mRNA_H-paniculata_contig18201.4426.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18201.4426.1
Unique NamemRNA_H-paniculata_contig18201.4426.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: D7G800_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G800_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 7.730e-73
Identity = 115/164 (70.12%), Postives = 136/164 (82.93%), Query Frame = 2
Query:  206 MSYWQHHDPVALADALGQATQILVDATDASRGGAVVEQIPYVPSDTSGIPDFPKIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARAAKC-QGSGSTPDD 694
            M +++  D  ++ +A+  AT IL  A D+SRGGAVVEQIPYVP D   + DF KIV+GSAACLAAYAWAAYEFG+RIVTQRACEVC GSGLVS +RSG +L+QP+KCYACGGFLPWE+WGKFW++NMDVGNGGVLQRPA DYDELN+ ARAAK  + + ST DD
Sbjct:    1 MMHFEAADGASVIEAMDHATWILAVAADSSRGGAVVEQIPYVPGD---VADFDKIVIGSAACLAAYAWAAYEFGKRIVTQRACEVCKGSGLVSTSRSGKQLRQPKKCYACGGFLPWESWGKFWKTNMDVGNGGVLQRPARDYDELNEAARAAKDGRTTPSTEDD 161          
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: A0A6H5JMD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMD9_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 8.130e-72
Identity = 111/153 (72.55%), Postives = 130/153 (84.97%), Query Frame = 2
Query:  206 MSYWQHHDPVALADALGQATQILVDATDASRGGAVVEQIPYVPSDTSGIPDFPKIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARAAK 664
            M +++  D  ++ +A+  AT IL  A D+SRGGAVVEQIPYVP D   + DF KIV+GSAACLAAYAWAAYEFG+RIVTQRACEVC GSGLVS +RSG +L+QP+KCYACGGFLPWE+WGKFW++NMDVGNGGVLQRPA DYDELN+ ARAAK
Sbjct:   51 MMHFEAADGASVIEAIDHATWILAVAADSSRGGAVVEQIPYVPGD---VADFDKIVIGSAACLAAYAWAAYEFGKRIVTQRACEVCKGSGLVSTSRSGKQLRQPKKCYACGGFLPWESWGKFWKTNMDVGNGGVLQRPARDYDELNEAARAAK 200          
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: A0A835Z783_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z783_9STRA)

HSP 1 Score: 163 bits (413), Expect = 7.240e-45
Identity = 81/143 (56.64%), Postives = 99/143 (69.23%), Query Frame = 2
Query:  239 LADALGQATQILVDATDASRGGAVVE-QIPYVPSDTSGIPDFPKIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARAAK 664
            L DAL   T +     +    G   + Q  YVP D   + +FP+IV GSAA +  Y WA YEFG RIVTQRAC VC GSGLV+ +R+G +L QPRKCYACGGFLPWE+W +FW +N  VGNGG+L+RPA+DYDELN  AR A+
Sbjct:    5 LGDALSAVTLLAESLKEVPGLGIPAQPQNVYVPPDQ--VDNFPQIVAGSAAGVLVYLWALYEFGSRIVTQRACAVCNGSGLVTVSRTGRKLMQPRKCYACGGFLPWESWSRFWVANKYVGNGGILRRPAADYDELNAKAREAQ 145          
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: I2CSA8_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSA8_NANGC)

HSP 1 Score: 124 bits (312), Expect = 2.290e-30
Identity = 55/109 (50.46%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  365 KIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARAAKCQGSGSTPD 691
            ++ +G  A +  + WA +EF +RI  Q+ C VC GSGLV    SG  L  PRKCYACGGFLPW  W +FW SN+D+GNGGVLQRPA+DY+ L++ A+  +    G   D
Sbjct:   43 QLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAKRRRAGREGGRAD 151          
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: W7TBR1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBR1_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.400e-29
Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = 2
Query:  365 KIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARAAKCQG 673
            ++ +G  A +  + WA +EF +RI  Q+ C VC GSGLV    SG  L  PRKCYACGGFLPW  W +FW SN+D+GNGGVLQRPA+DY+ L++ A+  +  G
Sbjct:  141 QLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGGVLQRPAADYEALSEAAKRRRAGG 243          
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: A0A7S2V7K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7K2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.050e-26
Identity = 63/164 (38.41%), Postives = 88/164 (53.66%), Query Frame = 2
Query:  185 KCSRTDMMSYWQHHDPVAL------ADALGQATQILVDATDASRGGAVVEQIPYVPSDTSGIPDFPKIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARA 658
            +CS     S  Q   P+ L        A  QA   L+ A + S      E  P        I   P++ + + AC+  + WAAYEF  R   Q  C VC G+GLV  T +G  L  PRKCYACGGF+P+ +W +F+ +N  +GNGG+L+RPA +Y+EL+  A+A
Sbjct:   33 RCSPQSARSLNQAAAPIGLQMSNQVTSAASQAISSLLLADEVSSAATKFEPGP--------IEVGPELWIANGACVLVFLWAAYEFWSRFDVQGRCGVCQGTGLVMETSTGIPLSNPRKCYACGGFVPFVSWRQFFFANTQIGNGGILRRPAKNYEELSAAAKA 188          
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: A0A4D9CUP8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUP8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 5.250e-20
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  365 KIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGG 604
            ++ +G  A +  + WA +EF +RI  Q+ C VC GSGLV    SG  L  PRKCYACGGFLPW  W +FW SN+D+GNGG
Sbjct:  141 QLWVGFIAGVFPFVWAGFEFWKRIDVQQRCGVCQGSGLVYENASGKSLSVPRKCYACGGFLPWAGWRRFWLSNLDIGNGG 220          
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: A0A5J4XF27_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XF27_9CHLO)

HSP 1 Score: 89.4 bits (220), Expect = 4.370e-17
Identity = 64/192 (33.33%), Postives = 87/192 (45.31%), Query Frame = 2
Query:   92 CHAFRTTRTLTARFSKRIDKTRHNRQRYSLSKCSRTDMMSYWQHHDPVALADALGQATQILVDATDASRGGAVVEQIPYVPSDTS-GIPDFPKIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARAAK 664
            CH    TR+    F +  D        +S+  CSRT  M Y     P ++      A  +   A+         E   YVPS  S G     +I  G+ A +  +A  +Y+F  RI+ QR CE C GSGLV     G  L   RKC  CGGF PW+ W +F  S    GNGGVL++P +    + ++   AK
Sbjct:    9 CHVKHPTRSCQRSFVQGRD--------HSVHSCSRTRQMPYQSKQLPCSMQSQFCGAVLLAFIASGNHNAAFAAESQGYVPSPVSVGW----EIYAGAIAGVIPFAIGSYQFIARILIQRRCEKCNGSGLVER---GPFL---RKCPECGGFFPWQGWKQFLTSTAAPGNGGVLRQPRNQEGVIYRIPPKAK 182          
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: A0A7S0KNB9_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KNB9_MICPS)

HSP 1 Score: 89.0 bits (219), Expect = 1.050e-16
Identity = 53/129 (41.09%), Postives = 72/129 (55.81%), Query Frame = 2
Query:  278 DATDASRGGAVVEQIPYVPSDTSGIPDFPKIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARAAK 664
            DA D     ++ + +    SDT GIP++ +I  G  A L+ +  AAYEFG+RI+ QR CE+CGGSGL+   R        RKC +CGGFLPW++W  F+ S  D GNG  ++ P         V  A K
Sbjct:   64 DAVDTFAASSMADAL----SDT-GIPEW-QIYYGFIAGLSPFVIAAYEFGKRIIIQRQCELCGGSGLIQKGR------YSRKCTSCGGFLPWQSWELFFTS--DAGNGSRVRAPKGQTSVFYDVEAARK 178          
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Match: A0A7R9TTR7_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TTR7_MICPS)

HSP 1 Score: 89.0 bits (219), Expect = 1.900e-16
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  335 SDTSGIPDFPKIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTRSGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELNKVARAAK 664
            SDT G+P++ +I  G+ A L+ +  AAYEFG+RI+ QR CE+C GSGL+   R        RKC +CGGFLPWE+W  F+ S  + GNGG L++P         V  A +
Sbjct:  122 SDT-GVPEW-QIYYGAVAGLSPFVIAAYEFGKRILIQRRCELCQGSGLIKRGR------YSRKCTSCGGFLPWESWELFFTS--EAGNGGALRQPKGQTSAFYDVDAATE 221          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18201.4426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G800_ECTSI7.730e-7370.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMD9_9PHAE8.130e-7272.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z783_9STRA7.240e-4556.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
I2CSA8_NANGC2.290e-3050.46Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
W7TBR1_9STRA5.400e-2952.43Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S2V7K2_9STRA1.050e-2638.41Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9CUP8_9STRA5.250e-2053.75Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A5J4XF27_9CHLO4.370e-1733.33Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
A0A7S0KNB9_MICPS1.050e-1641.09Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7R9TTR7_MICPS1.900e-1644.55Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18201contigH-paniculata_contig18201:1997..4711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.4
Seed ortholog evalue3.2e-60
Seed eggNOG ortholog2880.D7G800
Hectar predicted targeting categorysignal peptide
EggNOG OGs2CXBB@1,2SA2A@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_009610.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1397
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18201.4426.1prot_H-paniculata_contig18201.4426.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18201 2685..4668 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929415.222157-UTR-H-paniculata_contig18201:1996..26841622929415.222157-UTR-H-paniculata_contig18201:1996..2684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18201 1997..2684 -
1691480851.6054385-UTR-H-paniculata_contig18201:1996..26841691480851.6054385-UTR-H-paniculata_contig18201:1996..2684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18201 1997..2684 -
1622929415.2924268-UTR-H-paniculata_contig18201:4668..47111622929415.2924268-UTR-H-paniculata_contig18201:4668..4711Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18201 4669..4711 -
1691480851.6447036-UTR-H-paniculata_contig18201:4668..47111691480851.6447036-UTR-H-paniculata_contig18201:4668..4711Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18201 4669..4711 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929415.2330158-CDS-H-paniculata_contig18201:2684..27471622929415.2330158-CDS-H-paniculata_contig18201:2684..2747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18201 2685..2747 -
1691480851.6162686-CDS-H-paniculata_contig18201:2684..27471691480851.6162686-CDS-H-paniculata_contig18201:2684..2747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18201 2685..2747 -
1622929415.245771-CDS-H-paniculata_contig18201:3365..35811622929415.245771-CDS-H-paniculata_contig18201:3365..3581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18201 3366..3581 -
1691480851.625203-CDS-H-paniculata_contig18201:3365..35811691480851.625203-CDS-H-paniculata_contig18201:3365..3581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18201 3366..3581 -
1622929415.2769403-CDS-H-paniculata_contig18201:4281..46681622929415.2769403-CDS-H-paniculata_contig18201:4281..4668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18201 4282..4668 -
1691480851.6350684-CDS-H-paniculata_contig18201:4281..46681691480851.6350684-CDS-H-paniculata_contig18201:4281..4668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18201 4282..4668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18201.4426.1

>prot_H-paniculata_contig18201.4426.1 ID=prot_H-paniculata_contig18201.4426.1|Name=mRNA_H-paniculata_contig18201.4426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=222bp
MKVLARYVAVWLIIGCCHAFRTTRTLTARFSKRIDKTRHNRQRYSLSKCS
RTDMMSYWQHHDPVALADALGQATQILVDATDASRGGAVVEQIPYVPSDT
SGIPDFPKIVLGSAACLAAYAWAAYEFGQRIVTQRACEVCGGSGLVSNTR
SGTELKQPRKCYACGGFLPWENWGKFWQSNMDVGNGGVLQRPASDYDELN
KVARAAKCQGSGSTPDDQQIP*
back to top

mRNA from alignment at H-paniculata_contig18201:1997..4711-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18201.4426.1 ID=mRNA_H-paniculata_contig18201.4426.1|Name=mRNA_H-paniculata_contig18201.4426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2715bp|location=Sequence derived from alignment at H-paniculata_contig18201:1997..4711- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACGACCACACTACCCCAAACATCTCTGTACTTGAAGCCACAATGAAGG TGCTCGCACGTTACGTCGCCGTTTGGTTAATCATTGGCTGTTGCCATGCG TTCCGCACCACTCGTACACTAACGGCAAGGTTCAGCAAACGTATCGACAA GACGCGTCACAACCGTCAGAGGTACAGTCTGAGTAAGTGCTCTAGAACAG ACATGATGTCCTATTGGCAACATCATGATCCCGTGGCTTTAGCCGACGCG TTAGGTCAGGCGACGCAAATTTTGGTGGACGCTACGGATGCATCGCGGGG AGGGGCTGTGGTGGAGCAGATTCCCTATGTCCCCAGCGATACTAGTGGCA TTCCCGACTTTCCCAAGATAGTGCTGGGCTCGGCTGCTTGTCTGGCAGCT TACGCATGGGCCGCTTACGAGTTTGGTCAGGTACGATGTGGAGTTTGGTG CTGCTTTGTGAAGTTCGCGGGCTAATGGTTCCAGTCGGGGTGAGGGACTT TTGGGTGCGTAAACGCGATCCGGACAGCACATCGTAGATGTTCATGTACA CGTTCAGTTGGGGTTTCAATGATAAGAATACTGCTAAGCAAATTGTGCTT AGGGTTTTGTTTGAGACCCACAGTATCTGCTTTCTCTCGTGGTACTTTTG ATAGATGGCGCAGGAGACATGTCGATTTCGGAACAGTTTTTAGTACTCTT TCAATCAAGCTGTGTTTTTTCTGTTACGTACGTTGCGAACTCACTGTGCT GCATTGCGACACAGGCCCACTACATACAGCAATGTGAGGACGTAATGATT GTATTTACCACATGGTGGACCGGGAGTTCAATGACTTACGATAATAACAC AGGACGACACTCTTCGTCGCGAACAACTGTACAGAAATTCACTATATTAT TTATGTTGCGTTGATACTCTTCCTTTACATTGAAGTAATTTACACACCTG TTTACAGTTTTATAAATAACATCTGTGGAAGATCGGCTCTCTCGGCATCT TACGTGCTCCCCACAACCCTTTCCTTGCTGGTAAGTGCGTTCGATCGCTC ACCATACCCCCGCGAGGCCGAACTAACCCCCCTCCTGACTCCATGATTCC TCCGTTCCCTTGAAACCCAATGTTACTCAGCGAATTGTAACCCAGAGAGC ATGCGAGGTCTGTGGAGGCTCCGGTTTAGTGAGCAACACACGTTCGGGCA CCGAGCTGAAGCAACCGCGTAAGTGCTATGCTTGCGGTGGCTTCCTTCCC TGGGAAAATTGGGGGAAATTTTGGCAGTCCAACATGGACGTGGGCAACGG GGGGGTGTTGCAGCGTCCAGCCAGCGACTACGACGAGCTCAACAAGGCAA GCCTAGGTTATTTATCTGCTCTCCCAAAGTGCTTATTAACTCAGCTGTGT CAACATGAAGTATATTCGTGCAGCTTCGTTCGCAGTGCCCCCGGATTGAT AGTATCGGCCTCCTTACCGTGCACAATATCAGCATGCGTCACTGATATTG GTCAACAAACACTAGAGACGGTATTGTATTAAAATCTCAGTGGACATCGT CGGAGGCGAGAGATGTTACCGCAATCATTCCAACGTAAGCACACGGTACA TTAAGCGGACGAGGGAAACCGCTACAGTAGCCGAATCCTGCACTCTGTTT CTATTTTGTCTGATCGTAGTGTACAACACTGCTCGTTTCGCTCGGTTCAC GAGGCTGGCTGCAACCGAGGTTCTTGTGTAACGCGTACGACAGACGAAAT AGCCATCATATCTCCTGTTTCGAACGCTCTCCGTATCATCTAGCAACGCA GTTTCGAGCTATGAATAATAGCTAATGGTTTAAATGCAAGAGAAACATCG CTGGGTGAGAATTGTATATGGGTGACTACACTACTGGTGGAAGCATTTCA CCCGTACTCTTCGGGTTATATTTACTGACCGTCTGTCCCCGTGTTATCCG TTCGTTACGTTCAGGTGGCTAGGGCAGCGAAGTGTCAGGGCTCAGGCAGC ACGCCAGACGATCAACAGATACCGTGATTTTATGGTTCGAAAAATCAAAC TGCCAAACAAAAAACGAATTGAAGCGTTGTTTTTCACCGTGATCAGACAT GCGGTACCCCGCCCTCATGTACAAGCTCCGGCTTTCGTACTGATGTAGAT ATCTCAAAGGGCACACCAGCAAAAGAACCGAGCTACGTTTTCAAGAGTGA CACATGATACATTCGGTTGTGCCTCATGGAGCAAAATGGGCGAACAGAAG ATTAGTATTGACGGTTGCTTCAGGTCACTTTTTCCTAGTTCTTCTCGCGT GGCAGGATATACTGATGGCAGTACTGCTGATTCGTATAAAGGTCGTAATC GAGTTTTGGATGCAAGCTACGAGTCCAAAGCGGCGGTCTCCCGCGAATCA TGCCACAAATATTAATGTTTTCTATTATATTCAGGATTTCGTCGGAGTGT GCCCGTATCTCTCTATCCACACGCCGTCTCTTGGCCCCCCAAAAGTTTCC TTGAACGTAGAAAATGAGCGGGGGGCGTGACTGAGACGTATATGGGCCCC ATCGATTTGATCTGAATATTTTAGGTATTATTTATATCGGTTTCAGCTGT TCATTACGTGTATACGCGATGTTTGAATTACAGCTGTTGTTTTTTGGGTA ACGGGAAGGACAACAATTACTGTACTTACTCATATGAGTAAAATTACGAT ACCTTTTTGTTCACC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig18201:1997..4711-

>mRNA_H-paniculata_contig18201.4426.1 ID=mRNA_H-paniculata_contig18201.4426.1|Name=mRNA_H-paniculata_contig18201.4426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1332bp|location=Sequence derived from alignment at H-paniculata_contig18201:1997..4711- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGTGCTCGCACGTTACGTCGCCGTTTGGTTAATCATTGGCTGTTG
CCATGCGTTCCGCACCACTCGTACACTAACGGCAAGGTTCAGCAAACGTA
TCGACAAGACGCGTCACAACCGTCAGAGGTACAGTCTGAGTAAGTGCTCT
AGAACAGACATGATGTCCTATTGGCAACATCATGATCCCGTGGCTTTAGC
CGACGCGTTAGGTCAGGCGACGCAAATTTTGGTGGACGCTACGGATGCAT
CGCGGGGAGGGGCTGTGGTGGAGCAGATTCCCTATGTCCCCAGCGATACT
AGTGGCATTCCCGACTTTCCCAAGATAGTGCTGGGCTCGGCTGCTTGTCT
GGCAGCTTACGCATGGGCCGCTTACGAGTTTGGTCAGATGAAGGTGCTCG
CACGTTACGTCGCCGTTTGGTTAATCATTGGCTGTTGCCATGCGTTCCGC
ACCACTCGTACACTAACGGCAAGGTTCAGCAAACGTATCGACAAGACGCG
TCACAACCGTCAGAGGTACAGTCTGAGTAAGTGCTCTAGAACAGACATGA
TGTCCTATTGGCAACATCATGATCCCGTGGCTTTAGCCGACGCGTTAGGT
CAGGCGACGCAAATTTTGGTGGACGCTACGGATGCATCGCGGGGAGGGGC
TGTGGTGGAGCAGATTCCCTATGTCCCCAGCGATACTAGTGGCATTCCCG
ACTTTCCCAAGATAGTGCTGGGCTCGGCTGCTTGTCTGGCAGCTTACGCA
TGGGCCGCTTACGAGTTTGGTCAGCGAATTGTAACCCAGAGAGCATGCGA
GGTCTGTGGAGGCTCCGGTTTAGTGAGCAACACACGTTCGGGCACCGAGC
TGAAGCAACCGCGTAAGTGCTATGCTTGCGGTGGCTTCCTTCCCTGGGAA
AATTGGGGGAAATTTTGGCAGTCCAACATGGACGTGGGCAACGGGGGGGT
GTTGCAGCGTCCAGCCAGCGACTACGACGAGCTCAACAAGCGAATTGTAA
CCCAGAGAGCATGCGAGGTCTGTGGAGGCTCCGGTTTAGTGAGCAACACA
CGTTCGGGCACCGAGCTGAAGCAACCGCGTAAGTGCTATGCTTGCGGTGG
CTTCCTTCCCTGGGAAAATTGGGGGAAATTTTGGCAGTCCAACATGGACG
TGGGCAACGGGGGGGTGTTGCAGCGTCCAGCCAGCGACTACGACGAGCTC
AACAAGGTGGCTAGGGCAGCGAAGTGTCAGGGCTCAGGCAGCACGCCAGA
CGATCAACAGATACCGTGAGTGGCTAGGGCAGCGAAGTGTCAGGGCTCAG
GCAGCACGCCAGACGATCAACAGATACCGTGA
back to top