mRNA_H-paniculata_contig1823.4440.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1823.4440.1
Unique NamemRNA_H-paniculata_contig1823.4440.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: D8LUD2_ECTSI (DRMBL domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUD2_ECTSI)

HSP 1 Score: 379 bits (974), Expect = 1.500e-123
Identity = 194/291 (66.67%), Postives = 214/291 (73.54%), Query Frame = 1
Query:   52 MALQDEKIKWVEGTPFMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGGRVTCHTGDFRADSSVCTNPIIKSLRGRLDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKARIMRLSGAWDDTVYTTHDAGAGGVDSKHACVHAVPLQVLHTPATLLGALAEAQAAGAPFTSVVGVRPTGWTHHNTAK 924
            MA QDEKIKWVEG+PFMVDGFRFTNPRCRHY LTHFHSDHTTGLYKSFSAG IY S GTANL+  L+GVN +RVVALPM+  V+VAGF++TL+DANHCPAAVMF+IRDP PGGR T HTGDFRA  SVC NP++KSL+GRLDSLYLDTTYCGPRH FP+Q EVLAQA  LVRMEL++DPNTLFLVGTYSIGKEKVLEAVAK                       DT                           ++PATL  AL +A+A GAPFTSVVGVRPTGWTH N  K
Sbjct:    1 MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFDLTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVVKSLKGRLDSLYLDTTYCGPRHTFPDQSEVLAQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAK-----------------------DT---------------------------NSPATLREALTKARAGGAPFTSVVGVRPTGWTHTNARK 241          
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: A0A8J9WR85_9CHLO (Probable DNA cross-link repair 1A protein at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WR85_9CHLO)

HSP 1 Score: 232 bits (592), Expect = 2.950e-66
Identity = 132/291 (45.36%), Postives = 174/291 (59.79%), Query Frame = 1
Query:   52 MALQDEKIKWVEGTPFMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGG-----RVTCHTGDFRADSSVCTNPIIKSLRGRLDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKARIMRLSGAWD-DTVYTTHDAGAGGVDSKHACVHAVPLQVLHTPATLLGALAEAQAAGAPFTSVVGVRPTGWT 906
            MA Q E IKWV  TPFMVDGFRF  PRC+HY+L+H+HSDHT GL  SFSAGTIY S+ TANL+   + +NP  +  LP++  ++V G  +TL+DANHCP AV+F+ + P P G     +V  HTGD R    +  +P +   + R+D L+LDTTY  P+H FP Q+  +A    ++R E    P TLF+VG+Y IGKE+     AKA G +  V + K R++RL G  D D    T DA A       A +H   +  L TP     AL E +  G  +T VV  RPTGW+
Sbjct:    1 MAEQVENIKWVPNTPFMVDGFRFQTPRCKHYWLSHYHSDHTIGLSTSFSAGTIYCSKVTANLLVKDMRINPSCIQPLPLDTPLLVDGVHVTLIDANHCPGAVLFLFKTPAPPGSEFPEQVILHTGDMRWHPRMGRHPALA--KQRIDMLFLDTTYASPKHVFPCQENAIADIVKVMRKERDAHPRTLFIVGSYRIGKERAYLGAAKALGWKVYVNADKLRVLRLLGLPDSDMALLTKDAAA-------AQIHVSFMGKLLTP----DALTE-RIRGTKWTHVVAFRPTGWS 277          
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: I0YMI9_COCSC (DRMBL-domain-containing protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YMI9_COCSC)

HSP 1 Score: 217 bits (553), Expect = 3.460e-65
Identity = 123/281 (43.77%), Postives = 170/281 (60.50%), Query Frame = 1
Query:   82 VEGTPFMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGG-----RVTCHTGDFRADSSVCTNPIIKSLRGRLDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKARIMRLSGAWD-DTVYTTHDAGAGGVDSKHACVHAVPLQVLHTPATLLGALAEAQAAGAPFTSVVGVRPTGWT 906
            V  T FMVDGFRF + RC+HY+L+H+HSDHTTGL  SFS+GTIY S  TANL+   + +NP  +  LP+N  ++V G  +TL+DANHCP AV+F+ + P P G     +V  HTGD R    +  +P +K+ R  +D L+LDTTY  P+H FP Q++ +A    +++ E +  P TLF++G+Y IGKE+     AKA G +  V + K R++RL G  + D    T DA A       A +H   +  L TP     AL +   AG P+T VV  RPTGW+
Sbjct:    1 VPNTRFMVDGFRFQSSRCKHYWLSHYHSDHTTGLTTSFSSGTIYCSAVTANLLVKDMHINPSCIQPLPLNIPLLVDGINVTLIDANHCPGAVLFLFKTPPPPGSEFSEQVILHTGDMRWHPRMGRHPALKNQR--IDMLFLDTTYASPKHVFPCQEDAIADIVRVMKQEAKARPGTLFIMGSYRIGKERAYLGAAKALGWKVHVNADKLRVLRLLGLPENDMALLTRDAAA-------ARIHVSFMGKLLTP----DALTDRIRAG-PWTHVVAFRPTGWS 267          
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: A0A1Y1HYN4_KLENI (Putative DNA repair metallo-beta-lactamase family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HYN4_KLENI)

HSP 1 Score: 230 bits (586), Expect = 1.150e-64
Identity = 131/301 (43.52%), Postives = 173/301 (57.48%), Query Frame = 1
Query:   52 MALQDEKIKWVEGTPFMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGGR---VTCHTGDFRADSSVCTNPIIKSLRGRL-DSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKARIMRLSGAWDDTVYTTHDAGAGGVDSKHACVHAVPLQVLHTPATLLGALAEAQAAGAPFTSVVGVRPTGWTHH----NTAKEG 930
            MALQ E IKW+ GT FMVDGF+F N RCR YFLTHFHSDHT GLY+SF++GTI+ S+ TA L+   +G+    +  LPM+K V + G E+T +DANHCP +VM + + P  GGR   V  HTGDFR    +   P   SLR  L D++YLDTTY  PRH FP Q++ +A    L R  L  +   LF+ G Y IGKE+ +   AKA G R  +  RK RI+ L    D  ++T + A A         +H   +  +  PA L       +  G  +  V+G RPTGW+      +T K+G
Sbjct:    1 MALQQEAIKWIAGTDFMVDGFKFQNLRCRRYFLTHFHSDHTIGLYRSFNSGTIFCSRITAALLINCMGLRSDCIQVLPMDKTVTIDGVEVTALDANHCPGSVMLLFKVPGHGGRPAQVILHTGDFRYHERMADYP---SLRNTLIDTIYLDTTYAYPRHTFPSQEDAIATTVRLCRKHLLDEARPLFVFGAYQIGKERAVIGAAKALGLRVHIEPRKRRILSLLDLQDMDLFTPNAADAD--------IHLGFMSEVRPPAMLR----RLKEGGGKWAQVIGFRPTGWSFRKDGVHTTKQG 286          
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: A0A4D9CSH8_9STRA (DRMBL domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSH8_9STRA)

HSP 1 Score: 206 bits (523), Expect = 3.020e-58
Identity = 110/238 (46.22%), Postives = 143/238 (60.08%), Query Frame = 1
Query:   52 MALQDEKIKWVEGTPFMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGGRVTCHTGDFRADSSVCTNPIIKSLRGR---LDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKARIMRLSGAWDDTVYTTHDAGA 756
            MA Q E+IKW+EGT F+VDGF F +P+C  YFLTHFHSDH  GL  SF  GTIY S  T  L+   +GV P+ V  LP+ K   + G E+TL+DANHCP AVM +  +      +  HTGDFRA S   T      LR R   + +LYLDTTYC  ++ FP Q  VLA  + +   E  + P+T+F VGTYSIGKE+ + AVA   G +      K R +RL+  WD+ V+ +   G+
Sbjct:    1 MASQVERIKWIEGTSFLVDGFNFLSPKCSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTNTTIL-HTGDFRA-SEALTERTASWLRDRDLRVRTLYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIG-KVYADKHKERTLRLASEWDEEVFVSEMEGS 235          
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: A0A8J5XFD5_DIALT (SWIM-type domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XFD5_DIALT)

HSP 1 Score: 207 bits (527), Expect = 2.200e-56
Identity = 114/223 (51.12%), Postives = 141/223 (63.23%), Query Frame = 1
Query:   97 FMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGGRVTCHTGDFRADSSVCTNPIIKSL--RGRLDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKARIMRLSGAWDDTVYTTHDAGAG 759
            F+VDGF F  P    YFLTH+H DHT GL  SF AGTIY SQ TANLV A+  V+ KRVVAL +++  +V G E+T  DANHCP AV    R+P  G     HTGDFRA+  VC +P +  L   G +D+L+LDTTYC PR  FP Q  VLA    L R EL ++P TLFL+G+Y IGKE+ + A+A A GS   V+  +AR +RL G W D    T +A  G
Sbjct:   19 FIVDGFSFQRPDLTAYFLTHYHGDHTVGLNASFCAGTIYCSQITANLVIAVGLVDAKRVVALALDETSLVDGVEVTPFDANHCPGAVCLHFRNPRTGA-TALHTGDFRAERCVCESPTLARLLAAGPVDTLFLDTTYCAPRWRFPAQAAVLASLRDLARAELAREPLTLFLIGSYEIGKERAVFALASALGSPVDVSDARARKLRLCGWWRDGWVVTGEAAEG 240          
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: W7THR8_9STRA (Dna cross-link repair 1a protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THR8_9STRA)

HSP 1 Score: 193 bits (491), Expect = 4.460e-55
Identity = 103/217 (47.47%), Postives = 132/217 (60.83%), Query Frame = 1
Query:   52 MALQDEKIKWVEGTPFMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGGRVTCHTGDFRADSSVC--TNPIIKSLRGRLDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKAR 696
            MA Q E+IKW+EGT F+VDGF F +P+C  YFLTHFHSDH  GL  SF  GTIY S  T  L+   +GV P+ V  LP+ K   + G E+TL+DANHCP AVM +  +      +  HTGDFRA  ++   T   I+    R+  LYLDTTYC  ++ FP Q  VLA  + +   E  + P+T+F VGTYSIGKE+ + AVA   G   L   + AR
Sbjct:    1 MASQVERIKWIEGTSFLVDGFNFLSPKCSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTKSTIL-HTGDFRASEALTERTASWIRDRDLRVRILYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIGWSYLRNRKTAR 216          
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: A0A7S2WP51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WP51_9STRA)

HSP 1 Score: 185 bits (470), Expect = 2.410e-54
Identity = 100/196 (51.02%), Postives = 120/196 (61.22%), Query Frame = 1
Query:   52 MALQDEKIKWVEG--TPFMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGGRVTCHTGDFRADSSVCTNPIIKSL--RGRLDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGK 627
            MA Q   IK V G  + F+VDGF F    C+ YFLTH+H DHTTGL+  F  GTIY S+ TA LV   +GV  K V  LP+++   V G  +  VDA HCP AVMF   DP  G RV  H GDFRA+  V  +P + +   RG LD LYLDTTYC P H FP+Q  VL     +VR EL ++  TLF+VGTY IGK
Sbjct:    3 MAAQTSSIKAVRGLSSRFIVDGFNFVEAECKSYFLTHYHGDHTTGLHAGFDLGTIYCSEVTARLVVHDLGVASKLVCVLPLHEWTTVEGVHVMPVDACHCPGAVMFFFDDPTAGRRVL-HCGDFRAEECVVESPHLAAALARGPLDELYLDTTYCRPTHTFPDQPAVLRDVEAIVRHELGQERRTLFVVGTYQIGK 197          
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: A0A2P6TNP6_CHLSO (DNA cross-link repair SNM1 isoform X1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TNP6_CHLSO)

HSP 1 Score: 199 bits (506), Expect = 3.200e-54
Identity = 122/292 (41.78%), Postives = 166/292 (56.85%), Query Frame = 1
Query:   46 ATMALQDEKIKWVEGTPFMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDP--NPGGR--VTCHTGDFRADSSVCTNPIIKSLRGRLDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKARIMRLSGAWDDTVYTTHDAGAGGVDSKHACVHAVPL-QVLHTPATLLGALAEAQAAGAPFTSVVGVRPTGWT 906
            A MA Q E IKWV GT F+VDGFRF +P CR YFLTH HSDHTTGL KSF+AG IY S  TA ++    G+ P  +  L +++   +AG E+T +DANHCP A MF+ + P  +PG +  V  HTGD R    +  +P +K  +  +D L LDTTYC PR + P Q EV+A  A  +      +P TLF+VG+Y IGKE+     A A G R   T  K R++RL G   + +    +        + A +H + + + LH  A     LA+ +  G  +   V ++PTGWT
Sbjct:  425 AAMASQVEAIKWVPGTKFLVDGFRFQHPNCRAYFLTHAHSDHTTGLSKSFNAGPIYCSPVTARVLRHDFGLRPDCLRVLELDETATIAGVEVTPMDANHCPGAAMFLFKVPPSSPGSKAQVILHTGDMRWQPWMAEHPALKGQQ--VDILILDTTYCTPRWSLPPQSEVVAAMAEHMAAAAAAEPATLFVVGSYHIGKERAYLGAAAALGWRVHCTPTKHRLLRLLGLPAEWLALLTE------QPEEAQIHVLSMGEQLHEQA-----LAD-RIEGTAWKRAVALKPTGWT 702          
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: A0A565BS29_9BRAS (DRMBL domain-containing protein n=7 Tax=Brassicaceae TaxID=3700 RepID=A0A565BS29_9BRAS)

HSP 1 Score: 187 bits (476), Expect = 5.620e-52
Identity = 113/289 (39.10%), Postives = 161/289 (55.71%), Query Frame = 1
Query:   76 KWVEGTPFMVDGFRFTNPR-CRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGGRVTCHTGDFRADSSVCTNPIIKSLRGRLDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKARIMRLSGAWDDTVYTTHDAGAGGVDSKHACVHAVPLQVLHTPATLLGALAEAQAAGAPFTSVVGVRPTGWTHHNTAKEGEQV 939
            K + GTPF VD FR+   + C  YFLTHFH+DH  GL K++S G IY S  T+ L+   + +NP  +  L ++ +  V G ++TL++ANHCP A +   R  +  G    HTGDFRA   + T+P++     RL  LYLDTTYC PR+ FP +++VL+    + +  LRK P TL +VG+YSIGKE V  A+AKA G +    + + RI++  G WDD             D K  C+H +P+  L     +       +  GA    V+  RPTGWT+  + K GE +
Sbjct:  147 KKLPGTPFTVDAFRYGCVQGCSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLLRRSLSINPSFIHPLELDVEYTVNGIKVTLIEANHCPGAALIHFRLLD--GTCYLHTGDFRASKQMQTHPLL--FNQRLHVLYLDTTYCNPRYKFPSKEDVLSYVVRIAKEFLRKQPKTLIVVGSYSIGKECVYLAIAKALGVKIFANASRRRILQSFG-WDDISKNLC------TDGKATCLHVLPMSSLRVEKLVEHLKVYREQYGA----VLAFRPTGWTY--SEKIGEHL 418          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUD2_ECTSI1.500e-12366.67DRMBL domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A8J9WR85_9CHLO2.950e-6645.36Probable DNA cross-link repair 1A protein at N-ter... [more]
I0YMI9_COCSC3.460e-6543.77DRMBL-domain-containing protein (Fragment) n=1 Tax... [more]
A0A1Y1HYN4_KLENI1.150e-6443.52Putative DNA repair metallo-beta-lactamase family ... [more]
A0A4D9CSH8_9STRA3.020e-5846.22DRMBL domain-containing protein n=1 Tax=Nannochlor... [more]
A0A8J5XFD5_DIALT2.200e-5651.12SWIM-type domain-containing protein n=1 Tax=Diacro... [more]
W7THR8_9STRA4.460e-5547.47Dna cross-link repair 1a protein n=1 Tax=Nannochlo... [more]
A0A7S2WP51_9STRA2.410e-5451.02Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A2P6TNP6_CHLSO3.200e-5441.78DNA cross-link repair SNM1 isoform X1 n=1 Tax=Chlo... [more]
A0A565BS29_9BRAS5.620e-5239.10DRMBL domain-containing protein n=7 Tax=Brassicace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1823contigH-paniculata_contig1823:17809..20629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score380.2
Seed ortholog evalue1e-102
Seed eggNOG ortholog2880.D8LUD2
KEGG koko:K15340
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protection from non-homologous end joining at telomere
EggNOG OGsCOG1236@1,KOG1361@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Exons5
Model size993
Cds size993
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1823.4440.1prot_H-paniculata_contig1823.4440.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1823 17809..20629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929417.1821587-CDS-H-paniculata_contig1823:17808..179741622929417.1821587-CDS-H-paniculata_contig1823:17808..17974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1823 17809..17974 +
1691480852.4033973-CDS-H-paniculata_contig1823:17808..179741691480852.4033973-CDS-H-paniculata_contig1823:17808..17974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1823 17809..17974 +
1622929417.2027383-CDS-H-paniculata_contig1823:18734..189271622929417.2027383-CDS-H-paniculata_contig1823:18734..18927Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1823 18735..18927 +
1691480852.4182274-CDS-H-paniculata_contig1823:18734..189271691480852.4182274-CDS-H-paniculata_contig1823:18734..18927Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1823 18735..18927 +
1622929417.2226796-CDS-H-paniculata_contig1823:19333..195111622929417.2226796-CDS-H-paniculata_contig1823:19333..19511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1823 19334..19511 +
1691480852.4273994-CDS-H-paniculata_contig1823:19333..195111691480852.4273994-CDS-H-paniculata_contig1823:19333..19511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1823 19334..19511 +
1622929417.2431571-CDS-H-paniculata_contig1823:19888..200191622929417.2431571-CDS-H-paniculata_contig1823:19888..20019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1823 19889..20019 +
1691480852.4360309-CDS-H-paniculata_contig1823:19888..200191691480852.4360309-CDS-H-paniculata_contig1823:19888..20019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1823 19889..20019 +
1622929417.263444-CDS-H-paniculata_contig1823:20304..206291622929417.263444-CDS-H-paniculata_contig1823:20304..20629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1823 20305..20629 +
1691480852.452954-CDS-H-paniculata_contig1823:20304..206291691480852.452954-CDS-H-paniculata_contig1823:20304..20629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1823 20305..20629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1823.4440.1

>prot_H-paniculata_contig1823.4440.1 ID=prot_H-paniculata_contig1823.4440.1|Name=mRNA_H-paniculata_contig1823.4440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=331bp
TLSNSQSTHHYPIPAATMALQDEKIKWVEGTPFMVDGFRFTNPRCRHYFL
THFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQV
MVAGFEITLVDANHCPAAVMFIIRDPNPGGRVTCHTGDFRADSSVCTNPI
IKSLRGRLDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLF
LVGTYSIGKEKVLEAVAKAAGSRCLVTSRKARIMRLSGAWDDTVYTTHDA
GAGGVDSKHACVHAVPLQVLHTPATLLGALAEAQAAGAPFTSVVGVRPTG
WTHHNTAKEGEQVAKEATKRARALEIAEVGV
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mRNA from alignment at H-paniculata_contig1823:17809..20629+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1823.4440.1 ID=mRNA_H-paniculata_contig1823.4440.1|Name=mRNA_H-paniculata_contig1823.4440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2821bp|location=Sequence derived from alignment at H-paniculata_contig1823:17809..20629+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTCTCTCAAATTCCCAGTCAACACACCACTACCCGATACCAGCTGCTAC CATGGCGCTACAAGACGAGAAAATCAAGTGGGTTGAGGGAACACCTTTTA TGGTCGATGGATTCAGGTTCACTAATCCTCGGTGTCGCCATTACTTTCTG ACCCACTTTCATTCAGGTATGTATGGAGACTTGTGAAATGACAATAACCA TGATAGCTATATACAGGTAGGAGGACTACAGACATACCTGGTAGGACTGA GGTTGTGAGGGTCATGTCGAGATATTCAAAGGCTACAGCATACAGGTGGA CCGGAGCAAGGACGGTTAATTGTAGTATACGAAAATTCTCGAGCGCAGCT TAGGCAACTTCAAAGATTACGCTGCGGATACGCTGTTTTTCGGATTCACA CAAGAACAGTCCACACAAGTCACTCGTCAATACCGCCAGTACTGCTTCTG TAGGTAGCAGTAGGAGCGAGCCGTGTAACTGTTTGCATTGGGGGACAAAT CTCCCATTGCACTGCCCAATAAAACTCAACTCCTCCACCCCTAGGCTATT ACGATTGCACCGGAGATACACAGGAAAGCGTATTATGTTGGGAGTCTATA CCGTTGGTCAGTGGTTCGACCAGTGCAAGTGTTGACGAGGCGAAAAAAGC CTCGAGTTCAATATTTTTTTGACTTTCCCCCAGGCCGATTCTAGTCACGC TCGGATGTGAGTTCTCCTTTTGAACCAGCGATTGAAACAACTTCACCGCC TTAATCACACGGGCTGATGAATACCATGAGGTCCCCAATTTTTACCCACG ACACACGATATCCCATACGTTCGAAGCCAAATGCAGTGCAATACAGTGCA GTCGGAGAATCCACAAAGCCCCGATCAGCATCATGCACCCTTTCTCTATC CCTTTGCCTTGTCACATGGATATCAGACCACACGACGGGACTGTACAAGT CGTTCTCGGCGGGAACTATCTACGCTTCTCAGGGCACCGCCAACTTGGTG ACGGCGCTCATTGGAGTCAACCCCAAGCGAGTGGTTGCGTTGCCGATGAA CAAGCAGGTCATGGTTGCTGGGTTCGAGATCACACTCGTTGACGCCAACC ATTGCCCAGCCGCGGTCATGTGAGGCAACACCTTAAGGCGGCAAAGGGAG GGAGAGGGAGAAAGATCCGATCCTTGCAAGCACGCTGAGCGTCTATCGTA CTTCTGCGAGGAAACGTCTAGATCTGCGTTCTTGTATTTTCGTTCTACTC TACGGTATGCTTATATATACATTAGCACCGCGGCGTGCCACTAGCGTAGC TGACAGCGCATTCCGTGCGAGTCATAATATTGGTACAGCAGTGATATTTG CGATACTTTTACACGGCTGGACCCACACAGTCGTGAATAGCGCTTGCCAG GCGGGCCGCATATATATATATATATTTGAACGCACTCTGGAGTCTGGAGG TGTGGCGAAAAGCTGGTGCAGCACAAACTCGCTTCCCTCAAAACGCTGTG CGCCAAAACTGTCGTACGCACTCAGGTTCATCATTCGAGATCCAAACCCC GGAGGTCGCGTCACTTGCCACACTGGTGACTTCCGGGCGGACAGCTCTGT GTGCACAAACCCCATCATAAAGTCCCTCAGAGGGCGTTTAGATTCGCTGT ACCTCGACACAACTTACTGCGGCCCACGCCACGCATTTCCAGAACAACAG GAGGCAAGTGGGTGTAGACCAACGGGTAGGGGGCAGGTGGGAGGCTACTG TCAGGGCCGAAAAATAGCCTGTGGACCAATAGTAGGCAGTGACTCGTTGG CTAAAAGTGGTTAGTTTGTGCACTCTCAAGAAACGCAACACACTAGCCTG GGTATGATTCCATTTCGCCACACTGCTTCAGCGAGATTTGGAGAATCGAT GAAAGAGCTGACCGCCCTCAGCGAGGTATTGGGGAACAGTGCTGATGAAA AGGAGGGAAGCTCTTGGGTTGGAGATGAAATAGGACGGAGAGGAATTGCA CCGTTCTGACTTCATCCACGCTGGGCGAGTTGCCTCCTAATGCCTGACAG GTGCTTCTCGTACTTTTCGTGGCCGTGCAGGTACTGGCGCAAGCTGCAAT TCTGGTGCGAATGGAGCTGCGAAAAGACCCCAACACCCTCTTTCTTGTAG GAACGTACTCCATCGGGAAGGAAAAGGTGCTCGAGGCCGTGGCGAAAGCG GCAGGTAGCCGGTAAGCACAGGTAGCTCATTCTTTGATAGTCAGCTGCAC AATTTTTTGTTTTTCCAGCCAATAGTGTCTTCAATCGTCAAACGACGACT TGGAAGGGCGGAGAGGATACCCACATTTTTTCTATCCAGGGACACAGCGT CTCTCACAACGTTTGAAACATTACACTATTGTGGTGCAATCTTCGATTAT GTCAATCGCGCGCGTGTATTTATGCACGATACGTGACCCGTCAAGCTCGC ATTATATATATATATATCCCCCTCCCCCACTGCCGTTTTTATCTAGGTGC CTCGTCACTAGCCGAAAAGCACGCATTATGCGTCTAAGCGGTGCCTGGGA TGATACCGTATACACTACTCACGATGCTGGTGCGGGCGGCGTAGACAGCA AACACGCGTGCGTCCACGCCGTACCTCTCCAAGTGCTACACACCCCAGCT ACCCTCCTCGGTGCCCTGGCCGAAGCTCAAGCGGCCGGCGCCCCCTTCAC GAGCGTGGTTGGCGTGAGGCCCACGGGATGGACGCATCACAACACAGCGA AGGAAGGAGAGCAAGTGGCGAAAGAGGCGACGAAGCGGGCACGAGCTCTT GAGATAGCGGAAGTTGGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig1823:17809..20629+

>mRNA_H-paniculata_contig1823.4440.1 ID=mRNA_H-paniculata_contig1823.4440.1|Name=mRNA_H-paniculata_contig1823.4440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1986bp|location=Sequence derived from alignment at H-paniculata_contig1823:17809..20629+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTCTCTCAAATTCCCAGTCAACACACCACTACCCGATACCAGCTGCTAC
CATGGCGCTACAAGACGAGAAAATCAAGTGGGTTGAGGGAACACCTTTTA
TGGTCGATGGATTCAGGTTCACTAATCCTCGGTGTCGCCATTACTTTCTG
ACCCACTTTCATTCAGACTCTCTCAAATTCCCAGTCAACACACCACTACC
CGATACCAGCTGCTACCATGGCGCTACAAGACGAGAAAATCAAGTGGGTT
GAGGGAACACCTTTTATGGTCGATGGATTCAGGTTCACTAATCCTCGGTG
TCGCCATTACTTTCTGACCCACTTTCATTCAGACCACACGACGGGACTGT
ACAAGTCGTTCTCGGCGGGAACTATCTACGCTTCTCAGGGCACCGCCAAC
TTGGTGACGGCGCTCATTGGAGTCAACCCCAAGCGAGTGGTTGCGTTGCC
GATGAACAAGCAGGTCATGGTTGCTGGGTTCGAGATCACACTCGTTGACG
CCAACCATTGCCCAGCCGCGGTCATACCACACGACGGGACTGTACAAGTC
GTTCTCGGCGGGAACTATCTACGCTTCTCAGGGCACCGCCAACTTGGTGA
CGGCGCTCATTGGAGTCAACCCCAAGCGAGTGGTTGCGTTGCCGATGAAC
AAGCAGGTCATGGTTGCTGGGTTCGAGATCACACTCGTTGACGCCAACCA
TTGCCCAGCCGCGGTCATGTTCATCATTCGAGATCCAAACCCCGGAGGTC
GCGTCACTTGCCACACTGGTGACTTCCGGGCGGACAGCTCTGTGTGCACA
AACCCCATCATAAAGTCCCTCAGAGGGCGTTTAGATTCGCTGTACCTCGA
CACAACTTACTGCGGCCCACGCCACGCATTTCCAGAACAACAGGAGGTTC
ATCATTCGAGATCCAAACCCCGGAGGTCGCGTCACTTGCCACACTGGTGA
CTTCCGGGCGGACAGCTCTGTGTGCACAAACCCCATCATAAAGTCCCTCA
GAGGGCGTTTAGATTCGCTGTACCTCGACACAACTTACTGCGGCCCACGC
CACGCATTTCCAGAACAACAGGAGGTACTGGCGCAAGCTGCAATTCTGGT
GCGAATGGAGCTGCGAAAAGACCCCAACACCCTCTTTCTTGTAGGAACGT
ACTCCATCGGGAAGGAAAAGGTGCTCGAGGCCGTGGCGAAAGCGGCAGGT
AGCCGGTACTGGCGCAAGCTGCAATTCTGGTGCGAATGGAGCTGCGAAAA
GACCCCAACACCCTCTTTCTTGTAGGAACGTACTCCATCGGGAAGGAAAA
GGTGCTCGAGGCCGTGGCGAAAGCGGCAGGTAGCCGGTGCCTCGTCACTA
GCCGAAAAGCACGCATTATGCGTCTAAGCGGTGCCTGGGATGATACCGTA
TACACTACTCACGATGCTGGTGCGGGCGGCGTAGACAGCAAACACGCGTG
CGTCCACGCCGTACCTCTCCAAGTGCTACACACCCCAGCTACCCTCCTCG
GTGCCCTGGCCGAAGCTCAAGCGGCCGGCGCCCCCTTCACGAGCGTGGTT
GGCGTGAGGCCCACGGGATGGACGCATCACAACACAGCGAAGGAAGGAGA
GCAAGTGGCGAAAGAGGCGACGAAGCGGGCACGAGCTCTTGAGATAGCGG
AAGTTGGGGTGGTGCCTCGTCACTAGCCGAAAAGCACGCATTATGCGTCT
AAGCGGTGCCTGGGATGATACCGTATACACTACTCACGATGCTGGTGCGG
GCGGCGTAGACAGCAAACACGCGTGCGTCCACGCCGTACCTCTCCAAGTG
CTACACACCCCAGCTACCCTCCTCGGTGCCCTGGCCGAAGCTCAAGCGGC
CGGCGCCCCCTTCACGAGCGTGGTTGGCGTGAGGCCCACGGGATGGACGC
ATCACAACACAGCGAAGGAAGGAGAGCAAGTGGCGAAAGAGGCGACGAAG
CGGGCACGAGCTCTTGAGATAGCGGAAGTTGGGGTG
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