mRNA_H-paniculata_contig183.4477.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig183.4477.1
Unique NamemRNA_H-paniculata_contig183.4477.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig183.4477.1 vs. uniprot
Match: D7FIZ3_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ3_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 5.120e-88
Identity = 144/256 (56.25%), Postives = 185/256 (72.27%), Query Frame = 2
Query:  311 PRFMSLGEGSEILQVALAPGDSIVAGERSFCYRGLGLKAAEVQNPNERGAIGRALGWT-MKQDKVVKWTNEGTAPTYLGLSSPLPGKVIPVDLRQAGAILTKPQMFLCSVTDNQVTTQNLKLTPEGPFPVYHVDLRKVVGSGMCYIQAGGAAVQKTLGRGEAMMVEMGCVVAFAEKCKIVAEQRTG-FIREPPYSQGFNVKITGPGTVFLQSSHVGRLCQSMAVER-ALVRPAMGDAWKGATLLVVIVAVLLVFFE 1069
            PRF+SLGEGSE+LQVAL PGD+I+A E++F YRGLGL+    Q     G +GRALGW  +K D+VVK+TNEG +PTYLGL++ LPGKVIPV L ++G +L KP +FLCSV +N ++T  +KL  EG      V++RK+ G+GMCYI  GGAAVQK LGRGE+M+VE GCV A ++ CKIV E+R G  IREPPY QGF VKITGPG+VF+QS+H GRL ++   +R A      GD  K A L +VI+ V+    +
Sbjct:   18 PRFLSLGEGSEVLQVALCPGDAILANEKAFVYRGLGLQ----QELQPTGPMGRALGWIGVKNDRVVKFTNEGNSPTYLGLTASLPGKVIPVSLAKSGTLLAKPSVFLCSVVENDISTAKIKLQSEGQSSQQSVEMRKIAGAGMCYIHGGGAAVQKALGRGESMVVEFGCVAAVSDACKIVPEERNGPLIREPPYFQGFQVKITGPGSVFIQSTHTGRLSRASRADRVAQGGSGGGDMMKAAVLTLVIMIVVFTVLD 269          
BLAST of mRNA_H-paniculata_contig183.4477.1 vs. uniprot
Match: A0A7Y5PVV1_9PLAN (TIGR00266 family protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Y5PVV1_9PLAN)

HSP 1 Score: 96.3 bits (238), Expect = 5.490e-19
Identity = 63/211 (29.86%), Postives = 106/211 (50.24%), Query Frame = 2
Query:  329 GEGSEILQVALAPGDSIVAGERSFCYRGLGLKAAEVQNPNERGAIGRALGWTMKQDKVVKWTNEGTAPTYLGLSSPLPGKVIPVDLRQAGAILTKPQMFLCSVTDNQVTTQNLKLTPEGPFPVYHVDLRKVVGSGMCYIQAGGAAVQKTLGRGEAMMVEMGCVVAFAEKCKIVAEQRTGFIREPPYSQG-FNVKITGPGTVFLQSSHVGRL 958
            G+  + +QV LAP D++ A   +F +   G++            + R +G   +   V  +TN+G AP  +  ++P PGKV+P+DL + G +L +   +LCS TD Q++    +    G F      L+++ G G  ++ A G+ V++TLG+GE + V+ GC+VA         +   G        +G F   + GPG V+LQ+    RL
Sbjct:   11 GDDFQYVQVRLAPRDAVRAEPGAFVWMENGIEMETSTGGGVLSGLKRMIGG--ESFFVTTFTNQGGAPATVAFAAPYPGKVLPIDLSR-GTVLCQRDAYLCSTTDAQISVAFTRRFGAGLFGGEGFMLQRIEGRGTAFLHASGSVVERTLGQGETLRVDTGCIVAMEAGVDYDIQMVRGVKSFLFGGEGLFFAVLRGPGRVWLQTLPFSRL 218          
BLAST of mRNA_H-paniculata_contig183.4477.1 vs. uniprot
Match: A0A2K1NT36_9BACT (Uncharacterized protein n=1 Tax=Petrotoga sp. 9PWA.NaAc.5.4 TaxID=1434328 RepID=A0A2K1NT36_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 6.710e-19
Identity = 62/218 (28.44%), Postives = 105/218 (48.17%), Query Frame = 2
Query:  317 FMSLGEGSEILQVALAPGDSIVAGERSFCYRGLGLKAAEVQNPNERGAIGRALGWTMKQDK--VVKWTNEGTAPTYLGLSSPLPGKVIPVDLRQA-GAILTKPQMFLCSVTDNQVTTQNLKLTPEGPFPVYHVDLRKVVGSGMCYIQAGGAAVQKTLGRGEAMMVEMGCVVAFAEKCKIVAEQRTGFIREPPYSQG-FNVKITGPGTVFLQSSHVGRL 958
            +   G+  +++++ L PG+ I A   +  Y   G+        N  G + R L      +   +  +  EG+   ++   +P PGK++P+DL Q  G+ + +   FLC+    ++  +  K    G F      L+++ G GM +I AGG  ++K L  GE + V+ GC+V F +  K   +   GF       +G F  K+TGPGT++LQS    RL
Sbjct:    7 YKIFGDDMQLVEIELDPGEGIRAEVGAMMYMEDGI----AMQTNTGGGLFRGLKRAFAGESFFITNFVQEGSGKGHVAFGAPYPGKILPIDLIQFNGSFICQKDSFLCAANGIEIEIEFTKRIGTGLFGGEGFILQRLEGHGMAFIHAGGTVIEKHLEPGETLRVDTGCIVGFQKTVKYDIQFVGGFKNALFGGEGMFLAKLTGPGTIYLQSLPFSRL 220          
BLAST of mRNA_H-paniculata_contig183.4477.1 vs. uniprot
Match: A0A4U7JC59_9FIRM (TIGR00266 family protein n=1 Tax=Ruminiclostridium herbifermentans TaxID=2488810 RepID=A0A4U7JC59_9FIRM)

HSP 1 Score: 95.9 bits (237), Expect = 9.530e-19
Identity = 66/221 (29.86%), Postives = 108/221 (48.87%), Query Frame = 2
Query:  317 FMSLGEGSEILQVALAPGDSIVAGERSFCYRGLGLKAAEVQNPNERGAI-GRALGWTMKQDKVVKWTNEGTAPTYLGLSSPLPGKVIPVDLRQAG-AILTKPQMFLCSVTDNQVTTQNLKLTPEGPFPVYHVDLRKVVGSGMCYIQAGGAAVQKTLGRGEAMMVEMGCVVAFAEKCKIVAEQRTGFIREPPYSQG-FNVKITGPGTVFLQSSHVGRLCQSM 970
            +  +G+  +I+++ L P + + A   +  Y    +    +Q   + GA+ G     T +   +  + N GT   ++  S+P PGK+IP+DL   G + L +   FLC     +V     +    G F      L+K+VG GM +I AGG  ++K L  G+ + V+ GC+VAF+       +   GF       +G F  K+TGPGTV+LQS  + RL   +
Sbjct:    7 YKIIGDDMQIVEIELDPSEGVRAEAGAMMYTDQNIV---MQTSTQGGALKGFKRMLTGESFFITTFYNTGTQKEHVAFSAPYPGKIIPIDLASVGGSFLCQKDAFLCCANGVEVEVAFTRKLGAGFFGGEGFILQKLVGDGMAFIHAGGTIIRKDLMPGQTLKVDTGCLVAFSPTVDYDIQFVGGFKNALFGGEGVFLAKMTGPGTVYLQSLPLARLADRL 224          
BLAST of mRNA_H-paniculata_contig183.4477.1 vs. uniprot
Match: A0A6P5FUF8_ANACO (Altered inheritance of mitochondria protein 24, mitochondrial n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5FUF8_ANACO)

HSP 1 Score: 95.9 bits (237), Expect = 1.510e-18
Identity = 70/237 (29.54%), Postives = 111/237 (46.84%), Query Frame = 2
Query:  317 FMSLGEGSEILQVALAPGDSIVAGERSFCYRGLGLKAAEVQNPNERGAIGRALGWTMKQDKVVKWTNEGTAPTYLGLSSPLPGKVIPVDLRQAGA-ILTKPQMFLCSVTDNQVTT---QNLKLTPEGPFPVYHVDLRKVVGSGMCYIQAGGAAVQKTLGRGEAMMVEMGCVVAFAEKCKIVAEQRTGFIREPPYS--QGFNVKITGPGTVFLQSSHVGRLCQSMAVERALVRPAMGD 1009
            F  LG  S+I+Q+ L   + + A   + CY    ++      P   G + + L    K    + + N G    Y+G+++P P +++P+DL   G  IL +P  FLCSV D  VT    Q  +    G   +    LR   G G+ ++  GG+ VQK LG GE ++V++  +VA         +     +R   +         +TGPG VF+QS    RL Q +A  RA+  P++ D
Sbjct:   25 FQILGGDSQIVQIMLKSQEKVTAKPGTLCYMSGSIQMDNNYLPENEGGVWQWLFG--KSLTSIVFFNPGPEDGYVGIAAPSPARILPIDLANLGGEILCQPDAFLCSVNDVAVTNTVDQRARNIEVGAEVILKQKLR---GQGLAFLVGGGSVVQKILGVGEVVVVDVASIVAMTTAINFHLKNSNA-VRRAVFGGDNQLTATLTGPGVVFIQSLPFQRLSQRIA--RAVAAPSLRD 253          
BLAST of mRNA_H-paniculata_contig183.4477.1 vs. uniprot
Match: A0A521RJ11_9GAMM (TIGR00266 family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521RJ11_9GAMM)

HSP 1 Score: 94.7 bits (234), Expect = 2.380e-18
Identity = 66/213 (30.99%), Postives = 103/213 (48.36%), Query Frame = 2
Query:  329 GEGSEILQVALAPGDSIVAGERSFCYRGLGLKAAEVQNPNERGAI-GRALGWTMKQDKVVKWTNEGTAPTYLGLSSPLPGKVIPVDLRQ-AGAILTKPQMFLCSVTDNQVTTQNLKLTPEGPFPVYHVDLRKVVGSGMCYIQAGGAAVQKTLGRGEAMMVEMGCVVAFAEKCKIVAEQRTGFIREPPYSQG-FNVKITGPGTVFLQSSHVGRL 958
            G+  ++++V L PG+ + A   +  Y   G+   E+Q     G   G     T +   +  + N G A   +  ++P PGK++P DL    G +L +   FLC+    ++     K    G F      L+K+ G+GM ++ AGG  ++K L  GE + V+ GC+VAFA       +   GF       +G F  K+TGPGTV+LQS    RL
Sbjct:   11 GDDLQLVEVELDPGEGVRAEAGTMTYMEQGI---EMQTDTGGGVFQGFKRMLTGESFFITTFMNSGKAKRRVAFAAPYPGKIVPFDLDSFGGQVLCQKDSFLCAARGTEIEIAFTKKIGAGLFGGEGFILQKLSGNGMVFVHAGGTVIRKDLAAGEELRVDTGCLVAFAMTVDYDIQFIGGFKNALFGGEGLFLAKMTGPGTVYLQSLPFSRL 220          
BLAST of mRNA_H-paniculata_contig183.4477.1 vs. uniprot
Match: B7KDN9_GLOC7 (Uncharacterized protein n=1 Tax=Gloeothece citriformis (strain PCC 7424) TaxID=65393 RepID=B7KDN9_GLOC7)

HSP 1 Score: 92.4 bits (228), Expect = 1.010e-17
Identity = 61/216 (28.24%), Postives = 104/216 (48.15%), Query Frame = 2
Query:  317 FMSLGEGSEILQVALAPGDSIVAGERSFCYRGLGLKAAEVQNPNERGAIGRALGWTMKQDKVVKWTNEGTAPTYLGLSSPLPGKVIPVDLRQ-AGAILTKPQMFLCSVTDNQVTTQNLKLTPEGPFPVYHVDLRKVVGSGMCYIQAGGAAVQKTLGRGEAMMVEMGCVVAFAEKCKIVAEQRTGFIREPPYSQG-FNVKITGPGTVFLQSSHVGRL 958
            +   G+  +++++ L  G+ + A   +  Y   G++              RAL    +   +  + N GT    +  ++P PGK+IP+ L Q  G  + +   F+C+    ++  +  K    G F      L+++ G G+ +I AGGA V+K L  GE + V+ GCVVAF+   +   E   GF       +G F  K+TGPGT++LQS  + +L
Sbjct:    7 YQIYGDDLQLVEITLDLGEGVRAEAGAMAYLEQGIEMQTSTGGGFLAGFKRALAG--EGFFITNFANRGTRRAKVAFAAPYPGKIIPLQLGQLGGTFICQKDAFICAAKGIEIDVEFTKRLGTGFFGGEGFILQRLQGDGLAFIHAGGALVEKRLMSGEDIRVDTGCVVAFSPTVRYEIEMVKGFKNVLFGGEGLFLAKLTGPGTIYLQSLPLSKL 220          
BLAST of mRNA_H-paniculata_contig183.4477.1 vs. uniprot
Match: A0A2A2YE86_9BACT (TIGR00266 family protein n=2 Tax=Verrucomicrobiae TaxID=203494 RepID=A0A2A2YE86_9BACT)

HSP 1 Score: 93.6 bits (231), Expect = 2.020e-17
Identity = 71/226 (31.42%), Postives = 114/226 (50.44%), Query Frame = 2
Query:  317 FMSLGEGSEILQVALAPGDSIVAGERSFCYRGLGL----KAAEVQNPNERGAIGRALG-----WTMKQDKVVKWTNEGTAPTYLGLSSPLPGKVIPVDLRQAGA-ILTKPQMFLCSVTDNQVTTQNLKLTPEGPFPVYHVDLRKVVGSGMCYIQAGGAAVQKTLGRGEAMMVEMGCVVAFAEKCKIVAEQRTGFIREPPYS-QG-FNVKITGPGTVFLQSSHVGRL 958
            F  LGE  +++++ L PG+++VA   +  Y   G+    K  +   P+  G +G+ +       T +   +  +TN G     +  +SP PG +IPVDL Q G  +L +   FLC+    Q+     K    G F      L+++ G GM +I AGG  V+K L +GE ++V+ GC+VAF  +     E R G ++   +  +G F   + G GTV+LQS   GR+
Sbjct:   80 FTILGESMQMVEIELDPGETVVAEAGAMNYMEDGIAFETKMGDGSQPDS-GFMGKLMAVGKRALTGESLFMTHFTNRGAGKKTVAFASPYPGTIIPVDLSQLGGELLCQRDAFLCAAMGTQIGMAFNKKLGAGLFGGEGFILQRLNGDGMAFIHAGGMVVRKEL-KGEKLLVDTGCLVAFTNQINYSIE-RAGNLKSMVFGGEGLFLATLQGHGTVWLQSLPFGRM 302          
BLAST of mRNA_H-paniculata_contig183.4477.1 vs. uniprot
Match: UPI0003FAF81A (TIGR00266 family protein n=1 Tax=Desulfovibrio inopinatus TaxID=102109 RepID=UPI0003FAF81A)

HSP 1 Score: 92.0 bits (227), Expect = 2.130e-17
Identity = 64/217 (29.49%), Postives = 102/217 (47.00%), Query Frame = 2
Query:  317 FMSLGEGSEILQVALAPGDSIVAGERSFCYRGLGLKAAEVQNPNERGAI-GRALGWTMKQDKVVKWTNEGTAPTYLGLSSPLPGKVIPVDL-RQAGAILTKPQMFLCSVTDNQVTTQNLKLTPEGPFPVYHVDLRKVVGSGMCYIQAGGAAVQKTLGRGEAMMVEMGCVVAFAEKCKIVAEQRTGFIREPPYSQG-FNVKITGPGTVFLQSSHVGRL 958
            +  LG+  +++++ L PG+++ A   +  Y     +   +Q     G   G     T +   +  + N G +   +   +P PGK+IP+DL R  G  L +   +LCS     +     K    G F      L+++ G G+ +I AGG+ V+KTLG GE + V+ GC+    ++     E   GF       +G F   +TGPGTVFLQS    RL
Sbjct:    7 YQILGDDMQLVEIELDPGEAVRAETGAMMYM---TRDIAMQTSTGGGLFKGFKRMLTGESFFITTFLNAGNSKAMVAFGAPYPGKIIPLDLARFGGHFLCQKDAYLCSAQGIDIEVAFTKKLGAGLFGGEGFILQRLTGDGLAFIHAGGSIVEKTLGPGEVLRVDTGCLAGLEDRVDYDIEFVGGFKNALFGGEGLFLATLTGPGTVFLQSLPFSRL 220          
BLAST of mRNA_H-paniculata_contig183.4477.1 vs. uniprot
Match: A0A316CV55_9BACT (Uncharacterized protein (TIGR00266 family) n=1 Tax=Oceanotoga teriensis TaxID=515440 RepID=A0A316CV55_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 2.170e-17
Identity = 60/218 (27.52%), Postives = 106/218 (48.62%), Query Frame = 2
Query:  317 FMSLGEGSEILQVALAPGDSIVAGERSFCYRGLGLKAAEVQNPNERGAIGRALG--WTMKQDKVVKWTNEGTAPTYLGLSSPLPGKVIPVDLRQA-GAILTKPQMFLCSVTDNQVTTQNLKLTPEGPFPVYHVDLRKVVGSGMCYIQAGGAAVQKTLGRGEAMMVEMGCVVAFAEKCKIVAEQRTGFIREPPYSQG-FNVKITGPGTVFLQSSHVGRL 958
            +  +G+  +++++ L PG+ + A   +  Y    ++   +   N  G + R L   +T +   +  +   G+   ++   +P PGK++P++L    G  + +   FLC+    ++  +  K    G F      L+++ G GM +I AGGA V+K L  GE + V+ GC+V F+       E   GF       +G F  K++GPGTV+LQS    RL
Sbjct:    7 YKIVGDDMQLVEIELDPGEGVRAEAGAMMY----MENDIMMQTNTGGGLFRGLKRMFTGESFFITNFVQNGSGKGHVAFGAPYPGKIVPLNLTDFNGTFICQKDSFLCAANGIEIEIELTKKIGTGLFGGEGFILQRLQGHGMAFIHAGGALVEKQLNAGEILKVDTGCIVGFSNSIHYDIEFIGGFKNALFGGEGMFLAKLSGPGTVYLQSLPFSRL 220          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig183.4477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIZ3_ECTSI5.120e-8856.25Altered inheritance of mitochondria protein 24, mi... [more]
A0A7Y5PVV1_9PLAN5.490e-1929.86TIGR00266 family protein n=1 Tax=Planctomycetaceae... [more]
A0A2K1NT36_9BACT6.710e-1928.44Uncharacterized protein n=1 Tax=Petrotoga sp. 9PWA... [more]
A0A4U7JC59_9FIRM9.530e-1929.86TIGR00266 family protein n=1 Tax=Ruminiclostridium... [more]
A0A6P5FUF8_ANACO1.510e-1829.54Altered inheritance of mitochondria protein 24, mi... [more]
A0A521RJ11_9GAMM2.380e-1830.99TIGR00266 family protein n=1 Tax=Gammaproteobacter... [more]
B7KDN9_GLOC71.010e-1728.24Uncharacterized protein n=1 Tax=Gloeothece citrifo... [more]
A0A2A2YE86_9BACT2.020e-1731.42TIGR00266 family protein n=2 Tax=Verrucomicrobiae ... [more]
UPI0003FAF81A2.130e-1729.49TIGR00266 family protein n=1 Tax=Desulfovibrio ino... [more]
A0A316CV55_9BACT2.170e-1727.52Uncharacterized protein (TIGR00266 family) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig183contigH-paniculata_contig183:16396..20183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score117.9
Seed ortholog evalue7.7e-24
Seed eggNOG ortholog88036.EFJ34258
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial biogenesis AIM24
EggNOG OGs2QVFQ@2759,37M7G@33090,3GGP2@35493,COG2013@1
Ec32 ortholog descriptionTryptophan RNA-binding attenuator protein-like domain
Ec32 orthologEc-07_005040.1
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons5
Model size1400
Cds size831
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929421.7071855-UTR-H-paniculata_contig183:16395..167201622929421.7071855-UTR-H-paniculata_contig183:16395..16720Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig183 16396..16720 -
1691480854.1548994-UTR-H-paniculata_contig183:16395..167201691480854.1548994-UTR-H-paniculata_contig183:16395..16720Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig183 16396..16720 -
1622929421.7875483-UTR-H-paniculata_contig183:19939..201831622929421.7875483-UTR-H-paniculata_contig183:19939..20183Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig183 19940..20183 -
1691480854.2129898-UTR-H-paniculata_contig183:19939..201831691480854.2129898-UTR-H-paniculata_contig183:19939..20183Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig183 19940..20183 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929421.7205045-CDS-H-paniculata_contig183:16720..168811622929421.7205045-CDS-H-paniculata_contig183:16720..16881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 16721..16881 -
1691480854.1681252-CDS-H-paniculata_contig183:16720..168811691480854.1681252-CDS-H-paniculata_contig183:16720..16881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 16721..16881 -
1622929421.7326677-CDS-H-paniculata_contig183:17363..175251622929421.7326677-CDS-H-paniculata_contig183:17363..17525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 17364..17525 -
1691480854.1761117-CDS-H-paniculata_contig183:17363..175251691480854.1761117-CDS-H-paniculata_contig183:17363..17525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 17364..17525 -
1622929421.7456522-CDS-H-paniculata_contig183:17822..179411622929421.7456522-CDS-H-paniculata_contig183:17822..17941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 17823..17941 -
1691480854.1853716-CDS-H-paniculata_contig183:17822..179411691480854.1853716-CDS-H-paniculata_contig183:17822..17941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 17823..17941 -
1622929421.7597222-CDS-H-paniculata_contig183:18611..187641622929421.7597222-CDS-H-paniculata_contig183:18611..18764Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 18612..18764 -
1691480854.1942365-CDS-H-paniculata_contig183:18611..187641691480854.1942365-CDS-H-paniculata_contig183:18611..18764Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 18612..18764 -
1622929421.7702928-CDS-H-paniculata_contig183:19703..199391622929421.7702928-CDS-H-paniculata_contig183:19703..19939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 19704..19939 -
1691480854.2028372-CDS-H-paniculata_contig183:19703..199391691480854.2028372-CDS-H-paniculata_contig183:19703..19939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 19704..19939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig183.4477.1prot_H-paniculata_contig183.4477.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig183 16721..19939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig183.4477.1

>prot_H-paniculata_contig183.4477.1 ID=prot_H-paniculata_contig183.4477.1|Name=mRNA_H-paniculata_contig183.4477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp
MAANGNNTEAAAPLVEAAATASPRFMSLGEGSEILQVALAPGDSIVAGER
SFCYRGLGLKAAEVQNPNERGAIGRALGWTMKQDKVVKWTNEGTAPTYLG
LSSPLPGKVIPVDLRQAGAILTKPQMFLCSVTDNQVTTQNLKLTPEGPFP
VYHVDLRKVVGSGMCYIQAGGAAVQKTLGRGEAMMVEMGCVVAFAEKCKI
VAEQRTGFIREPPYSQGFNVKITGPGTVFLQSSHVGRLCQSMAVERALVR
PAMGDAWKGATLLVVIVAVLLVFFEV*
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mRNA from alignment at H-paniculata_contig183:16396..20183-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig183.4477.1 ID=mRNA_H-paniculata_contig183.4477.1|Name=mRNA_H-paniculata_contig183.4477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3788bp|location=Sequence derived from alignment at H-paniculata_contig183:16396..20183- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAGCGTTGACCTTGCAGAGAAGACCTCACCTGGAACCTCCTTGCGAAT AATCTCCCTGCGTTCAACCTCCTCCTCTCACTTTATTCTTTTTGCTGCAC TGTTGTGCACGGATTTTCACTGCTTCCAGCTGCAAAAACTGTGAGAAGTT TCGCGGTTCGCTATCTATGAGCAACCAAATGCTGTAACTTGAGCAGAGCT GTGTGCAGTGCATAAAGCGGTTCAAATTCAAGGAGAAAGACGATATGGCA GCGAACGGAAACAACACAGAAGCTGCTGCTCCTCTCGTGGAGGCAGCAGC AACTGCATCTCCGCGATTTATGTCGCTTGGAGAAGGCAGTGAAATTTTGC AGGTGGCGCTTGCCCCAGGAGACTCTATCGTTGCGGGCGAACGATCGTTT TGTTACCGAGGTTTGGGTCTTAAAGCTGCGGAGGTGCAGAACCCGAACGA GAGAGGAGCGATAGGAAGGGCTTTAGGATGGTGAGATACCAATCGTACAT GGATTAGCACTCAATAACAGGCTAGTCTAGTGTAGTGATTGCTGTGAGGG CACCATACTGCTGTGGCCTCTATAGGAAGTGCACGCATTTTTTTCGTTCC CTCGCCAACACGGAAAATCCTACTGCAACTTGGGCAAGCATATAGAATTG TAAACTGTACTGCTGCCTACACTGCACAACTCTATCATAGTTGTACCACT ATCAATATCAGATCAACAGATATGTACGAAAAAGACGCGCTATTTACCTG AAACGCGATCCACGTGGACGATTTAAACTAGGACCACGTTAAAGCCCATA TTGATTGTAATAGAGGAAAGATATTTGATCTTTTAAATGAAACCCGATGT GATGCGTCATACTTCGACTATGATGGCAGGCGTCCCGTCCGTAAGTACTG GAGTATAACACTAGTACTGTAGTGGATCTCAATTTACGAAAGTGGCGACA GGGAAGAGTGCCGAGACAATGCCGCTTGGCGCATCACTTGAACGGAAGGA AATCCGTGCGCGTTAACTTGTACATTGTATATGTATTCACGTGGTATCGT GGTGTTTGATAATGCACATGATACCACATATGCGTCTGCGAGGGAATTGC GTAATGCATCAAGGTCAATAATGACTGGCTCGCGTTCGAAGGGTGCACTC GACGGCCACCGCGAATTTCACGATGCCGACTGCAGTAGGTATTTTGGCCT GTGTTGATACGTTCTCTCTTGAGCCTGCGGGGTTTGCGCCGCCATGAACA CGCTGACATTTTTTCGTAGTTCCGCAATGTGCTGTAGGAGGGTAAAGCCA CCCTTCTGCGCTGCTGAAGCTAGTGCTCGAGCACGGTGTTTACATGGCCC CTTTCGACCCCCGCTGGTCTGTGCTGCTCCGTGCGTATGTGTCCCGCTAA TCGATGAAACAATTCAAAGGACAATGAAACAAGACAAGGTGGTCAAATGG ACAAACGAAGGCACGGCGCCGACCTACTTGGGGTTGTCCTCGCCGTTGCC TGGCAAGGTCATTCCCGTCGATTTGCGACAAGCCGGTGCCATCCTCACTA AGCCACAAATGTTCCTGTGCAGGTATTCAATTGCACTCAACTACGGAGCA GAATATTATATGCCGTCTACGGCTTGGTGCTCATTAATGTGTCAGAGGTC GACTGACCTGGAAGCGATGTTACGAGTGCTCGTTGTGTTTACCGTACTAT GAGCGTAAGCGAGCCACGGCGAGCGCAGCGAGTCCATGTATTTAGAGCGA AACTTTAATGTTAAATGTGCATACATGCAAGCGTAAGTGGGTCACGGCAA GGGCGCGAGTCAGTGTGCGTCGGCTAGAGGTACAGCGACATCGTCGAGGT CGTCGACATTGTCACCCCCACTGGTGTAGCCGTAGACTGTCTACAACTGT ATTCCTAGTAGGAGGGAGGCTTTTTACCGAGGACTATTGGGGCGTAGGCA TGGCAGCGAAGACGTTTGTAGGCAGATGAAGATACTAAGCGTCACGAAAC GGGTGACGTTCTGTGCAAAAATTATGCTGCTATCAGTGCAACTACTATTT GCCCGTCTGATGCAGCGTGTATTCCCATCTCTGTGAAAGCTTTAATCTGC TTGCAAGAACCAGGGCGAACTCATACTTCTAACCAGTTTTGCTCAAGGAT TGAATGTCTCAAAAATGGCACAATGTATCTGATCCTGCTTGTGTTGGTTT CCTTTCCTTTTGCAACGTTTGCCTTTATTCGTTCGTGTTCAGTGTAACAG ACAATCAAGTGACTACCCAAAACTTGAAACTTACTCCGGAGGGCCCGTTT CCTGTATACCACGTGGATCTGCGCAAGGTAGTGGGATCTGGCATGTGCTA CATCCAAGCAGGTGCGCTCGTCATGATAACACGTCCCCTCAAGTCTCGAA GAGACCGAGACGTGTTCTTATGACAAAATGACCGAGCTGTTCAGAGTGGT TCGTTTCGTGTGCGGCCCGACGCAAAATTTGCCAATATATACTTTTCGCG TTTCGCACGGTTTGCGAAAAAGAAAAAAACGTCCATCTTGTCGCCGAGAT ATTTGGCACCAGCGCACTTTTATGCGTAGAGACCGTGGGCTTCATAGACA TTGCTCTGCTGTGATTCTAGTGACAATGGCTTATACTTGTTTTGCCATAA TCACCAAGGCGGAGCTGCTGTACAAAAAACTCTTGGACGCGGGGAAGCGA TGATGGTAGAAATGGGTTGCGTCGTAGCATTTGCTGAGAAGTGCAAGATC GTGGCAGAGCAACGGACTGGGTTCATTCGCGAGCCGCCCTACTCACAAGG CTTCAATGTCAAAATTACAGGTGGGTTGGGTAGCTATTCCGTGGTAGCTC TCTGAGTAAGCTCAAGCTCGACTCAGTAAACCGTTACTTCGTCAGTACTC GAGCAGTGCCTTGCAGTGAATGACATATCATCGCTTGTCATGATCAGGCC GGTGAAATCATGAGATATGAAGACAATCGTGGTACGAATTGGCAGCGTCT CCATCCAGATCACAGCTGCAATCAATGGCAGCAAGTGTAAGGAGGGCTTC AATGGACAGAGGTTTGCGTGTGTAAGGGGCCATGGATCCCATATCCTCTT CACGATTTCCCTATGAAGGGTTCAAAGCTTTTTGATGGAATTGATGAAAT ATGGTATAATGCCCACGAGAAGACCCTTGAATAGCCAATGATAGCAAGAA TATCCAAAATTCGTATGCTAAGTACAACTGTTCCAGCACGTTGTGCAACC TCGCGGTTGTTCTTTTTGTCGAAACAACGCCGGCCGTGTGATGATACTGC AGGTCCGGGGACGGTGTTCTTACAGTCGTCACACGTGGGAAGGTTGTGCC AATCGATGGCGGTGGAGCGAGCGCTGGTTCGACCCGCGATGGGGGATGCA TGGAAAGGAGCAACACTGCTCGTGGTTATTGTGGCGGTCTTGTTGGTGTT CTTCGAGGTTTAGCGAGGTTTAGCGTTGCCGACGCCTTCCATTTTCAGCT GAGAGGAATAGCTGCGTTGCCACTGCGTTTGCAATCTGTACAATTTTGAA GAGCCAAATAGAGAACCGTACTGTACTGTACTCTGTAGAAAAATTACAGT TTTCGCAGTGATCGCTCGCTTCTCGCGGTGAAGCGTGCATGATGCTACAG ACGGCTCTCTGTACTGTAGCGGGTGAACTCTGCGCATAACAAGTGCGTGC GACGTGTGATAAATGGTGGTGCTTGTTTTGCACTTTTGTTTTTCATGTAT CCATTAACAACTGCTTGAAATCCATCCCGTGACCCCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig183:16396..20183-

>mRNA_H-paniculata_contig183.4477.1 ID=mRNA_H-paniculata_contig183.4477.1|Name=mRNA_H-paniculata_contig183.4477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig183:16396..20183- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGCGAACGGAAACAACACAGAAGCTGCTGCTCCTCTCGTGGAGGC
AGCAGCAACTGCATCTCCGCGATTTATGTCGCTTGGAGAAGGCAGTGAAA
TTTTGCAGGTGGCGCTTGCCCCAGGAGACTCTATCGTTGCGGGCGAACGA
TCGTTTTGTTACCGAGGTTTGGGTCTTAAAGCTGCGGAGGTGCAGAACCC
GAACGAGAGAGGAGCGATAGGAAGGGCTTTAGGATGATGGCAGCGAACGG
AAACAACACAGAAGCTGCTGCTCCTCTCGTGGAGGCAGCAGCAACTGCAT
CTCCGCGATTTATGTCGCTTGGAGAAGGCAGTGAAATTTTGCAGGTGGCG
CTTGCCCCAGGAGACTCTATCGTTGCGGGCGAACGATCGTTTTGTTACCG
AGGTTTGGGTCTTAAAGCTGCGGAGGTGCAGAACCCGAACGAGAGAGGAG
CGATAGGAAGGGCTTTAGGATGGACAATGAAACAAGACAAGGTGGTCAAA
TGGACAAACGAAGGCACGGCGCCGACCTACTTGGGGTTGTCCTCGCCGTT
GCCTGGCAAGGTCATTCCCGTCGATTTGCGACAAGCCGGTGCCATCCTCA
CTAAGCCACAAATGTTCCTGTGCAGGACAATGAAACAAGACAAGGTGGTC
AAATGGACAAACGAAGGCACGGCGCCGACCTACTTGGGGTTGTCCTCGCC
GTTGCCTGGCAAGGTCATTCCCGTCGATTTGCGACAAGCCGGTGCCATCC
TCACTAAGCCACAAATGTTCCTGTGCAGTGTAACAGACAATCAAGTGACT
ACCCAAAACTTGAAACTTACTCCGGAGGGCCCGTTTCCTGTATACCACGT
GGATCTGCGCAAGGTAGTGGGATCTGGCATGTGCTACATCCAAGCAGTGT
AACAGACAATCAAGTGACTACCCAAAACTTGAAACTTACTCCGGAGGGCC
CGTTTCCTGTATACCACGTGGATCTGCGCAAGGTAGTGGGATCTGGCATG
TGCTACATCCAAGCAGGCGGAGCTGCTGTACAAAAAACTCTTGGACGCGG
GGAAGCGATGATGGTAGAAATGGGTTGCGTCGTAGCATTTGCTGAGAAGT
GCAAGATCGTGGCAGAGCAACGGACTGGGTTCATTCGCGAGCCGCCCTAC
TCACAAGGCTTCAATGTCAAAATTACAGGCGGAGCTGCTGTACAAAAAAC
TCTTGGACGCGGGGAAGCGATGATGGTAGAAATGGGTTGCGTCGTAGCAT
TTGCTGAGAAGTGCAAGATCGTGGCAGAGCAACGGACTGGGTTCATTCGC
GAGCCGCCCTACTCACAAGGCTTCAATGTCAAAATTACAGGTCCGGGGAC
GGTGTTCTTACAGTCGTCACACGTGGGAAGGTTGTGCCAATCGATGGCGG
TGGAGCGAGCGCTGGTTCGACCCGCGATGGGGGATGCATGGAAAGGAGCA
ACACTGCTCGTGGTTATTGTGGCGGTCTTGTTGGTGTTCTTCGAGGTTTA
GGTCCGGGGACGGTGTTCTTACAGTCGTCACACGTGGGAAGGTTGTGCCA
ATCGATGGCGGTGGAGCGAGCGCTGGTTCGACCCGCGATGGGGGATGCAT
GGAAAGGAGCAACACTGCTCGTGGTTATTGTGGCGGTCTTGTTGGTGTTC
TTCGAGGTTTAG
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