prot_H-paniculata_contig18277.4466.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig18277.4466.1
Unique Name	prot_H-paniculata_contig18277.4466.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	221

Homology

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BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 8.230e-50
Identity = 92/211 (43.60%), Postives = 127/211 (60.19%), Query Frame = 0

Query:    7 AELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEALGGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSALN 217
            A+LWHR +GH+ +  L+  R    +G+   G     C  C L KS QQ HPK A+Y V+ P +L+  D + P TP ALGGF Y +K     T  K V L K K+ +++    + +  +IPR AR+  LRADKG E+T   +R YC + G++L+ A+ N P QIG +ER  R +  ++ CMLADS LPSLLWGE+  T  YL NR P +AL+
Sbjct:  573 ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQD-CSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALH 782

[Close]

BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 8.700e-50
Identity = 92/211 (43.60%), Postives = 127/211 (60.19%), Query Frame = 0

Query:    7 AELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEALGGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSALN 217
            A+LWHR +GH+ +  L+  R    +G+   G     C  C L KS QQ HPK A+Y V+ P +L+  D + P TP ALGGF Y +K     T  K V L K K+ +++    + +  +IPR AR+  LRADKG E+T   +R YC + G++L+ A+ N P QIG +ER  R +  ++ CMLADS LPSLLWGE+  T  YL NR P +AL+
Sbjct:  695 ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQD-CSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALH 904

[Close]

BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 8.750e-50
Identity = 92/211 (43.60%), Postives = 127/211 (60.19%), Query Frame = 0

Query:    7 AELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEALGGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSALN 217
            A+LWHR +GH+ +  L+  R    +G+   G     C  C L KS QQ HPK A+Y V+ P +L+  D + P TP ALGGF Y +K     T  K V L K K+ +++    + +  +IPR AR+  LRADKG E+T   +R YC + G++L+ A+ N P QIG +ER  R +  ++ CMLADS LPSLLWGE+  T  YL NR P +AL+
Sbjct:  573 ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQD-CSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALH 782

[Close]

BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 1.450e-49
Identity = 95/217 (43.78%), Postives = 123/217 (56.68%), Query Frame = 0

Query:    3 TTADAELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEAL---GGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSAL 216
            T   A+ WHR LGH+ +  L+  R   G GV      S  C  C ++K KQ  HPK +  +++RP +L++ D M P+ P A    G F Y  K+T   T  K VYL + KSD     HTY        G R+  +R DKGGE TG +FR YC NS ++LE AATN P+QIG+SERD + LA +  C+L D   P  +WGE+  T AYL NR P SAL
Sbjct:   38 TLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSP-CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 253

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BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 3.380e-49
Identity = 95/217 (43.78%), Postives = 122/217 (56.22%), Query Frame = 0

Query:    3 TTADAELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEAL---GGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSAL 216
            T   A+ WHR LGH+ +  L+  R   G  V      S  C  C ++K KQ  HPK +  +++RP +L++ D M P+ P A    G F Y  KVT   T  K VYL + KSD     HTY        G R+  +R DKGGE TG +FR YC NS ++LE AATN P+QIG+SERD + LA +  C+L D   P  +WGE+  T AYL NR P SAL
Sbjct:  362 TLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSP-CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 577

[Close]

BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 3.750e-49
Identity = 95/217 (43.78%), Postives = 123/217 (56.68%), Query Frame = 0

Query:    3 TTADAELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEAL---GGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSAL 216
            T   A+ WHR LGH+ +  L+  R   G GV      S  C  C ++K KQ  HPK +  +++RP +L++ D M P+ P A    G F Y  K+T   T  K VYL + KSD     HTY        G R+  +R DKGGE TG +FR YC NS ++LE AATN P+QIG+SERD + LA +  C+L D   P  +WGE+  T AYL NR P SAL
Sbjct:   38 TLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSP-CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 253

[Close]

BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 3.870e-49
Identity = 95/217 (43.78%), Postives = 123/217 (56.68%), Query Frame = 0

Query:    3 TTADAELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEAL---GGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSAL 216
            T   A+ WHR LGH+ +  L+  R   G GV      S  C  C ++K KQ  HPK +  +++RP +L++ D M P+ P A    G F Y  K+T   T  K VYL + KSD     HTY        G R+  +R DKGGE TG +FR YC NS ++LE AATN P+QIG+SERD + LA +  C+L D   P  +WGE+  T AYL NR P SAL
Sbjct:   38 TLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSP-CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 253

[Close]

BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 4.170e-49
Identity = 93/217 (42.86%), Postives = 122/217 (56.22%), Query Frame = 0

Query:    3 TTADAELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEAL---GGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSAL 216
            T   A+ WHR LGH+ +  L+  R   G GV      S  C  C ++K KQ  HPK +  +++RP +L++ D M P+ P A    G F Y  K+T   T  K VYL + KSD     HTY        G R+  +R DKGGE TG +FR  C NS ++LE AATN P+Q+G+SERD + LA +  C+L D   P  +WGE+  T AYL NR P SAL
Sbjct:   38 TLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSP-CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSAL 253

[Close]

BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 9.440e-49
Identity = 94/214 (43.93%), Postives = 128/214 (59.81%), Query Frame = 0

Query:    4 TADAELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTA-MYKVTRPHELMIGDMMRPITPEALGGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSAL 216
            TA A  WH+ LGH    +L     IDG+GV     FS+ C TC ++KS QQ HPK A M  +T   +L+  D++ PI+P A+GG+NY++K T + T  K VY    K DAL++   YVQ   IP G RV  L +D GGEY   DFR YC  +G+    ++ + P+Q GISERD R +  M  C++ ++ LP  LWGE+A T  +L NR+P  AL
Sbjct:  234 TASANTWHQRLGHPNVQVLEQLARIDGSGVHLRDSFSA-CGTCKINKSSQQNHPKIANMDGITERLQLVSTDLLGPISPSAIGGYNYMAKFTDHATRLKAVYFIAKKGDALSSLVNYVQDVAIPLGLRVQYLHSDNGGEYVNSDFRDYCRTTGIIQRFSSPHTPQQNGISERDGRTIMNMARCIINETNLPKHLWGEIAATSVFLINRLPHKAL 446

[Close]

BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Match: A0A6H5JFQ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFQ6_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 1.300e-48
Identity = 94/216 (43.52%), Postives = 125/216 (57.87%), Query Frame = 0

Query:    3 TTADAELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSKSKQQAHPKTAMYKVTRPHELMIGDMMRPITPEAL---GGFNYISKVTGYLTTSKYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTYCWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEVAYTVAYLENRVPRSA 215
            T   A+ WHR LGH+ +  L+  R   G GV      S  C  C ++K KQ +HPK + ++++RP +L++ D M P+ P A    G F Y  K+T   T  K VYL + KSD+    HTY       RG R   +R DK GE TG +FR YC NS ++LE AATN P+QIG+SERD + LA +  C+L D   P  +WGE+  T AYL NR P+SA
Sbjct:   38 TLVTADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSP-CGVCQIAKHKQSSHPKQSTHELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDHTKMKEVYLLRKKSDSTEAVHTYNMCVAAARGYRTETIRCDKEGENTGSEFRDYCKNSALKLEYAATNTPQQIGVSERDGQTLAGVTRCLLEDGDFPPSMWGELMLTAAYLLNRSPQSA 252

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig18277.4466.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KJN3_9PHAE	8.230e-50	43.60	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KJH6_9PHAE	8.700e-50	43.60	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J842_9PHAE	8.750e-50	43.60	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5K500_9PHAE	1.450e-49	43.78	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KVF6_9PHAE	3.380e-49	43.78	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JJR8_9PHAE	3.750e-49	43.78	Integrase catalytic domain-containing protein n=11...	[more]
A0A6H5KCT3_9PHAE	3.870e-49	43.78	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KCM0_9PHAE	4.170e-49	42.86	Integrase catalytic domain-containing protein n=5 ...	[more]
A0A6H5KAG6_9PHAE	9.440e-49	43.93	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JFQ6_9PHAE	1.300e-48	43.52	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 57..220 e-value: 8.0E-15 score: 56.5
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 65..180 e-value: 8.2E-9 score: 35.7
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 63..221 score: 13.222
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 6..210
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 6..210
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 62..218

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig18277	contig	H-paniculata_contig18277:459..1121 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig18277.4466.1	mRNA_H-paniculata_contig18277.4466.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig18277 459..1136 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig18277.4466.1 ID=prot_H-paniculata_contig18277.4466.1|Name=mRNA_H-paniculata_contig18277.4466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=221bp
MSTTADAELWHRPLGHVCSNMLNTFRVIDGNGVSCTGQFSSSCDTCALSK
SKQQAHPKTAMYKVTRPHELMIGDMMRPITPEALGGFNYISKVTGYLTTS
KYVYLTKSKSDALNTCHTYVQSEMIPRGARVLRLRADKGGEYTGKDFRTY
CWNSGVRLELAATNAPEQIGISERDRRALAAMITCMLADSGLPSLLWGEV
AYTVAYLENRVPRSALNMELL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf