSI5.580e-1938.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18314contigH-paniculata_contig18314:4328..5119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_000840.1
Exons2
Model size537
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.9473233-CDS-H-paniculata_contig18314:4327..47481622929422.9473233-CDS-H-paniculata_contig18314:4327..4748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18314 4328..4748 -
1691480854.6761286-CDS-H-paniculata_contig18314:4327..47481691480854.6761286-CDS-H-paniculata_contig18314:4327..4748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18314 4328..4748 -
1622929422.967097-CDS-H-paniculata_contig18314:5003..51191622929422.967097-CDS-H-paniculata_contig18314:5003..5119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18314 5004..5119 -
1691480854.68768-CDS-H-paniculata_contig18314:5003..51191691480854.68768-CDS-H-paniculata_contig18314:5003..5119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18314 5004..5119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18314.4484.1prot_H-paniculata_contig18314.4484.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18314 4328..5119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18314.4484.1

>prot_H-paniculata_contig18314.4484.1 ID=prot_H-paniculata_contig18314.4484.1|Name=mRNA_H-paniculata_contig18314.4484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
VLASLSSPILQAWFCEIMEERRFRALTKTPAFPVCVVGAALAISGMSREE
SLISPPNDENDMSDFQVTMFVIFLIVTAIFLVYHFAEAWRVLPGAHLISG
IGVPRIQIQEDLLSIYVASRMLILTYFILYIAFSIARDDGWGYQHYLMAW
VLSLFAQFKAVPSVVWLGLTTGVFLQGIG
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mRNA from alignment at H-paniculata_contig18314:4328..5119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18314.4484.1 ID=mRNA_H-paniculata_contig18314.4484.1|Name=mRNA_H-paniculata_contig18314.4484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=792bp|location=Sequence derived from alignment at H-paniculata_contig18314:4328..5119- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCTGGCTTCTCTTTCGTCGCCAATATTGCAGGCATGGTTCTGCGAAAT CATGGAGGAGAGGAGGTTCAGAGCGCTCACCAAGACTCCTGCCTTCCCCG TCTGTGTCGTCGGAGCGTGAGTATTCGGTTGGTTTGTATTTGAAGAGAGA AAATAAAATGCTATAATTTTCCCTCGTCACAGGTTTGATGTCGAACGAAT ACTGCGAAGCCCCGTCTGGCTTGCCTAGATGAAGAGTTACTTGTATGTTA TTCACACATCAGCTCGACTCCATGGGCGCAGGGTAAATGGGAAATGGATT AGAATATGGTACCCAAAGCAGTAATGAAATAAATATGTGTCCTCCCCACA CTATCCCCCCCTCCATTACAGGGCCCTGGCCATATCCGGTATGTCGCGCG AGGAATCACTCATCAGCCCCCCAAATGATGAAAACGACATGAGCGACTTC CAGGTGACCATGTTCGTGATCTTCCTCATCGTAACGGCGATCTTCTTGGT TTACCACTTTGCGGAGGCATGGAGGGTGCTGCCCGGCGCACACCTGATCT CGGGTATCGGAGTGCCTCGCATCCAGATCCAGGAGGACTTGCTGTCGATC TACGTGGCGTCTCGCATGCTCATCCTGACGTACTTCATCCTCTACATCGC GTTCTCGATTGCGAGAGATGATGGTTGGGGCTACCAGCACTACTTGATGG CGTGGGTGTTGTCCCTCTTTGCTCAGTTCAAGGCCGTGCCTAGCGTGGTC TGGCTTGGTTTGACCACGGGCGTGTTTCTTCAGGGAATTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig18314:4328..5119-

>mRNA_H-paniculata_contig18314.4484.1 ID=mRNA_H-paniculata_contig18314.4484.1|Name=mRNA_H-paniculata_contig18314.4484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig18314:4328..5119- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCTGGCTTCTCTTTCGTCGCCAATATTGCAGGCATGGTTCTGCGAAAT
CATGGAGGAGAGGAGGTTCAGAGCGCTCACCAAGACTCCTGCCTTCCCCG
TCTGTGTCGTCGGAGCGTCCTGGCTTCTCTTTCGTCGCCAATATTGCAGG
CATGGTTCTGCGAAATCATGGAGGAGAGGAGGTTCAGAGCGCTCACCAAG
ACTCCTGCCTTCCCCGTCTGTGTCGTCGGAGCGGCCCTGGCCATATCCGG
TATGTCGCGCGAGGAATCACTCATCAGCCCCCCAAATGATGAAAACGACA
TGAGCGACTTCCAGGTGACCATGTTCGTGATCTTCCTCATCGTAACGGCG
ATCTTCTTGGTTTACCACTTTGCGGAGGCATGGAGGGTGCTGCCCGGCGC
ACACCTGATCTCGGGTATCGGAGTGCCTCGCATCCAGATCCAGGAGGACT
TGCTGTCGATCTACGTGGCGTCTCGCATGCTCATCCTGACGTACTTCATC
CTCTACATCGCGTTCTCGATTGCGAGAGATGATGGTTGGGGCTACCAGCA
CTACTTGATGGCGTGGGTGTTGTCCCTCTTTGCTCAGTTCAAGGCCGTGC
CTAGCGTGGTCTGGCTTGGTTTGACCACGGGCGTGTTTCTTCAGGGAATT
GGGGGCCCTGGCCATATCCGGTATGTCGCGCGAGGAATCACTCATCAGCC
CCCCAAATGATGAAAACGACATGAGCGACTTCCAGGTGACCATGTTCGTG
ATCTTCCTCATCGTAACGGCGATCTTCTTGGTTTACCACTTTGCGGAGGC
ATGGAGGGTGCTGCCCGGCGCACACCTGATCTCGGGTATCGGAGTGCCTC
GCATCCAGATCCAGGAGGACTTGCTGTCGATCTACGTGGCGTCTCGCATG
CTCATCCTGACGTACTTCATCCTCTACATCGCGTTCTCGATTGCGAGAGA
TGATGGTTGGGGCTACCAGCACTACTTGATGGCGTGGGTGTTGTCCCTCT
TTGCTCAGTTCAAGGCCGTGCCTAGCGTGGTCTGGCTTGGTTTGACCACG
GGCGTGTTTCTTCAGGGAATTGGG
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