mRNA_H-paniculata_contig1826.4454.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1826.4454.1 vs. uniprot
Match: D8LC96_ECTSI (Peroxisomal membrane protein PEX16 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC96_ECTSI) HSP 1 Score: 432 bits (1111), Expect = 1.030e-143 Identity = 256/515 (49.71%), Postives = 316/515 (61.36%), Query Frame = 3
Query: 168 PGVSKRAWSYTDFVRANPAGARTVESLLQYTGFFAPARLADRDVAIESGYALASLAAMAHDRILL---------GNSDDPPPLDVCLNTDDYDDISSNLNDIAGGDTAESSARLDANQKRRYSQMTVFADRMRVALSVLAHVQIVTEKIAGQYGGERRRRQTITYVETLKAISRLILLACTKEMVIGGGKYVRGGGRKKSPQCRRDATSTRNSFAWDSRSGNSASDAE------------APEIYTGKRSGVRLVVPPRGRVLWAGSGGLSTVGGSEFVDGACYYRRRGGSNACECESDVIDQSSKSSFNGDTVCGSCGVGVARPQHLWQNPAGSRTEDDVRDGDGGEEETGVSHAWLMAGEVVNILRPLVYSHGCAASGVHSWRPWLVSLGMDALAYTCTTRAGG--GSVALLLPLGRDGNRDRVGVLGNGVASIETVPVLPYLNDTQTTELRRRKLLWLLYLMRSPAFEILTEPVGRSAAGLFDGVPLFGGLASYALNMLLYVQRHHFYTSAS 1643
P S+ W Y +FVR NP ARTVE+LL+Y+GFFAPAR ADRD++IESGYAL+SLAA+AHD+IL+ G D N D D + IA G SS RLD + R S TV A RMRVAL+++A+VQIV EK+A Q+GG RRR+Q I Y+ETLKA++RL+LLACT+EMV+GGG YV GG R+ P R+ + N A +E PE+YTGKRSGV+L+VPPR V+W+G G + GG + G S D SS SSF G C + G G+ + S R+ GG+ AWLMAGEV++ILRPL YS+GCAA+G SWRPWL+SLGMDA A+ CT RAGG G++ALL P+G G+ VPVLPYL++ Q ELRRRK+LW LYLMRSPAFE+L EPV R AAG+F+GVP+ GG+A YALNMLLYVQRHHFYTSAS
Sbjct: 8 PRASEEGWCYANFVRHNPTAARTVETLLRYSGFFAPARFADRDLSIESGYALSSLAALAHDQILIHGQGGGLGRGGQDGG-----AANDDGLDGGQVHALGIAPG----SSIRLDPKNRERPSSTTVVAQRMRVALAMIANVQIVVEKLAAQHGGPRRRQQAIVYLETLKALARLLLLACTREMVVGGGSYVSGGNRRTPPLGNRNKAGAWREVDLNGARLNQAQSSEFAVDRPPSPPCPPPEVYTGKRSGVKLIVPPRASVVWSGRGRSNRSGGVSRLAATASSPSCGSSRRSADGVFQNDSSSSSSFRG---CANGGQGIGTGGSMEAASDESCVWRQRREAQGGQ-------AWLMAGEVIHILRPLAYSYGCAATGERSWRPWLISLGMDAAAFACTARAGGSSGAMALLTPIGEAGSSG--------------VPVLPYLDEEQAAELRRRKMLWFLYLMRSPAFELLAEPVSRGAAGVFEGVPILGGMAGYALNMLLYVQRHHFYTSAS 489
BLAST of mRNA_H-paniculata_contig1826.4454.1 vs. uniprot
Match: A0A835Z8Q5_9STRA (Peroxisomal membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q5_9STRA) HSP 1 Score: 197 bits (502), Expect = 4.670e-52 Identity = 156/487 (32.03%), Postives = 218/487 (44.76%), Query Frame = 3
Query: 195 YTDFVRANPAGARTVESLLQYTGFFAPARLADRDVAIESGYALASLAAMAHDRILLGNSDDPPPLDVCLNTDDYDDISSNLNDIAGGDTAESSARLDANQKRRYSQMTVFADRMRVALSVLAHVQIVTEKIAGQYGGERRRRQTITYVETLKAISRLILLACTKEMVIGGGKYVRGG----GRKKSPQCRRDATSTRNSFAWD-SRSGNSASDAEAPEIYTGKRSGVRLVVPPRGRVLWAGSGGLST-VGGSEFVDGACYYRRRGGSNACECESDVIDQSSKSSFNGDTVCGSCGVGVARPQHLWQNPAGSRTEDDVRDGD----------GGEEETGVSHAWLMAGEVVNILRPLVYSHGCAASGVHSWRPWLVSLGMDALAYTCTTRAGGGSVALLLPLGRDGNRDRVGVLGNGVASIETVPVLPYLNDTQTTELRRRKLLWLLYLMRSPAFEILTEPVGRSAAGLFDGVPLFGGLASYALNMLL 1607
Y+ FV+ANP A +ES+L+Y+GF APA+ +R++ +E+GYA +SLA + HD I ++ + Q+ +R AL VLAH+++V EK+A GG RRRQ IT +E KA+ RL +LA T+EM++ GG + G G+ + + ST D + +G AP +Y GKR G + +P R + + GL GS C + G S + G C CG+ A + AG E+D DG+ G AWL+ GE ++ +RP YS C G +W PWL+S+ +D + CT RA + G GNG A L Q ELRRRK+ W+LYL+R+PAFE+L P AAG F GVP+ GGLASYAL MLL
Sbjct: 10 YSAFVKANPGTANLLESVLRYSGFLAPAQFGERELLVEAGYAASSLAGLLHDGI-------------------------------------NAPQQQHQQRSTGGHEEGVVATLRTALVVLAHIEVVAEKVAAASGGAVRRRQLITAIEVAKAVMRLTILALTREMLLAGGHHAPGAPPLRGQTIAGRVGSRVLSTVGLGLEDRAENGTGHGPPPAPVMYQGKRCGRKYALPARAQARHGSAPGLRLGANGSAPALNGCSSAQNG---------------SHTDMYGAASC--CGLQHAACGGGHGDGAGWMAEED-EDGELERHRRWLHAGRAPAPPPPKAWLLLGEGLHAIRPAAYSAACGRLGEAAWAPWLLSMSVDVASRACTARA----------------VEVRGGRGNGGA----------LTPEQRAELRRRKVQWVLYLLRTPAFELLLGPAATGAAGAFGGVPVLGGLASYALQMLL 415
BLAST of mRNA_H-paniculata_contig1826.4454.1 vs. uniprot
Match: A0A1Y1I5V1_KLENI (Peroxisomal membrane protein PEX16 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I5V1_KLENI) HSP 1 Score: 89.7 bits (221), Expect = 3.200e-15 Identity = 59/156 (37.82%), Postives = 81/156 (51.92%), Query Frame = 3
Query: 1176 LMAGEVVNILRPLVYSHGCAASGVHSWRPWLVSLGMDALAYTCTTRAGGGSVALLLPLGRDGNRDRVGVLGNGVASIETVPVLPYLNDTQTTELRRRKLLWLLYLMRSPAFEILTEPVGRSAAGLFDGVPLFGGLASYALNMLLYVQRHHFYTSAS 1643
L AGEV+ +RPLVY G W+PWL+SLG+DA S+AL+ RD G G L + + +E+ RR++L LLYLMRSP FE++T+P + + VPL G L S AL + VQ ++FYT+AS
Sbjct: 444 LTAGEVLYAMRPLVYVLAMRKWGARKWKPWLLSLGVDAA-----------SMALIAAGDEVLKRDARGKGKEGEGG---------LTEQERSEMARRRVLLLLYLMRSPVFEMVTKPPAEAVGRVLWPVPLLGALTSKALEIFEGVQGYYFYTAAS 579
BLAST of mRNA_H-paniculata_contig1826.4454.1 vs. uniprot
Match: A0A061RB81_9CHLO (Peroxisomal membrane protein PEX16 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RB81_9CHLO) HSP 1 Score: 84.7 bits (208), Expect = 5.350e-14 Identity = 61/159 (38.36%), Postives = 84/159 (52.83%), Query Frame = 3
Query: 1176 LMAGEVVNILRPLVYSHGCAASGVHSWRPWLVSLGMDALAYTCTTRAGGGSVALLLPLGRDGNRDRVG-VLGNGVASIETVPVLPYLN--DTQTTELRRRKLLWLLYLMRSPAFEILTEPVGRSAAGLFDGVPLFGGLASYALNMLLYVQRHHFYTSAS 1643
L+ GEV+++ RP+VY GV SWRPWL+SL +DA + A LL LG + R V S++ L ++ + E +RRKL +LYL+RSP FE T+PV + G VPL G + AL +L+ VQR+ YTSAS
Sbjct: 242 LVLGEVMHLARPMVYCWLLRRYGVRSWRPWLISLLIDAAS------------ARLLSLGNCLSNPRPSSVYKERFTSLQYSRSLSAISWSSVEVKERQRRKLALILYLIRSPCFESATKPVLYNLNGFAGRVPLIGFVTEKALEILIGVQRYFTYTSAS 388
BLAST of mRNA_H-paniculata_contig1826.4454.1 vs. uniprot
Match: A0A061S6T6_9CHLO (Peroxisomal membrane protein PEX16 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S6T6_9CHLO) HSP 1 Score: 85.1 bits (209), Expect = 5.380e-14 Identity = 61/159 (38.36%), Postives = 84/159 (52.83%), Query Frame = 3
Query: 1176 LMAGEVVNILRPLVYSHGCAASGVHSWRPWLVSLGMDALAYTCTTRAGGGSVALLLPLGRDGNRDRVG-VLGNGVASIETVPVLPYLN--DTQTTELRRRKLLWLLYLMRSPAFEILTEPVGRSAAGLFDGVPLFGGLASYALNMLLYVQRHHFYTSAS 1643
L+ GEV+++ RP+VY GV SWRPWL+SL +DA + A LL LG + R V S++ L ++ + E +RRKL +LYL+RSP FE T+PV + G VPL G + AL +L+ VQR+ YTSAS
Sbjct: 283 LVLGEVMHLARPMVYCWLLRRYGVRSWRPWLISLLIDAAS------------ARLLSLGNCLSNPRXSSVYKERFTSLQYSRSLSAISWSSVEVKERQRRKLALILYLIRSPCFESATKPVLYNLNGFAGRVPLIGFVTEKALEILIGVQRYFTYTSAS 429
BLAST of mRNA_H-paniculata_contig1826.4454.1 vs. uniprot
Match: A0A7R9U860_9STRA (Peroxisomal membrane protein PEX16 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U860_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.190e-13 Identity = 61/181 (33.70%), Postives = 93/181 (51.38%), Query Frame = 3
Query: 1176 LMAGEVVNILRPLVYSH-------------GCAASGVHSWRPWLVSLG---MDALAYTCTTRAGGGSVAL----LLPLG---RDGNRDRVGV-LGNGVASIETVPVLPYLNDT-QTTELRRRKLLWLLYLMRSPAFEILTEPVGRSAAGLFDGVPLFGGLASYALNMLLYVQRHHFYTSAS 1643
L+ GE+++ILRP ++ G +S+ WL+ G MD L+ R+ G ++A LL LG + R G G G+ + E + Q ELRRRK+ WLLYL+RSP F+++ EPV ++ + PL G L++YA+ +L+++Q HHFYTS S
Sbjct: 171 LLLGEILHILRPFLFCVIERLVLRRQLRRLGKGEGPPNSYGSWLLLAGSFWMDFLS----DRSSGAALARREVDLLELGVRSAESLRSTTGPRTGTGILTREASLTRAMMRFAEQKEELRRRKMQWLLYLLRSPLFQLICEPVAKTTDKVLGRAPLIGSLSNYAMQLLMHIQSHHFYTSGS 347
BLAST of mRNA_H-paniculata_contig1826.4454.1 vs. uniprot
Match: A0A1W0AC00_9STRA (Peroxisomal membrane protein PEX16 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AC00_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 4.970e-13 Identity = 54/156 (34.62%), Postives = 76/156 (48.72%), Query Frame = 3
Query: 1179 MAGEVVNILRPLVYSHGCAASGVHSWRPWLVSLGMDALAYTCTTRAGGGSVALLLPLGRDGNRDRVGVLGNGVASIETVPVLPYLNDTQTTELRRRKLLWLLYLMRSPAFEILTEPVGRSAAGLFDGVPLFGGLASYAL-NMLLYVQRHHFYTSAS 1643
+AGEV++ILRP++Y+ C SW P+L S + L C++ G+ + V P + + ELRRRK+ LLYL+R+P F T+P+ + A VPL G L +A+ N L Y QR HFYTSAS
Sbjct: 192 LAGEVLHILRPVIYAILCQRKTEQSWIPFLASFSTEILGIACSSA--------------------------GLEHSNKLSVDPLVAE----ELRRRKMCLLLYLLRNPFFSSATQPLADNVANATKPVPLLGRLLQFAIDNGLHYYQRRHFYTSAS 317
BLAST of mRNA_H-paniculata_contig1826.4454.1 vs. uniprot
Match: A0A067BFH5_SAPPC (Peroxisomal membrane protein PEX16 n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BFH5_SAPPC) HSP 1 Score: 80.9 bits (198), Expect = 5.450e-13 Identity = 52/156 (33.33%), Postives = 72/156 (46.15%), Query Frame = 3
Query: 1179 MAGEVVNILRPLVYSHGCAASGVHSWRPWLVSLGMDALAYTCTTRAGGGSVALLLPLGRDGNRDRVGVLGNGVASIETVPVLPYLNDTQTTELRRRKLLWLLYLMRSPAFEILTEPVGRSAAGLFDGVPLFGGLASYAL-NMLLYVQRHHFYTSAS 1643
+ GE+++ILRP+VY+ C SW P+L S + L C++ A + P + T E RRRK+ LYL+R+P F +T P+ S A VP+ G L +A+ N LLY QR HFYTSAS
Sbjct: 204 LTGEILHILRPVVYAVLCQRKSEQSWVPFLASFSTEVLGLLCSSAE---------------------------APTKATPAV-------TEEFRRRKMCLFLYLLRNPLFSSVTNPLADSVANATQPVPVLGRLIQFAIDNGLLYYQRRHFYTSAS 325
BLAST of mRNA_H-paniculata_contig1826.4454.1 vs. uniprot
Match: A0A1V9ZIW7_9STRA (Peroxisomal membrane protein PEX16 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZIW7_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 6.960e-13 Identity = 51/156 (32.69%), Postives = 70/156 (44.87%), Query Frame = 3
Query: 1179 MAGEVVNILRPLVYSHGCAASGVHSWRPWLVSLGMDALAYTCTTRAGGGSVALLLPLGRDGNRDRVGVLGNGVASIETVPVLPYLNDTQTTELRRRKLLWLLYLMRSPAFEILTEPVGRSAAGLFDGVPLFGGLASYAL-NMLLYVQRHHFYTSAS 1643
+ GE+++ILRP++Y+ C SW P+L S + L C++R P + T E RRRK+ LYL+R+P F +T P+ A VPL G L +A+ N LLY QR HFYTSAS
Sbjct: 226 LTGELLHILRPVIYAVLCQRKTEQSWLPFLASFSTEVLGILCSSRE---------------------------------PSAKKASPAATEEWRRRKMCLFLYLLRNPFFSNVTHPLAEGVANATQPVPLLGRLVQFAIENGLLYYQRRHFYTSAS 348
BLAST of mRNA_H-paniculata_contig1826.4454.1 vs. uniprot
Match: W7TST8_9STRA (Peroxisomal membrane protein PEX16 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TST8_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.110e-12 Identity = 132/546 (24.18%), Postives = 205/546 (37.55%), Query Frame = 3
Query: 192 SYTDFVRANPAGARTVESLLQYTGFFAPARLADR---DVAIESGYALASLAAMAHDRILLGNSDDPPPLDVCLNTDDYDDISSNLNDIAGGDTAESSARLDANQKRRYSQMTVFADRMRVALSVLAHVQIVTEKIAGQYGGERRRRQTITYVETLKAISRLILLACTKEMVIGGGKYVRGGGRKKSPQCRRDATSTRNSFAWDSRSGNSASDAEAPEI---YTGKRSGVRLVVPPRGRVLWAGSGGLSTVGGSEFVDGACYYRRRGGSNACECESDVIDQSSKSSFNGDTVCGSCG--VG-VARPQHLW--QNPAGSRTEDDVRDG---------DGGEEETGVSHAW---------------LMAGEVVNILRPLVYSH------------GCAASG-----------VHSWRPW----LVSLGMDALAYTCTTRAGGGSVALLLPLGRDGNRDRVGVLGNGVASIETVPVLPYLNDTQTTELRRRKLLWLLYLMRSPAFEILTEPVGRSAAGLFDGVPLFGGLASYALNMLLYVQRHHFYTSAS 1643
SY FVR + R +E L++ FF P+R + ++ E A +++ + +D +LLG + P + DR+ + L +++H +++ EKI+ + G + + ++E LK + RL L++ ++ + GGR P R S R S S++ E + +G SGV +L ++ +E +G + R R S+ S+NGD GS +G + R W +P+ S G G E V W L+AGE+++ILRPLV + G A + +HS P L+ MD ++Y CTT G L G +++ + ELRRRK LWLLYL+R+P FE LT PV R+ G +PL GGLASY+ L+Y+QRH TS S
Sbjct: 6 SYISFVRNHALFVRPLEGLIRTVTFFLPSRFYENGNGEIVSEGALAASNVMTLVNDLVLLGPRNTP-------------------------------------------LLPKEEDRLGLTLLLISHTEVLAEKISMRLG-DGTDHLVVLWLEALKVLLRLRLVSLQQQHGGNANVVLLDGGRA-IPTFHRPVESARPS---------SSTPGETSSLGVKNSGATSGVEEDQEDEEVLLRVLPEEVARPKRAECREGQEWKRGRRTGRKFRYFSE--------SYNGDDDYGSNRHLIGDLTRCNARWTLSSPSPSSASSSTESGASTSPSAPTTGDCEGVAVGIEWTREERPEVAQARARLLLAGEILHILRPLVLASLRWALARRRRVKGRAVAAPPMGRSLRRGPLHSAAPESLLVLLPALMDLVSYQCTT----------------------GALNGGDNALK---------QSCEDELRRRKNLWLLYLLRTPVFEGLTHPVTRAVDGSLVRLPLVGGLASYSYQALIYIQRHFTLTSGS 458 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1826.4454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1826.4454.1 >prot_H-paniculata_contig1826.4454.1 ID=prot_H-paniculata_contig1826.4454.1|Name=mRNA_H-paniculata_contig1826.4454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=506bp MMQRQRSQGVRNAPGVSKRAWSYTDFVRANPAGARTVESLLQYTGFFAPAback to top mRNA from alignment at H-paniculata_contig1826:5014..8762- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1826.4454.1 ID=mRNA_H-paniculata_contig1826.4454.1|Name=mRNA_H-paniculata_contig1826.4454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3749bp|location=Sequence derived from alignment at H-paniculata_contig1826:5014..8762- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1826:5014..8762- >mRNA_H-paniculata_contig1826.4454.1 ID=mRNA_H-paniculata_contig1826.4454.1|Name=mRNA_H-paniculata_contig1826.4454.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3036bp|location=Sequence derived from alignment at H-paniculata_contig1826:5014..8762- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |