mRNA_H-paniculata_contig1823.4440.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: D8LUD2_ECTSI (DRMBL domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUD2_ECTSI) HSP 1 Score: 379 bits (974), Expect = 1.500e-123 Identity = 194/291 (66.67%), Postives = 214/291 (73.54%), Query Frame = 1
Query: 52 MALQDEKIKWVEGTPFMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGGRVTCHTGDFRADSSVCTNPIIKSLRGRLDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKARIMRLSGAWDDTVYTTHDAGAGGVDSKHACVHAVPLQVLHTPATLLGALAEAQAAGAPFTSVVGVRPTGWTHHNTAK 924
MA QDEKIKWVEG+PFMVDGFRFTNPRCRHY LTHFHSDHTTGLYKSFSAG IY S GTANL+ L+GVN +RVVALPM+ V+VAGF++TL+DANHCPAAVMF+IRDP PGGR T HTGDFRA SVC NP++KSL+GRLDSLYLDTTYCGPRH FP+Q EVLAQA LVRMEL++DPNTLFLVGTYSIGKEKVLEAVAK DT ++PATL AL +A+A GAPFTSVVGVRPTGWTH N K
Sbjct: 1 MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFDLTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVVKSLKGRLDSLYLDTTYCGPRHTFPDQSEVLAQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAK-----------------------DT---------------------------NSPATLREALTKARAGGAPFTSVVGVRPTGWTHTNARK 241
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: A0A8J9WR85_9CHLO (Probable DNA cross-link repair 1A protein at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WR85_9CHLO) HSP 1 Score: 232 bits (592), Expect = 2.950e-66 Identity = 132/291 (45.36%), Postives = 174/291 (59.79%), Query Frame = 1
Query: 52 MALQDEKIKWVEGTPFMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGG-----RVTCHTGDFRADSSVCTNPIIKSLRGRLDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKARIMRLSGAWD-DTVYTTHDAGAGGVDSKHACVHAVPLQVLHTPATLLGALAEAQAAGAPFTSVVGVRPTGWT 906
MA Q E IKWV TPFMVDGFRF PRC+HY+L+H+HSDHT GL SFSAGTIY S+ TANL+ + +NP + LP++ ++V G +TL+DANHCP AV+F+ + P P G +V HTGD R + +P + + R+D L+LDTTY P+H FP Q+ +A ++R E P TLF+VG+Y IGKE+ AKA G + V + K R++RL G D D T DA A A +H + L TP AL E + G +T VV RPTGW+
Sbjct: 1 MAEQVENIKWVPNTPFMVDGFRFQTPRCKHYWLSHYHSDHTIGLSTSFSAGTIYCSKVTANLLVKDMRINPSCIQPLPLDTPLLVDGVHVTLIDANHCPGAVLFLFKTPAPPGSEFPEQVILHTGDMRWHPRMGRHPALA--KQRIDMLFLDTTYASPKHVFPCQENAIADIVKVMRKERDAHPRTLFIVGSYRIGKERAYLGAAKALGWKVYVNADKLRVLRLLGLPDSDMALLTKDAAA-------AQIHVSFMGKLLTP----DALTE-RIRGTKWTHVVAFRPTGWS 277
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: I0YMI9_COCSC (DRMBL-domain-containing protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YMI9_COCSC) HSP 1 Score: 217 bits (553), Expect = 3.460e-65 Identity = 123/281 (43.77%), Postives = 170/281 (60.50%), Query Frame = 1
Query: 82 VEGTPFMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGG-----RVTCHTGDFRADSSVCTNPIIKSLRGRLDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKARIMRLSGAWD-DTVYTTHDAGAGGVDSKHACVHAVPLQVLHTPATLLGALAEAQAAGAPFTSVVGVRPTGWT 906
V T FMVDGFRF + RC+HY+L+H+HSDHTTGL SFS+GTIY S TANL+ + +NP + LP+N ++V G +TL+DANHCP AV+F+ + P P G +V HTGD R + +P +K+ R +D L+LDTTY P+H FP Q++ +A +++ E + P TLF++G+Y IGKE+ AKA G + V + K R++RL G + D T DA A A +H + L TP AL + AG P+T VV RPTGW+
Sbjct: 1 VPNTRFMVDGFRFQSSRCKHYWLSHYHSDHTTGLTTSFSSGTIYCSAVTANLLVKDMHINPSCIQPLPLNIPLLVDGINVTLIDANHCPGAVLFLFKTPPPPGSEFSEQVILHTGDMRWHPRMGRHPALKNQR--IDMLFLDTTYASPKHVFPCQEDAIADIVRVMKQEAKARPGTLFIMGSYRIGKERAYLGAAKALGWKVHVNADKLRVLRLLGLPENDMALLTRDAAA-------ARIHVSFMGKLLTP----DALTDRIRAG-PWTHVVAFRPTGWS 267
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: A0A1Y1HYN4_KLENI (Putative DNA repair metallo-beta-lactamase family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HYN4_KLENI) HSP 1 Score: 230 bits (586), Expect = 1.150e-64 Identity = 131/301 (43.52%), Postives = 173/301 (57.48%), Query Frame = 1
Query: 52 MALQDEKIKWVEGTPFMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGGR---VTCHTGDFRADSSVCTNPIIKSLRGRL-DSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKARIMRLSGAWDDTVYTTHDAGAGGVDSKHACVHAVPLQVLHTPATLLGALAEAQAAGAPFTSVVGVRPTGWTHH----NTAKEG 930
MALQ E IKW+ GT FMVDGF+F N RCR YFLTHFHSDHT GLY+SF++GTI+ S+ TA L+ +G+ + LPM+K V + G E+T +DANHCP +VM + + P GGR V HTGDFR + P SLR L D++YLDTTY PRH FP Q++ +A L R L + LF+ G Y IGKE+ + AKA G R + RK RI+ L D ++T + A A +H + + PA L + G + V+G RPTGW+ +T K+G
Sbjct: 1 MALQQEAIKWIAGTDFMVDGFKFQNLRCRRYFLTHFHSDHTIGLYRSFNSGTIFCSRITAALLINCMGLRSDCIQVLPMDKTVTIDGVEVTALDANHCPGSVMLLFKVPGHGGRPAQVILHTGDFRYHERMADYP---SLRNTLIDTIYLDTTYAYPRHTFPSQEDAIATTVRLCRKHLLDEARPLFVFGAYQIGKERAVIGAAKALGLRVHIEPRKRRILSLLDLQDMDLFTPNAADAD--------IHLGFMSEVRPPAMLR----RLKEGGGKWAQVIGFRPTGWSFRKDGVHTTKQG 286
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: A0A4D9CSH8_9STRA (DRMBL domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSH8_9STRA) HSP 1 Score: 206 bits (523), Expect = 3.020e-58 Identity = 110/238 (46.22%), Postives = 143/238 (60.08%), Query Frame = 1
Query: 52 MALQDEKIKWVEGTPFMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGGRVTCHTGDFRADSSVCTNPIIKSLRGR---LDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKARIMRLSGAWDDTVYTTHDAGA 756
MA Q E+IKW+EGT F+VDGF F +P+C YFLTHFHSDH GL SF GTIY S T L+ +GV P+ V LP+ K + G E+TL+DANHCP AVM + + + HTGDFRA S T LR R + +LYLDTTYC ++ FP Q VLA + + E + P+T+F VGTYSIGKE+ + AVA G + K R +RL+ WD+ V+ + G+
Sbjct: 1 MASQVERIKWIEGTSFLVDGFNFLSPKCSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTNTTIL-HTGDFRA-SEALTERTASWLRDRDLRVRTLYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIG-KVYADKHKERTLRLASEWDEEVFVSEMEGS 235
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: A0A8J5XFD5_DIALT (SWIM-type domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XFD5_DIALT) HSP 1 Score: 207 bits (527), Expect = 2.200e-56 Identity = 114/223 (51.12%), Postives = 141/223 (63.23%), Query Frame = 1
Query: 97 FMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGGRVTCHTGDFRADSSVCTNPIIKSL--RGRLDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKARIMRLSGAWDDTVYTTHDAGAG 759
F+VDGF F P YFLTH+H DHT GL SF AGTIY SQ TANLV A+ V+ KRVVAL +++ +V G E+T DANHCP AV R+P G HTGDFRA+ VC +P + L G +D+L+LDTTYC PR FP Q VLA L R EL ++P TLFL+G+Y IGKE+ + A+A A GS V+ +AR +RL G W D T +A G
Sbjct: 19 FIVDGFSFQRPDLTAYFLTHYHGDHTVGLNASFCAGTIYCSQITANLVIAVGLVDAKRVVALALDETSLVDGVEVTPFDANHCPGAVCLHFRNPRTGA-TALHTGDFRAERCVCESPTLARLLAAGPVDTLFLDTTYCAPRWRFPAQAAVLASLRDLARAELAREPLTLFLIGSYEIGKERAVFALASALGSPVDVSDARARKLRLCGWWRDGWVVTGEAAEG 240
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: W7THR8_9STRA (Dna cross-link repair 1a protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THR8_9STRA) HSP 1 Score: 193 bits (491), Expect = 4.460e-55 Identity = 103/217 (47.47%), Postives = 132/217 (60.83%), Query Frame = 1
Query: 52 MALQDEKIKWVEGTPFMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGGRVTCHTGDFRADSSVC--TNPIIKSLRGRLDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKAR 696
MA Q E+IKW+EGT F+VDGF F +P+C YFLTHFHSDH GL SF GTIY S T L+ +GV P+ V LP+ K + G E+TL+DANHCP AVM + + + HTGDFRA ++ T I+ R+ LYLDTTYC ++ FP Q VLA + + E + P+T+F VGTYSIGKE+ + AVA G L + AR
Sbjct: 1 MASQVERIKWIEGTSFLVDGFNFLSPKCSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTKSTIL-HTGDFRASEALTERTASWIRDRDLRVRILYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIGWSYLRNRKTAR 216
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: A0A7S2WP51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WP51_9STRA) HSP 1 Score: 185 bits (470), Expect = 2.410e-54 Identity = 100/196 (51.02%), Postives = 120/196 (61.22%), Query Frame = 1
Query: 52 MALQDEKIKWVEG--TPFMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGGRVTCHTGDFRADSSVCTNPIIKSL--RGRLDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGK 627
MA Q IK V G + F+VDGF F C+ YFLTH+H DHTTGL+ F GTIY S+ TA LV +GV K V LP+++ V G + VDA HCP AVMF DP G RV H GDFRA+ V +P + + RG LD LYLDTTYC P H FP+Q VL +VR EL ++ TLF+VGTY IGK
Sbjct: 3 MAAQTSSIKAVRGLSSRFIVDGFNFVEAECKSYFLTHYHGDHTTGLHAGFDLGTIYCSEVTARLVVHDLGVASKLVCVLPLHEWTTVEGVHVMPVDACHCPGAVMFFFDDPTAGRRVL-HCGDFRAEECVVESPHLAAALARGPLDELYLDTTYCRPTHTFPDQPAVLRDVEAIVRHELGQERRTLFVVGTYQIGK 197
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: A0A2P6TNP6_CHLSO (DNA cross-link repair SNM1 isoform X1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TNP6_CHLSO) HSP 1 Score: 199 bits (506), Expect = 3.200e-54 Identity = 122/292 (41.78%), Postives = 166/292 (56.85%), Query Frame = 1
Query: 46 ATMALQDEKIKWVEGTPFMVDGFRFTNPRCRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDP--NPGGR--VTCHTGDFRADSSVCTNPIIKSLRGRLDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKARIMRLSGAWDDTVYTTHDAGAGGVDSKHACVHAVPL-QVLHTPATLLGALAEAQAAGAPFTSVVGVRPTGWT 906
A MA Q E IKWV GT F+VDGFRF +P CR YFLTH HSDHTTGL KSF+AG IY S TA ++ G+ P + L +++ +AG E+T +DANHCP A MF+ + P +PG + V HTGD R + +P +K + +D L LDTTYC PR + P Q EV+A A + +P TLF+VG+Y IGKE+ A A G R T K R++RL G + + + + A +H + + + LH A LA+ + G + V ++PTGWT
Sbjct: 425 AAMASQVEAIKWVPGTKFLVDGFRFQHPNCRAYFLTHAHSDHTTGLSKSFNAGPIYCSPVTARVLRHDFGLRPDCLRVLELDETATIAGVEVTPMDANHCPGAAMFLFKVPPSSPGSKAQVILHTGDMRWQPWMAEHPALKGQQ--VDILILDTTYCTPRWSLPPQSEVVAAMAEHMAAAAAAEPATLFVVGSYHIGKERAYLGAAAALGWRVHCTPTKHRLLRLLGLPAEWLALLTE------QPEEAQIHVLSMGEQLHEQA-----LAD-RIEGTAWKRAVALKPTGWT 702
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Match: A0A565BS29_9BRAS (DRMBL domain-containing protein n=7 Tax=Brassicaceae TaxID=3700 RepID=A0A565BS29_9BRAS) HSP 1 Score: 187 bits (476), Expect = 5.620e-52 Identity = 113/289 (39.10%), Postives = 161/289 (55.71%), Query Frame = 1
Query: 76 KWVEGTPFMVDGFRFTNPR-CRHYFLTHFHSDHTTGLYKSFSAGTIYASQGTANLVTALIGVNPKRVVALPMNKQVMVAGFEITLVDANHCPAAVMFIIRDPNPGGRVTCHTGDFRADSSVCTNPIIKSLRGRLDSLYLDTTYCGPRHAFPEQQEVLAQAAILVRMELRKDPNTLFLVGTYSIGKEKVLEAVAKAAGSRCLVTSRKARIMRLSGAWDDTVYTTHDAGAGGVDSKHACVHAVPLQVLHTPATLLGALAEAQAAGAPFTSVVGVRPTGWTHHNTAKEGEQV 939
K + GTPF VD FR+ + C YFLTHFH+DH GL K++S G IY S T+ L+ + +NP + L ++ + V G ++TL++ANHCP A + R + G HTGDFRA + T+P++ RL LYLDTTYC PR+ FP +++VL+ + + LRK P TL +VG+YSIGKE V A+AKA G + + + RI++ G WDD D K C+H +P+ L + + GA V+ RPTGWT+ + K GE +
Sbjct: 147 KKLPGTPFTVDAFRYGCVQGCSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLLRRSLSINPSFIHPLELDVEYTVNGIKVTLIEANHCPGAALIHFRLLD--GTCYLHTGDFRASKQMQTHPLL--FNQRLHVLYLDTTYCNPRYKFPSKEDVLSYVVRIAKEFLRKQPKTLIVVGSYSIGKECVYLAIAKALGVKIFANASRRRILQSFG-WDDISKNLC------TDGKATCLHVLPMSSLRVEKLVEHLKVYREQYGA----VLAFRPTGWTY--SEKIGEHL 418 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1823.4440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1823.4440.1 >prot_H-paniculata_contig1823.4440.1 ID=prot_H-paniculata_contig1823.4440.1|Name=mRNA_H-paniculata_contig1823.4440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=331bp TLSNSQSTHHYPIPAATMALQDEKIKWVEGTPFMVDGFRFTNPRCRHYFLback to top mRNA from alignment at H-paniculata_contig1823:17809..20629+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1823.4440.1 ID=mRNA_H-paniculata_contig1823.4440.1|Name=mRNA_H-paniculata_contig1823.4440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2821bp|location=Sequence derived from alignment at H-paniculata_contig1823:17809..20629+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1823:17809..20629+ >mRNA_H-paniculata_contig1823.4440.1 ID=mRNA_H-paniculata_contig1823.4440.1|Name=mRNA_H-paniculata_contig1823.4440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1986bp|location=Sequence derived from alignment at H-paniculata_contig1823:17809..20629+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |