mRNA_H-paniculata_contig18201.4426.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: D7G800_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G800_ECTSI) HSP 1 Score: 236 bits (601), Expect = 7.730e-73 Identity = 115/164 (70.12%), Postives = 136/164 (82.93%), Query Frame = 2
Query: 206 MSYWQHHDPVALADALGQATQILVDATDASRGGAVVEQIPYVPSDTSGIPDFPKIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARAAKC-QGSGSTPDD 694
M +++ D ++ +A+ AT IL A D+SRGGAVVEQIPYVP D + DF KIV+GSAACLAAYAWAAYEFG+RIVTQRACEVC GSGLVS +RSG +L+QP+KCYACGGFLPWE+WGKFW++NMDVGNGGVLQRPA DYDELN+ ARAAK + + ST DD
Sbjct: 1 MMHFEAADGASVIEAMDHATWILAVAADSSRGGAVVEQIPYVPGD---VADFDKIVIGSAACLAAYAWAAYEFGKRIVTQRACEVCKGSGLVSTSRSGKQLRQPKKCYACGGFLPWESWGKFWKTNMDVGNGGVLQRPARDYDELNEAARAAKDGRTTPSTEDD 161
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: A0A6H5JMD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMD9_9PHAE) HSP 1 Score: 235 bits (599), Expect = 8.130e-72 Identity = 111/153 (72.55%), Postives = 130/153 (84.97%), Query Frame = 2
Query: 206 MSYWQHHDPVALADALGQATQILVDATDASRGGAVVEQIPYVPSDTSGIPDFPKIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARAAK 664
M +++ D ++ +A+ AT IL A D+SRGGAVVEQIPYVP D + DF KIV+GSAACLAAYAWAAYEFG+RIVTQRACEVC GSGLVS +RSG +L+QP+KCYACGGFLPWE+WGKFW++NMDVGNGGVLQRPA DYDELN+ ARAAK
Sbjct: 51 MMHFEAADGASVIEAIDHATWILAVAADSSRGGAVVEQIPYVPGD---VADFDKIVIGSAACLAAYAWAAYEFGKRIVTQRACEVCKGSGLVSTSRSGKQLRQPKKCYACGGFLPWESWGKFWKTNMDVGNGGVLQRPARDYDELNEAARAAK 200
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: A0A835Z783_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z783_9STRA) HSP 1 Score: 163 bits (413), Expect = 7.240e-45 Identity = 81/143 (56.64%), Postives = 99/143 (69.23%), Query Frame = 2
Query: 239 LADALGQATQILVDATDASRGGAVVE-QIPYVPSDTSGIPDFPKIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARAAK 664
L DAL T + + G + Q YVP D + +FP+IV GSAA + Y WA YEFG RIVTQRAC VC GSGLV+ +R+G +L QPRKCYACGGFLPWE+W +FW +N VGNGG+L+RPA+DYDELN AR A+
Sbjct: 5 LGDALSAVTLLAESLKEVPGLGIPAQPQNVYVPPDQ--VDNFPQIVAGSAAGVLVYLWALYEFGSRIVTQRACAVCNGSGLVTVSRTGRKLMQPRKCYACGGFLPWESWSRFWVANKYVGNGGILRRPAADYDELNAKAREAQ 145
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: I2CSA8_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSA8_NANGC) HSP 1 Score: 124 bits (312), Expect = 2.290e-30 Identity = 55/109 (50.46%), Postives = 72/109 (66.06%), Query Frame = 2
Query: 365 KIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARAAKCQGSGSTPD 691
++ +G A + + WA +EF +RI Q+ C VC GSGLV SG L PRKCYACGGFLPW W +FW SN+D+GNGGVLQRPA+DY+ L++ A+ + G D
Sbjct: 43 QLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAKRRRAGREGGRAD 151
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: W7TBR1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBR1_9STRA) HSP 1 Score: 124 bits (310), Expect = 5.400e-29 Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = 2
Query: 365 KIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARAAKCQG 673
++ +G A + + WA +EF +RI Q+ C VC GSGLV SG L PRKCYACGGFLPW W +FW SN+D+GNGGVLQRPA+DY+ L++ A+ + G
Sbjct: 141 QLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAKRRRAGG 243
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: A0A7S2V7K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7K2_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.050e-26 Identity = 63/164 (38.41%), Postives = 88/164 (53.66%), Query Frame = 2
Query: 185 KCSRTDMMSYWQHHDPVAL------ADALGQATQILVDATDASRGGAVVEQIPYVPSDTSGIPDFPKIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARA 658
+CS S Q P+ L A QA L+ A + S E P I P++ + + AC+ + WAAYEF R Q C VC G+GLV T +G L PRKCYACGGF+P+ +W +F+ +N +GNGG+L+RPA +Y+EL+ A+A
Sbjct: 33 RCSPQSARSLNQAAAPIGLQMSNQVTSAASQAISSLLLADEVSSAATKFEPGP--------IEVGPELWIANGACVLVFLWAAYEFWSRFDVQGRCGVCQGTGLVMETSTGIPLSNPRKCYACGGFVPFVSWRQFFFANTQIGNGGILRRPAKNYEELSAAAKA 188
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: A0A4D9CUP8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUP8_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 5.250e-20 Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query: 365 KIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGG 604
++ +G A + + WA +EF +RI Q+ C VC GSGLV SG L PRKCYACGGFLPW W +FW SN+D+GNGG
Sbjct: 141 QLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGG 220
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: A0A5J4XF27_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XF27_9CHLO) HSP 1 Score: 89.4 bits (220), Expect = 4.370e-17 Identity = 64/192 (33.33%), Postives = 87/192 (45.31%), Query Frame = 2
Query: 92 CHAFRTTRTLTARFSKRIDKTRHNRQRYSLSKCSRTDMMSYWQHHDPVALADALGQATQILVDATDASRGGAVVEQIPYVPSDTS-GIPDFPKIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARAAK 664
CH TR+ F + D +S+ CSRT M Y P ++ A + A+ E YVPS S G +I G+ A + +A +Y+F RI+ QR CE C GSGLV G L RKC CGGF PW+ W +F S GNGGVL++P + + ++ AK
Sbjct: 9 CHVKHPTRSCQRSFVQGRD--------HSVHSCSRTRQMPYQSKQLPCSMQSQFCGAVLLAFIASGNHNAAFAAESQGYVPSPVSVGW----EIYAGAIAGVIPFAIGSYQFIARILIQRRCEKCNGSGLVER---GPFL---RKCPECGGFFPWQGWKQFLTSTAAPGNGGVLRQPRNQEGVIYRIPPKAK 182
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: A0A7S0KNB9_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KNB9_MICPS) HSP 1 Score: 89.0 bits (219), Expect = 1.050e-16 Identity = 53/129 (41.09%), Postives = 72/129 (55.81%), Query Frame = 2
Query: 278 DATDASRGGAVVEQIPYVPSDTSGIPDFPKIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARAAK 664
DA D ++ + + SDT GIP++ +I G A L+ + AAYEFG+RI+ QR CE+CGGSGL+ R RKC +CGGFLPW++W F+ S D GNG ++ P V A K
Sbjct: 64 DAVDTFAASSMADAL----SDT-GIPEW-QIYYGFIAGLSPFVIAAYEFGKRIIIQRQCELCGGSGLIQKGR------YSRKCTSCGGFLPWQSWELFFTS--DAGNGSRVRAPKGQTSVFYDVEAARK 178
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: A0A7R9TTR7_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TTR7_MICPS) HSP 1 Score: 89.0 bits (219), Expect = 1.900e-16 Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 2
Query: 335 SDTSGIPDFPKIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARAAK 664
SDT G+P++ +I G+ A L+ + AAYEFG+RI+ QR CE+C GSGL+ R RKC +CGGFLPWE+W F+ S + GNGG L++P V A +
Sbjct: 122 SDT-GVPEW-QIYYGAVAGLSPFVIAAYEFGKRILIQRRCELCQGSGLIKRGR------YSRKCTSCGGFLPWESWELFFTS--EAGNGGALRQPKGQTSAFYDVDAATE 221 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18201.4426.1 >prot_H-paniculata_contig18201.4426.1 ID=prot_H-paniculata_contig18201.4426.1|Name=mRNA_H-paniculata_contig18201.4426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=222bp MKVLARYVAVWLIIGCCHAFRTTRTLTARFSKRIDKTRHNRQRYSLSKCSback to top mRNA from alignment at H-paniculata_contig18201:1997..4711- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18201.4426.1 ID=mRNA_H-paniculata_contig18201.4426.1|Name=mRNA_H-paniculata_contig18201.4426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2715bp|location=Sequence derived from alignment at H-paniculata_contig18201:1997..4711- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18201:1997..4711- >mRNA_H-paniculata_contig18201.4426.1 ID=mRNA_H-paniculata_contig18201.4426.1|Name=mRNA_H-paniculata_contig18201.4426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1332bp|location=Sequence derived from alignment at H-paniculata_contig18201:1997..4711- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |