mRNA_H-paniculata_contig18281.4470.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18281.4470.1
Unique NamemRNA_H-paniculata_contig18281.4470.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18281.4470.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 229 bits (584), Expect = 7.860e-68
Identity = 141/382 (36.91%), Postives = 207/382 (54.19%), Query Frame = 1
Query:    4 ALVKNGTWESEEPGRLPVRRKAIRTKWIFKWKLKKDGSVARYKARLVAQGFS*VESEDFFESNAPVARVSTLRTVFSLNAEHDFELEGMDVDAACLSVPVEEELFVKLPRDIFLSPETYYLCPACVKACMASSRPAETGITI----LTIFFVPLPTHACTSLATKGERDIFVVAYVDDLVIA-GRREKVDEFKHNISRRFRMKDLGSLSHLLGIEVRRDRRNGTISISQGGYIREVLKRCGFDECRGSPTPVDRKLNI---LARDSGRNGNSSE---YRGTVGSLIYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRHLSSVPDLGITFGGKSNGHGLEGFVNADWVEDVEDRKSTTGYVFKLKGGAIRWCSRKQQ 1116
            +L KN TWE      LP  RKAI +KW+FK K   +G + RYKARLVA+GF      DF E+ APVA+ +++R + S+ A++   L  MDV  A L+  +EEE+++K P     +    ++C            P     TI      I F    T  C  +    +  IFVV YVDDL++A    + +   K  +S RF M DLG L + LG+EV RD ++G +S+ Q  ++  VL + G  +C+   TP D  L +   +     ++ ++ +   YR  VG+++Y   GTRPD+A AV   ++   DPC   +   KR+ R+L + P  GI F G  +G  L G+ +ADW  D+E R+ST+GYVF L GG I W S+KQ+
Sbjct:   19 SLCKNKTWELVP---LPRGRKAISSKWVFKVKETVEGLIERYKARLVAKGFLQKYGVDFEETFAPVAKFASIRIILSIAAQYKLVLHQMDVKTAFLNGLLEEEIYMKQPNGFVDAKYPDHVCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDDKAMIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQDPGLKLTKAMCEGGCKHDDTMQGVPYRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRFAGSGDGE-LIGYSDADWAGDIETRRSTSGYVFVLNGGCITWRSKKQR 396          
BLAST of mRNA_H-paniculata_contig18281.4470.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT)

HSP 1 Score: 233 bits (594), Expect = 2.940e-67
Identity = 137/377 (36.34%), Postives = 208/377 (55.17%), Query Frame = 1
Query:    4 ALVKNGTWESEEPGRLPVRRKAIRTKWIFKWKLKKDGSVARYKARLVAQGFS*VESEDFFESNAPVARVSTLRTVFSLNAEHDFELEGMDVDAACLSVPVEEELFVKLPRDIFLSPETYYLCPACVKACMASSRP----AETGITILTIFFVPLPTHACTSLATKGERDIFVVAYVDDLVIAGRRE-KVDEFKHNISRRFRMKDLGSLSHLLGIEVRRDRRNGTISISQGGYIREVLKRCGFDECRGSPTPVD--RKLNILARDSGRNGNSSEYRGTVGSLIYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRHLSSVPDLGITFGGKSNGHGLEGFVNADWVEDVEDRKSTTGYVFKLKGGAIRWCSRKQ 1113
            +L  N  W   E   LP  RKA+ +KW+F+ K   DG+V  +KARLVAQGFS    +D+ E+ +PVAR  ++RTV +L A+H  +L  MDV  A L+  ++EE+++K P       + + +C      C     P    +     +  + FV      C  +  +G     +  YVDD+++AG+ + K++E K  ++ +F+MKD+G   + LG++V +   +  I I Q  Y + VL+R G +  + + TPV+   KL   A DS R  +   Y+  VG L+Y ST TRPDIAYAV   AR    P  E +   KRI R+L+   D+G+ + G        G+ +ADW  D++DRKST+GYVF++   AI W S+KQ
Sbjct:  155 SLKTNEVWNLVE---LPENRKAVGSKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFIDKGKEHLVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYVKEEGGEIFIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRV-DQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQ 527          
BLAST of mRNA_H-paniculata_contig18281.4470.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 230 bits (587), Expect = 7.970e-66
Identity = 138/385 (35.84%), Postives = 209/385 (54.29%), Query Frame = 1
Query:    4 ALVKNGTWESEEPGRLPVRRKAIRTKWIFKWKLKKDGSVARYKARLVAQGFS*VESEDFFESNAPVARVSTLRTVFSLNAEHDFELEGMDVDAACLSVPVEEELFVKLPRDIFLSPETYYLC------------PACVKACMASSRPAETGITILTIFFVPLPTHACTSLATKGERDIFVVAYVDDLVIAGRRE-KVDEFKHNISRRFRMKDLGSLSHLLGIEVRRDRRNGTISISQGGYIREVLKRCGFDECRGSPTPVD--RKLNILARDSGRNGNSSEYRGTVGSLIYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRHLSSVPDLGITFGGKSNGHGLEGFVNADWVEDVEDRKSTTGYVFKLKGGAIRWCSRKQ 1113
            +L  N  W   E   LP  RKA+ +KW+F+ K   DG+V  +KARLVAQGFS    +D+ E+ +PVAR  ++RTV +L A+H  +L  MDV  A L+  ++EE+++K         + + +C            P C  + +           +  + FV      C  +  +G     +  YVDD+++AG+ + K++E K  ++ +F+MKD+G L + LG++V     +  I I Q  Y + VL+R G +  + + TPV+   KL   A DS R  +   Y+  VG L+Y ST TRPDIAYAV   AR   DP  E +   KRI R+L+   D+G+ + G        G+ +ADW  D++DRKST+GYVF++   AI W S+KQ
Sbjct:    7 SLKTNEVWNLVE---LPENRKAVGSKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQTEGFIEKGKEHLVCRLRRSIYGLKQSPRCWNSVLDRK--------LKNMGFVQTTGDPCIYVKEEGGEIFIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRV-DQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQ 379          
BLAST of mRNA_H-paniculata_contig18281.4470.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 228 bits (581), Expect = 3.030e-65
Identity = 134/378 (35.45%), Postives = 221/378 (58.47%), Query Frame = 1
Query:    4 ALVKNGTWESEEPGRLPVRRKAIRTKWIFKWKLKKDGSVARYKARLVAQGFS*VESEDFFESNAPVARVSTLRTVFSLNAEHDFELEGMDVDAACLSVPVEEELFVKLPRDIFLSPETYYLCPACVKACMASSRPAETGITIL-----TIFFVPLPTHACTSLATKGERDIFVVA-YVDDLVIAGRR-EKVDEFKHNISRRFRMKDLGSLSHLLGIEVRRDRRNGTISISQGGYIREVLKRCGFDECRGSPTPVDRKLNIL-ARDSGRNGNSSEYRGTVGSLIYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRHLSSVPDLGITFGGKSNGHGLEGFVNADWVEDVEDRKSTTGYVFKLKGGAIRWCSRKQ 1113
            +L ++  WE  E   LP  RKA+  KW+FK K   DGS+ R+KARLVAQGFS     D+ E+ +PV R  ++RTV +L+ +   +L  MDV AA L+  +E+E+++K P    +  + +  C    K+     + +    ++L     +I F    +  C  +  + + +IFVVA +VDD+++AG+  EK+ + K +I+ RF++KD+G L ++LG++V ++  +  + I Q  Y   ++K+ G + C+   TPVD    ++ A +     N  E++  VGSL+Y S+ TRPDI +AV+  A+   +P  E ++  KRIFR+L    + G+ +   +N   + GF +ADW  D+ DRKST+GY F++ G A+ W S+KQ
Sbjct:  171 SLQEHDVWELTE---LPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLACKL-NKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEE-DGNIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQ 540          
BLAST of mRNA_H-paniculata_contig18281.4470.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 231 bits (589), Expect = 4.270e-64
Identity = 136/378 (35.98%), Postives = 221/378 (58.47%), Query Frame = 1
Query:    4 ALVKNGTWESEEPGRLPVRRKAIRTKWIFKWKLKKDGSVARYKARLVAQGFS*VESEDFFESNAPVARVSTLRTVFSLNAEHDFELEGMDVDAACLSVPVEEELFVKLPRDIFLSPETYYLCPACVKACMASSRPAETGITIL-----TIFFVPLPTHACTSLATKGERDIFVVA-YVDDLVIAGRR-EKVDEFKHNISRRFRMKDLGSLSHLLGIEVRRDRRNGTISISQGGYIREVLKRCGFDECRGSPTPVDRKLNIL-ARDSGRNGNSSEYRGTVGSLIYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRHLSSVPDLGITFGGKSNGHGLEGFVNADWVEDVEDRKSTTGYVFKLKGGAIRWCSRKQ 1113
            +L ++  WE  E   LP  RKA+  KW+FK K   DGS+ R+KARLVAQGFS     D+ E+ +PV R   +RTV +L+ +   +L  MDV AA L+  +E+E+++K P    +  + + +C    K+     + +    ++L     +I F    +  C  +  + + DIFVVA +VDD+++AG+  EK+ + K +I+ RF++KD+G L ++LG++V ++  +  + I Q  Y   ++K+ G + C+   TPVD    ++ A +     N  EY+  VGSL+Y S+ TRPDI +AV+  A+   +P  E ++  KRIFR+L    + G+ +   +N   + GF +ADW  D+ DRKST+GY F++ G A+ W S+KQ
Sbjct:  785 SLQEHDVWELTE---LPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFEKIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLVCKL-NKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEE-DGDIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQ 1154          
BLAST of mRNA_H-paniculata_contig18281.4470.1 vs. uniprot
Match: Q9M5J7_PICGL (Reverse transcriptase n=1 Tax=Picea glauca TaxID=3330 RepID=Q9M5J7_PICGL)

HSP 1 Score: 221 bits (563), Expect = 1.260e-63
Identity = 137/389 (35.22%), Postives = 209/389 (53.73%), Query Frame = 1
Query:    4 ALVKNGTWESEEPGRLPVRRKAIRTKWIFKWKLKKDGSVARYKARLVAQGFS*VESEDFFESNAPVARVSTLRTVFSLNAEHDFELEGMDVDAACLSVPVEEELFVKLPRDIFLSPETYYLCPACVKACMASSRPA----ETGITILTIFFVPLPTHACTSLATKGERDIFVVAYVDDLVIAGRR-EKVDEFKHNISRRFRMKDLGSLSHLLGIEVRRDRRNGTISISQGGYIREVLKRCGFDECRGSPTPVDRKLNILARDSGRNGNSSE------YRGTVGSLIYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRHLSSVPDLGITFGGKSNGHGLE------GFVNADWVEDVEDRKSTTGYVFKLKGGAIRWCSRKQQL 1119
            +L KN +W+  E   L  RRK++  KW+FK K   +G V +YKARLV +G+S VE  +F E  +PVA+++++R + S+    D E+E MDV    L   +EEE+++K P    +      +C      C     P     +    IL + FV      C      G   I+VV YVDD+++ G   + + E K  +S +F MKDLG+ + +LG++++RDR N  + ++Q  Y+  +L+R      +    P+   +N+ A    +     E      Y   VGSL+YA   TRPDIA+AV   +R M    +E ++T KR+FR+L      G+ + G+S   GL+      GFV+ADWV D++  +ST+GYVF L GGAI W S+ Q L
Sbjct:   96 SLDKNESWDIVE---LLARRKSVGRKWLFKKKFNVEGKVEKYKARLVEKGYSQVEGIEFGEIFSPVAKLTSIRFLLSIVVAFDLEVEQMDVKTTFLHGDLEEEIYMKQPEGFVVKGNKELVCKINKSLCGVKQSPRMWYQKFDTYILRLGFVISRADHCVYSKQVGNHFIYVVLYVDDMLLVGNNMDVIKEVKSQLSSKFDMKDLGAANFILGMDIKRDRANRKLWLNQRKYVETILQRFNIHGSKPVKVPIPIGVNLSADQCPKIQEEEEDMSHVPYASAVGSLMYAMVCTRPDIAHAVGFLSRYMSKLGKEHWTTVKRVFRYLHGTTSYGLCYQGRS---GLDRVVDIHGFVDADWVGDLDHIRSTSGYVFNLFGGAISWMSKIQAL 478          
BLAST of mRNA_H-paniculata_contig18281.4470.1 vs. uniprot
Match: A0A445HPU2_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445HPU2_GLYSO)

HSP 1 Score: 226 bits (575), Expect = 3.060e-62
Identity = 137/377 (36.34%), Postives = 213/377 (56.50%), Query Frame = 1
Query:    4 ALVKNGTWESEEPGRLPVRRKAIRTKWIFKWKLKKDGSVARYKARLVAQGFS*VESEDFFESNAPVARVSTLRTVFSLNAEHDFELEGMDVDAACLSVPVEEELFVKLPRDIFLSPETYYLCPACVKACMASSRPAET----GITILTIFFVPLPTHAC--TSLATKGERDIFVVAYVDDLVIAGR-REKVDEFKHNISRRFRMKDLGSLSHLLGIEVRRDRRNGTISISQGGYIREVLKRCGFDECRGSPTPVDRKLNILARDSGRNGNSSEYRGTVGSLIYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRHLSSVPDLGITFGGKSNGHGLEGFVNADWVEDVEDRKSTTGYVFKLKGGAIRWCSRKQ 1113
            ++++N TW+  +   LP   K +  K IF+ K+K DG+V +YKARLV QGF   E  DFF++ APVAR+ST+R + +L A H+  +  MDV  A L+  ++EE+++K P    +      +C            P +        +L+  FV      C  +   T G + + +  YVDD++I G  +++VDE K  +S +F MKD+G    +LGI+++R   N  ISISQ  YI ++L++  F +C    TP+D  L +L  + G   +  EY   +GSL+YA   TRPDIAYAV + +R   +P    +    R+F++L    D G+T+ G  +   +EG+ +A W+ ++ED  ST+G+VF L GGAI W S+KQ
Sbjct:  563 SIMQNNTWKLVD---LPPGCKPLGCKMIFRRKMKVDGTVDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHNLMIHQMDVKTAFLNGELDEEIYMKQPEGFVMPGNENKVCKLMKSLYGLKQAPKQWHQKFDEVVLSSGFVINQADKCLYSKFDTHG-KGVIICLYVDDMLIFGTDQDQVDETKAFLSSKFDMKDMGEADVILGIKIKRG--NNGISISQSHYIEKILEKFNFKDCSPVSTPIDPNLKLLP-NKGVAVSQLEYSRAIGSLMYAMISTRPDIAYAVAKLSRFTSNPSSHHWQAMNRVFKYLKGTIDYGLTYTGFPSV--IEGYSDASWITNMEDYSSTSGWVFLLGGGAISWASKKQ 930          
BLAST of mRNA_H-paniculata_contig18281.4470.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR)

HSP 1 Score: 214 bits (545), Expect = 2.690e-61
Identity = 134/377 (35.54%), Postives = 205/377 (54.38%), Query Frame = 1
Query:    4 ALVKNGTWESEEPGRLPVRRKAIRTKWIFKWKLKKDGSVARYKARLVAQGFS*VESEDFFESNAPVARVSTLRTVFSLNAEHDFELEGMDVDAACLSVPVEEELFVKLPRDIFLSPETYYLCPACVKACMASSRPAETGITILT-----IFFVPLPTHACTSLATKGERDIFVVAYVDDLV-IAGRREKVDEFKHNISRRFRMKDLGSLSHLLGIEVRRDRRNGTISISQGGYIREVLKRCGFDECRGSPTPVDRKLNILARDSGRNG-NSSEYRGTVGSLIYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRHLSSVPDLGITFGGKSNGHGLEGFVNADWVEDVEDRKSTTGYVFKLKGGAIRWCSRKQ 1113
            +L++N TW+  E   LP  RK I ++W+FK K   DG V RYK RLVA+G+S     D+ E+ +PV R S++RT+ S   +++  +  MDV  A L+  +EEE++++ P D ++ P   +L     K+     +         T     I F    +  C  +  + E +I  V YVDDL+ I    E + E K  + ++++MKD+G LS++LGI V +D+ N ++ + Q  YI  VL++ G D+     TP D  + +   D   N  N   Y+  VGSL+YA+  TRPDIA AV   ++    P     +  KRI R+L    +L + +  +S    L GF +ADW  D +DR+STTG +F L GGA+ W S+KQ
Sbjct:   23 SLLENETWDLVE---LPKDRKPIGSRWVFKVKHHSDGEVERYKCRLVAKGYSQNYGVDYDETFSPVVRFSSIRTLLSFAVQNNLHVHQMDVVTAFLNGHLEEEIYMEQP-DGYIKPGQEHLVCKLKKSIYGLKQSPRCWSKTFTESMKDIGFNQSTSDPCVFVRARQELEILAV-YVDDLILITESLESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADANVKLQKDDGVSNPVNPGTYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALKY-QRSESETLLGFSDADWAGDQDDRRSTTGNIFLLGGGAVSWLSKKQ 393          
BLAST of mRNA_H-paniculata_contig18281.4470.1 vs. uniprot
Match: A0A284QR55_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284QR55_ARMOS)

HSP 1 Score: 214 bits (544), Expect = 2.820e-61
Identity = 130/377 (34.48%), Postives = 207/377 (54.91%), Query Frame = 1
Query:    7 LVKNGTWESEEPGRLPVRRKAIRTKWIFKWKLKKDGSVARYKARLVAQGFS*VESEDFFESNAPVARVSTLRTVFSLNAEHDFELEGMDVDAACLSVPVEEELFVKLPRDIFLSPETYYLCPACVKACMASSRP--AETGITILTIFFVPLPTHACTSLATKGERDIFVVAYVDDL-VIAGRREKVDEFKHNISRRFRMKDLGSLSHLLGIEVRRDRRNGTISISQGGYIREVLKRCGFDECRGSPTPVD---RKLNILARDS-GRNGNSSEYRGT-VGSLIYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRHLSSVPDLGITFGGKSNGHGLEGFVNADWVEDVEDRKSTTGYVFKLKGGAIRWCSRKQ 1113
            L   GTW+ EE   LP  R  +  KW ++ K   DG + RYKARLVA+GFS +   DFFE+ APV R+ T R + ++  + +  + GMDV  A L+  ++E +++  P +              +     S R    +   T L + +  L +  C  +       I V  +VDD+ ++A   E +   K  + ++  + D+G + ++LG+++ R+   GTI++SQ  YI +VL+R G ++C+    P+D   R   I A DS G N  + +Y  T VGSL+YA+ G+RPDIA+AV + ++ +++P  E  +  KR+FR+L    D GIT+G   +   L  + ++DW ED  DR+ST+GYV    GGA+ W S+KQ
Sbjct:    8 LTSLGTWQLEE---LPQDRSLVDCKWTYRLKRDGDGKITRYKARLVAKGFSQIPGTDFFETYAPVVRLDTFRLLMAIAVQRNLIIHGMDVVGAYLNGKLDESIYMAQPPEYSDGSGKAAHLKLMLYGLKQSGRVWNEKLNATFLGLGYTRLMSDQCVYIRQMDSGPIIVAVHVDDMTLLAPDDETMSNMKEELKKKLNVMDMGEIQYILGMKIDRNWDKGTITLSQKAYILKVLERMGMNDCKPVKMPMDPNVRLEKIPAGDSRGVNTATRQYYHTGVGSLMYAANGSRPDIAHAVTELSKYVQNPAAEHVTALKRVFRYLKGTLDSGITYGRTMDE--LIPYSDSDWGEDRADRRSTSGYVCTYAGGAVTWSSKKQ 379          
BLAST of mRNA_H-paniculata_contig18281.4470.1 vs. uniprot
Match: UPI001C91A683 (hypothetical protein n=1 Tax=Modestobacter lapidis TaxID=1608613 RepID=UPI001C91A683)

HSP 1 Score: 209 bits (533), Expect = 3.430e-61
Identity = 124/354 (35.03%), Postives = 193/354 (54.52%), Query Frame = 1
Query:   61 RKAIRTKWIFKWKLKKDGSVARYKARLVAQGFS*VESEDFFESNAPVARVSTLRTVFSLNAEHDFELEGMDVDAACLSVPVEEELFVKLPRDIFLSPETYYLCPACVKACMASSRPA----ETGITILTIFFVPLPTHACTSLATKGERDIFVVAYVDDLVIAGRREK-VDEFKHNISRRFRMKDLGSLSHLLGIEVRRDRRNGTISISQGGYIREVLKRCGFDECRGSPTPVDRKLNILARDSGRNGNSSE------YRGTVGSLIYASTGTRPDIAYAVHQAARRMEDPCREDFSTCKRIFRHLSSVPDLGITFGGKSNGHGLE--GFVNADWVEDVEDRKSTTGYVFKLKG 1083
            RKAI  KW+FK K   +G + +YKARLVA+G++ +E  D+ E  +PVA+++++RTV S  A +D E+E MDV  A L   +EEE+++K P       +   +C            P     +       I F       C  +  +GE  + +  YVDD+++ G   K +   K  ++++F MKDLG+ + +LG+ +RRDR    + + Q  YI  +LK+    +C+   TP+   + + A  S +N    E      Y   VGSL+YA   TRPDIA AV   +R M +P +E +   KR+FR+L    +  + F GK +G+ LE  G V+A+W  D+++R+ST+GYVF L G
Sbjct:    2 RKAIGCKWVFKKKQDAEGKIGKYKARLVAKGYAQIEGVDYAEIFSPVAKLTSIRTVLSAAAAYDLEIEQMDVKTAFLHGDLEEEIYMKQPEGFVARGKENLVCKLEKSLYGLKQSPRMWYQKFDSYAQQIGFTRSHADHCVYVKREGEMFVILTLYVDDMLLIGNSTKMIRTVKDLLAKQFEMKDLGAANFILGMHIRRDRARRRLWLGQERYIEGILKKFNMTDCKPVGTPMSVGVKLSAEQSPQNEEEKEQMASIPYASAVGSLMYAMVCTRPDIAQAVGVLSRYMSNPGKEHWIAVKRVFRYLRGTSNYALCFEGKGDGNTLEFMGSVDANWEGDLDNRRSTSGYVFNLLG 355          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18281.4470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6YB57_9STRA7.860e-6836.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7JEY7_PARCT2.940e-6736.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9KES8_PARCT7.970e-6635.84Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9HZ03_PARCT3.030e-6535.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT4.270e-6435.98Retrovirus-related Pol poly from transposon TNT 1-... [more]
Q9M5J7_PICGL1.260e-6335.22Reverse transcriptase n=1 Tax=Picea glauca TaxID=3... [more]
A0A445HPU2_GLYSO3.060e-6236.34Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0HFF8_LARCR2.690e-6135.54Copia protein Gag-int-pol protein Copia VLP protei... [more]
A0A284QR55_ARMOS2.820e-6134.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001C91A6833.430e-6135.03hypothetical protein n=1 Tax=Modestobacter lapidis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18281contigH-paniculata_contig18281:21..1226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue9.7e-38
Seed eggNOG ortholog164328.Phyra85518
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size1119
Cds size852
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18281.4470.1prot_H-paniculata_contig18281.4470.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18281 21..959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.2104166-CDS-H-paniculata_contig18281:20..3661622929420.2104166-CDS-H-paniculata_contig18281:20..366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18281 21..366 -
1691480853.735809-CDS-H-paniculata_contig18281:20..3661691480853.735809-CDS-H-paniculata_contig18281:20..366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18281 21..366 -
1622929420.2253487-CDS-H-paniculata_contig18281:435..7651622929420.2253487-CDS-H-paniculata_contig18281:435..765Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18281 436..765 -
1691480853.74861-CDS-H-paniculata_contig18281:435..7651691480853.74861-CDS-H-paniculata_contig18281:435..765Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18281 436..765 -
1622929420.2409716-CDS-H-paniculata_contig18281:783..9591622929420.2409716-CDS-H-paniculata_contig18281:783..959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18281 784..959 -
1691480853.7571964-CDS-H-paniculata_contig18281:783..9591691480853.7571964-CDS-H-paniculata_contig18281:783..959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18281 784..959 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.2561822-UTR-H-paniculata_contig18281:959..12261622929420.2561822-UTR-H-paniculata_contig18281:959..1226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18281 960..1226 -
1691480853.77517-UTR-H-paniculata_contig18281:959..12261691480853.77517-UTR-H-paniculata_contig18281:959..1226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18281 960..1226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18281.4470.1

>prot_H-paniculata_contig18281.4470.1 ID=prot_H-paniculata_contig18281.4470.1|Name=mRNA_H-paniculata_contig18281.4470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=284bp
MDVDAACLSVPVEEELFVKLPRDIFLSPETYYLCPACVKACMASSRPAET
GITILTIFFVPLPTHACTSLATKGERDIFVVAYVDDLVIAGRREKVDEFK
HNISRRFRMKDLGSLSHLLGIEVRRDRRNGTISISQGGYIREVLKRCGFD
ECRGSPTPVDRKLNILARDSGRNGNSSEYRGTVGSLIYASTGTRPDIAYA
VHQAARRMEDPCREDFSTCKRIFRHLSSVPDLGITFGGKSNGHGLEGFVN
ADWVEDVEDRKSTTGYVFKLKGGAIRWCSRKQQL
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mRNA from alignment at H-paniculata_contig18281:21..1226-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18281.4470.1 ID=mRNA_H-paniculata_contig18281.4470.1|Name=mRNA_H-paniculata_contig18281.4470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1206bp|location=Sequence derived from alignment at H-paniculata_contig18281:21..1226- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCGTTGGTGAAAAATGGGACATGGGAAAGCGAAGAACCGGGGAGGTT ACCGGTACGACGGAAGGCGATTCGTACGAAATGGATTTTCAAGTGGAAAC TGAAGAAGGACGGCAGCGTGGCACGCTACAAAGCGCGACTGGTGGCTCAA GGCTTTTCATAGGTGGAGAGTGAAGATTTCTTTGAAAGCAATGCCCCCGT AGCTCGCGTGTCGACATTACGTACTGTTTTTAGCCTGAACGCCGAACATG ATTTCGAATTAGAAGGCATGGACGTAGATGCGGCGTGTTTGAGCGTCCCC GTGGAAGAAGAGCTGTTCGTTAAGCTACCCCGCGATATTTTCCTTTCTCC CGAGACATACTATTTGTGCCCCGCCTGCGTAAAAGCCTGTATGGCCTCAA GCAGACCGGCCGAAACTGGAATAACAATCTTGACAATTTTCTTGTTGGGA TAGGACTCCAGCGTTCCACTACCGACTCATGCTTGTACTTCTCTCGCGAC GAAGGGGGAGAGAGACATTTTCGTGGTCGCCTATGTTGACGACCTGGTCA TCGCTGGACGTCGTGAGAAAGTAGACGAGTTCAAGCACAACATAAGTCGG CGTTTCAGGATGAAAGACTTGGGCTCCCTCTCGCACCTGTTGGGAATAGA AGTACGACGTGACCGCCGCAATGGTACTATATCAATATCCCAAGGCGGCT ACATCCGTGAGGTACTAAAAAGATGCGGTTTTGACGAGTGTCGAGGCTCA CCCACCCCTGTGGACAGAAAATTGAATATTTTGGCACGCGAGTCGGCCCA CGAGCCAAAATCACGCGGGGCTATACTGTTGGACATAGGCGCAGGAGTAT AAGAAAGCAGCAGTGGGAGAAATGGAAATTCATCTGAATACAGAGGCACA GTAGGATCACTCATATACGCCTCGACAGGAACTAGACCTGATATAGCATA CGCCGTACACCAAGCAGCACGTCGTATGGAGGACCCATGTCGAGAAGACT TCAGTACATGCAAGCGTATTTTTCGTCATCTCAGTAGTGTGCCTGACCTC GGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCGT CAATGCCGATTGGGTGGAAGATGTTGAGGACCGAAAGTCCACAACAGGAT ACGTATTTAAGCTGAAGGGTGGTGCGATACGTTGGTGCTCTAGGAAGCAA CAGTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig18281:21..1226-

>mRNA_H-paniculata_contig18281.4470.1 ID=mRNA_H-paniculata_contig18281.4470.1|Name=mRNA_H-paniculata_contig18281.4470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1704bp|location=Sequence derived from alignment at H-paniculata_contig18281:21..1226- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGTAGATGCGGCGTGTTTGAGCGTCCCCGTGGAAGAAGAGCTGTT
CGTTAAGCTACCCCGCGATATTTTCCTTTCTCCCGAGACATACTATTTGT
GCCCCGCCTGCGTAAAAGCCTGTATGGCCTCAAGCAGACCGGCCGAAACT
GGAATAACAATCTTGACAATTTTCTTATGGACGTAGATGCGGCGTGTTTG
AGCGTCCCCGTGGAAGAAGAGCTGTTCGTTAAGCTACCCCGCGATATTTT
CCTTTCTCCCGAGACATACTATTTGTGCCCCGCCTGCGTAAAAGCCTGTA
TGGCCTCAAGCAGACCGGCCGAAACTGGAATAACAATCTTGACAATTTTC
TTCGTTCCACTACCGACTCATGCTTGTACTTCTCTCGCGACGAAGGGGGA
GAGAGACATTTTCGTGGTCGCCTATGTTGACGACCTGGTCATCGCTGGAC
GTCGTGAGAAAGTAGACGAGTTCAAGCACAACATAAGTCGGCGTTTCAGG
ATGAAAGACTTGGGCTCCCTCTCGCACCTGTTGGGAATAGAAGTACGACG
TGACCGCCGCAATGGTACTATATCAATATCCCAAGGCGGCTACATCCGTG
AGGTACTAAAAAGATGCGGTTTTGACGAGTGTCGAGGCTCACCCACCCCT
GTGGACAGAAAATTGAATATTTTGGCACGCGACGTTCCACTACCGACTCA
TGCTTGTACTTCTCTCGCGACGAAGGGGGAGAGAGACATTTTCGTGGTCG
CCTATGTTGACGACCTGGTCATCGCTGGACGTCGTGAGAAAGTAGACGAG
TTCAAGCACAACATAAGTCGGCGTTTCAGGATGAAAGACTTGGGCTCCCT
CTCGCACCTGTTGGGAATAGAAGTACGACGTGACCGCCGCAATGGTACTA
TATCAATATCCCAAGGCGGCTACATCCGTGAGGTACTAAAAAGATGCGGT
TTTGACGAGTGTCGAGGCTCACCCACCCCTGTGGACAGAAAATTGAATAT
TTTGGCACGCGACAGTGGGAGAAATGGAAATTCATCTGAATACAGAGGCA
CAGTAGGATCACTCATATACGCCTCGACAGGAACTAGACCTGATATAGCA
TACGCCGTACACCAAGCAGCACGTCGTATGGAGGACCCATGTCGAGAAGA
CTTCAGTACATGCAAGCGTATTTTTCGTCATCTCAGTAGTGTGCCTGACC
TCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTC
GTCAATGCCGATTGGGTGGAAGATGTTGAGGACCGAAAGTCCACAACAGG
ATACGTATTTAAGCTGAAGGGTGGTGCGATACGTTGGTGCTCTAGGAAGC
AACAGTTACAGTGGGAGAAATGGAAATTCATCTGAATACAGAGGCACAGT
AGGATCACTCATATACGCCTCGACAGGAACTAGACCTGATATAGCATACG
CCGTACACCAAGCAGCACGTCGTATGGAGGACCCATGTCGAGAAGACTTC
AGTACATGCAAGCGTATTTTTCGTCATCTCAGTAGTGTGCCTGACCTCGG
CATTACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCGTCA
ATGCCGATTGGGTGGAAGATGTTGAGGACCGAAAGTCCACAACAGGATAC
GTATTTAAGCTGAAGGGTGGTGCGATACGTTGGTGCTCTAGGAAGCAACA
GTTA
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