mRNA_H-paniculata_contig18277.4466.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 184 bits (466), Expect = 9.820e-50 Identity = 92/211 (43.60%), Postives = 127/211 (60.19%), Query Frame = 1
Query: 34 AELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEALGGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSALN 666
A+LWHR +GH+ + L+ R +G+ G C C L KS QQ HPK A+Y V+ P +L+ D + P TP ALGGF Y +K T K V L K K+ +++ + + +IPR AR+ LRADKG E+T +R YC + G++L+ A+ N P QIG +ER R + ++ CMLADS LPSLLWGE+ T YL NR P +AL+
Sbjct: 573 ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQD-CSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALH 782
BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 184 bits (466), Expect = 1.040e-49 Identity = 92/211 (43.60%), Postives = 127/211 (60.19%), Query Frame = 1
Query: 34 AELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEALGGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSALN 666
A+LWHR +GH+ + L+ R +G+ G C C L KS QQ HPK A+Y V+ P +L+ D + P TP ALGGF Y +K T K V L K K+ +++ + + +IPR AR+ LRADKG E+T +R YC + G++L+ A+ N P QIG +ER R + ++ CMLADS LPSLLWGE+ T YL NR P +AL+
Sbjct: 695 ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQD-CSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALH 904
BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 184 bits (466), Expect = 1.050e-49 Identity = 92/211 (43.60%), Postives = 127/211 (60.19%), Query Frame = 1
Query: 34 AELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEALGGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSALN 666
A+LWHR +GH+ + L+ R +G+ G C C L KS QQ HPK A+Y V+ P +L+ D + P TP ALGGF Y +K T K V L K K+ +++ + + +IPR AR+ LRADKG E+T +R YC + G++L+ A+ N P QIG +ER R + ++ CMLADS LPSLLWGE+ T YL NR P +AL+
Sbjct: 573 ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQD-CSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALH 782
BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE) HSP 1 Score: 181 bits (459), Expect = 3.280e-49 Identity = 95/217 (43.78%), Postives = 123/217 (56.68%), Query Frame = 1
Query: 22 TTADAELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEAL---GGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSAL 663
T A+ WHR LGH+ + L+ R G GV S C C ++K KQ HPK + +++RP +L++ D M P+ P A G F Y K+T T K VYL + KSD HTY G R+ +R DKGGE TG +FR YC NS ++LE AATN P+QIG+SERD + LA + C+L D P +WGE+ T AYL NR P SAL
Sbjct: 38 TLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSP-CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 253
BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE) HSP 1 Score: 178 bits (452), Expect = 7.780e-49 Identity = 95/217 (43.78%), Postives = 122/217 (56.22%), Query Frame = 1
Query: 22 TTADAELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEAL---GGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSAL 663
T A+ WHR LGH+ + L+ R G V S C C ++K KQ HPK + +++RP +L++ D M P+ P A G F Y KVT T K VYL + KSD HTY G R+ +R DKGGE TG +FR YC NS ++LE AATN P+QIG+SERD + LA + C+L D P +WGE+ T AYL NR P SAL
Sbjct: 362 TLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSP-CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 577
BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE) HSP 1 Score: 181 bits (459), Expect = 8.320e-49 Identity = 95/217 (43.78%), Postives = 123/217 (56.68%), Query Frame = 1
Query: 22 TTADAELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEAL---GGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSAL 663
T A+ WHR LGH+ + L+ R G GV S C C ++K KQ HPK + +++RP +L++ D M P+ P A G F Y K+T T K VYL + KSD HTY G R+ +R DKGGE TG +FR YC NS ++LE AATN P+QIG+SERD + LA + C+L D P +WGE+ T AYL NR P SAL
Sbjct: 38 TLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSP-CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 253
BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE) HSP 1 Score: 181 bits (459), Expect = 8.570e-49 Identity = 95/217 (43.78%), Postives = 123/217 (56.68%), Query Frame = 1
Query: 22 TTADAELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEAL---GGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSAL 663
T A+ WHR LGH+ + L+ R G GV S C C ++K KQ HPK + +++RP +L++ D M P+ P A G F Y K+T T K VYL + KSD HTY G R+ +R DKGGE TG +FR YC NS ++LE AATN P+QIG+SERD + LA + C+L D P +WGE+ T AYL NR P SAL
Sbjct: 38 TLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSP-CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 253
BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE) HSP 1 Score: 177 bits (448), Expect = 9.670e-49 Identity = 93/217 (42.86%), Postives = 122/217 (56.22%), Query Frame = 1
Query: 22 TTADAELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEAL---GGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSAL 663
T A+ WHR LGH+ + L+ R G GV S C C ++K KQ HPK + +++RP +L++ D M P+ P A G F Y K+T T K VYL + KSD HTY G R+ +R DKGGE TG +FR C NS ++LE AATN P+Q+G+SERD + LA + C+L D P +WGE+ T AYL NR P SAL
Sbjct: 38 TLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSP-CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 253
BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE) HSP 1 Score: 180 bits (457), Expect = 1.530e-48 Identity = 94/214 (43.93%), Postives = 128/214 (59.81%), Query Frame = 1
Query: 25 TADAELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTA-MYKVTRPHELMIGDMMRPITPEALGGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSAL 663
TA A WH+ LGH +L IDG+GV FS+ C TC ++KS QQ HPK A M +T +L+ D++ PI+P A+GG+NY++K T + T K VY K DAL++ YVQ IP G RV L +D GGEY DFR YC +G+ ++ + P+Q GISERD R + M C++ ++ LP LWGE+A T +L NR+P AL
Sbjct: 234 TASANTWHQRLGHPNVQVLEQLARIDGSGVHLRDSFSA-CGTCKINKSSQQNHPKIANMDGITERLQLVSTDLLGPISPSAIGGYNYMAKFTDHATRLKAVYFIAKKGDALSSLVNYVQDVAIPLGLRVQYLHSDNGGEYVNSDFRDYCRTTGIIQRFSSPHTPQQNGISERDGRTIMNMARCIINETNLPKHLWGEIAATSVFLINRLPHKAL 446
BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5JFQ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ6_9PHAE) HSP 1 Score: 179 bits (454), Expect = 2.900e-48 Identity = 94/216 (43.52%), Postives = 125/216 (57.87%), Query Frame = 1
Query: 22 TTADAELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEAL---GGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSA 660
T A+ WHR LGH+ + L+ R G GV S C C ++K KQ +HPK + ++++RP +L++ D M P+ P A G F Y K+T T K VYL + KSD+ HTY RG R +R DK GE TG +FR YC NS ++LE AATN P+QIG+SERD + LA + C+L D P +WGE+ T AYL NR P+SA
Sbjct: 38 TLVTADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSP-CGVCQIAKHKQSSHPKQSTHELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDHTKMKEVYLLRKKSDSTEAVHTYNMCVAAARGYRTETIRCDKEGENTGSEFRDYCKNSALKLEYAATNTPQQIGVSERDGQTLAGVTRCLLEDGDFPPSMWGELMLTAAYLLNRSPQSA 252 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18277.4466.1 >prot_H-paniculata_contig18277.4466.1 ID=prot_H-paniculata_contig18277.4466.1|Name=mRNA_H-paniculata_contig18277.4466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=221bp MSTTADAELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKback to top mRNA from alignment at H-paniculata_contig18277:459..1136- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18277.4466.1 ID=mRNA_H-paniculata_contig18277.4466.1|Name=mRNA_H-paniculata_contig18277.4466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=678bp|location=Sequence derived from alignment at H-paniculata_contig18277:459..1136- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18277:459..1136- >mRNA_H-paniculata_contig18277.4466.1 ID=mRNA_H-paniculata_contig18277.4466.1|Name=mRNA_H-paniculata_contig18277.4466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at H-paniculata_contig18277:459..1136- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |