mRNA_H-paniculata_contig18314.4484.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18314.4484.1 vs. uniprot
Match: D8LDF2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF2_ECTSI) HSP 1 Score: 239 bits (611), Expect = 6.660e-77 Identity = 122/180 (67.78%), Postives = 147/180 (81.67%), Query Frame = 1
Query: 1 VLASLSSPILQAWFCEIMEERRFRALTKTPAFPVCVVGAALAISGMSREESLISPPNDEN-DMSDFQVTMFVIFLIVTAIFLVYHFAEAWRVLPGAHLISGIGVPRIQIQEDLLSIYVASRMLILTYFILYIAFSIARDDGWGYQHYLMAWVLSLFAQFKAVPSVVWLGLTTGVFLQGIG 537
+L L + QAWFCEIMEERRFR L FP+ +VGAALA+SG+SR ESL + +E D++ FQV +F+I LI+T + L+ HFAEAW+VLPGAHLISG+GVPR++++EDLLSIYVASRMLIL YFILY AFS+ARDDGWGYQ YL+AWVLSLFAQFK+ SV WL +TTGVFLQGIG
Sbjct: 81 LLVLLVFSLAQAWFCEIMEERRFRDLASKVYFPLLMVGAALALSGLSRAESLRNSLQEERRDLTTFQVAIFIILLILTVVVLLLHFAEAWKVLPGAHLISGVGVPRVEVREDLLSIYVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIG 260
BLAST of mRNA_H-paniculata_contig18314.4484.1 vs. uniprot
Match: D7G1P1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1P1_ECTSI) HSP 1 Score: 146 bits (368), Expect = 9.110e-40 Identity = 80/180 (44.44%), Postives = 111/180 (61.67%), Query Frame = 1
Query: 1 VLASLSSPILQAWFCEIMEERRFRALTKTPAFPVCVVGAALAISGMSREESLISPP-NDENDMSDFQVTMFVIFLIVTAIFLVYHFAEAWRVLPGAHLISGIGVPRIQIQEDLLSIYVASRMLILTYFILYIAFSIARDDGWGYQHYLMAWVLSLFAQFKAVPSVVWLGLTTGVFLQGIG 537
+LA L + QAWFCE++EERRFR LT+ F + ++ L +S + + ND +D D + M V+ + + + YHFAEAWR LPGA+ +SG I I+E+L IY SR LI++Y +LY AF+ DG + L+AWVLSL AQFK+ PS++WL L TGVF+QG G
Sbjct: 78 LLALLVFGLTQAWFCEVLEERRFRHLTREAYFGIVIIVIGLIVSAIETTDWFQDMRFNDNSDWRDSHIVMAVVLITFVLVIVAYHFAEAWRTLPGAYYVSGNINLDIVIEENLHRIYNVSRGLIVSYALLYGAFAFEEGDGLKQHYVLLAWVLSLTAQFKSKPSIIWLALCTGVFIQGFG 257
BLAST of mRNA_H-paniculata_contig18314.4484.1 vs. uniprot
Match: D8LDF3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF3_ECTSI) HSP 1 Score: 116 bits (290), Expect = 6.910e-29 Identity = 72/176 (40.91%), Postives = 104/176 (59.09%), Query Frame = 1
Query: 25 ILQAWFCEIMEERRFRALTKTPAFPVCVVGAALAISGMSREESLISPPNDENDMSDFQV-----TMFVIFLIVTAIFLVYHFAEAWRVLPGAHLISGIGVPRIQIQEDLLSIYVASRMLILTYFILYIAFSIARDDGWGYQHYLMAWVLSLFAQFKAVPSVVWLGLTTGVFLQGIG 537
+ QA++CEI+ + RF L K P ++ + IS + R L D N+ DF+ T+FV LI + + +HFA AW LPG L+SG GV +EDL IY +SR++I+ + IL+ +F I+ DDG+ Y+ L+AW+LSL A F S +WLG+ TG+FLQGIG
Sbjct: 58 LAQAYWCEILLDDRFEELKKAPWIFGVILITPIIISALGRIGGLERWDKD-NEGKDFEFSALRSTIFVFGLIAAVLLVAWHFARAWLTLPGMQLLSG-GVKVEPPKEDLHGIYSSSRIVIIAWCILFTSFIISEDDGFDYRGALLAWMLSLIAVFPHPVSYIWLGVNTGIFLQGIG 231
BLAST of mRNA_H-paniculata_contig18314.4484.1 vs. uniprot
Match: A0A6H5JMR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR1_9PHAE) HSP 1 Score: 113 bits (283), Expect = 1.710e-27 Identity = 65/179 (36.31%), Postives = 99/179 (55.31%), Query Frame = 1
Query: 25 ILQAWFCEIMEERRFRALTKTPAFPVCVVGAALAISGMSREESLISPPNDENDMSDFQVTMFVIFLIVTAIFLVYHFAEAWRVLPGAHLISGIGVPRIQIQE--------DLLSIYVASRMLILTYFILYIAFSIARDDGWGYQHYLMAWVLSLFAQFKAVPSVVWLGLTTGVFLQGIG 537
+ A+ C I+ R+ AL+K FPV V+ + LA S + + + D+S + + +I LI+ A+ YH+ AW+ LPG L G G+ Q+ E + Y+AS +I+ Y +L+ AF+ +R D W Y + L+AW++SL A F SV WLG+TTGVFLQG+G
Sbjct: 91 VFAAFMCGILNGTRYHALSKKMYFPVLVIASGLATSALMNNDGFEGLHDPGGDLSPAEAALSIILLILVALVFAYHYFLAWKFLPGGWL--GWGMVSGQVAEPPPPSRAENRYLQYMASITVIMLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVG 267
BLAST of mRNA_H-paniculata_contig18314.4484.1 vs. uniprot
Match: A0A6H5JIF9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIF9_9PHAE) HSP 1 Score: 107 bits (266), Expect = 2.880e-25 Identity = 61/173 (35.26%), Postives = 94/173 (54.34%), Query Frame = 1
Query: 34 AWFCEIMEERRFRALTKTPAFPVCVVGAALAISGMSREESLISPPNDENDMSDFQVTMFVIFLIVTAIFLVYHFAEAWRVLPGAHLISG-IGVPRIQIQE----DLLSIYVASRMLILTYFILYIAFSIARDDGWGYQHYLMAWVLSLFAQFKAVPSVVWLGLTTGVFLQGIG 537
A+ C+ ++ RF +L+K PV VVG+ + S +++ + + E+ M+ + + +I + VYHF AW LPGA +ISG + P + + Y+A+ +L+ + L AF R D W Y + L+AWV+SL A F SVVWLG+TTG FLQG+G
Sbjct: 66 AFLCDTLDSERFHSLSKERYLPVVVVGSGITTSALTKNDGFVDTHEIEDGMTTAVNVVSTLLVIAVGLAFVYHFFVAWTTLPGAVMISGGVSTPEDATAPVRSGNRFARYMATAVLVAAFVALNAAFVHRRGDNWNYHYTLLAWVMSLIAIFDDPFSVVWLGVTTGAFLQGVG 238
BLAST of mRNA_H-paniculata_contig18314.4484.1 vs. uniprot
Match: D7G1N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N8_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 5.580e-19 Identity = 49/127 (38.58%), Postives = 75/127 (59.06%), Query Frame = 1
Query: 181 DMSDFQVTMFVIFLIVTAIFLVYHFAEAWRVLPGAHLISGIGVPRIQIQE--------DLLSIYVASRMLILTYFILYIAFSIARDDGWGYQHYLMAWVLSLFAQFKAVPSVVWLGLTTGVFLQGIG 537
++S + + +I L++ A+ YH+ AW+ LPG L G G+ Q+ E + Y+AS +I+ Y +L+ AF+ +R D W Y + L+AW++SL A F SV WLG+TTGVFLQG+G
Sbjct: 15 ELSPAEAALSIILLVLVALVFAYHYFLAWKFLPGGWL--GWGMVSGQVAEPPPPSRAENRYLQYMASITVIMVYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVG 139 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18314.4484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18314.4484.1 >prot_H-paniculata_contig18314.4484.1 ID=prot_H-paniculata_contig18314.4484.1|Name=mRNA_H-paniculata_contig18314.4484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp VLASLSSPILQAWFCEIMEERRFRALTKTPAFPVCVVGAALAISGMSREEback to top mRNA from alignment at H-paniculata_contig18314:4328..5119- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18314.4484.1 ID=mRNA_H-paniculata_contig18314.4484.1|Name=mRNA_H-paniculata_contig18314.4484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=792bp|location=Sequence derived from alignment at H-paniculata_contig18314:4328..5119- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18314:4328..5119- >mRNA_H-paniculata_contig18314.4484.1 ID=mRNA_H-paniculata_contig18314.4484.1|Name=mRNA_H-paniculata_contig18314.4484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig18314:4328..5119- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |