mRNA_H-paniculata_contig18129.4393.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18129.4393.1
Unique NamemRNA_H-paniculata_contig18129.4393.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: A0A6H5L3L8_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L8_9PHAE)

HSP 1 Score: 345 bits (885), Expect = 8.960e-115
Identity = 173/226 (76.55%), Postives = 186/226 (82.30%), Query Frame = 1
Query:   25 TPPGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYGVCCK---------------DVLCRTRHPGFFYASIHAFNRGGGDG-SLPRIFPGTGAADEAHSHVLNVPLGDQVHPPAFQAATTKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDCQSTVRGRVGH 654
            T  GAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYG   +               DVLCRT HPGF YASIHAFNRG G+  S  +IFPGTGA  EAH +VLN+PLGDQVHP  F +AT +V+ ALD F+PNLIL+SAGFDAHQADPS LGTLCARDFEVFTRRMVTAAERLC GR+VSVLEGGYALDCQ+TVR + GH
Sbjct:  217 TAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYGNVARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLNIPLGDQVHPAGFHSATARVVAALDKFKPNLILVSAGFDAHQADPSHLGTLCARDFEVFTRRMVTAAERLCAGRMVSVLEGGYALDCQATVRPK-GH 441          
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 343 bits (880), Expect = 1.890e-105
Identity = 170/211 (80.57%), Postives = 182/211 (86.26%), Query Frame = 1
Query:   25 TPPGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYGVCCKDVLCRTRHPGFFYASIHAFNRGGGDG-SLPRIFPGTGAADEAHSHVLNVPLGDQVHPPAFQAATTKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDCQSTVRGRVGH 654
            T  GAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYG CC      T HPGF YASIHAFNRG G+  S  +IFPGTGA  EAH +VLN+PLGDQVHP  F +AT +V+ AL+ F+PNLILLSAGFDAHQADPS LGTLCARDFEVFTRRMVTAAERLC GR+VSVLEGGYALDCQ+TVR + GH
Sbjct: 1659 TAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYGTCCAW----TEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLNLPLGDQVHPAGFHSATARVVAALEKFKPNLILLSAGFDAHQADPSHLGTLCARDFEVFTRRMVTAAERLCAGRMVSVLEGGYALDCQATVRPK-GH 1864          
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: A0A835YWT3_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWT3_9STRA)

HSP 1 Score: 196 bits (497), Expect = 5.680e-54
Identity = 104/226 (46.02%), Postives = 139/226 (61.50%), Query Frame = 1
Query:   25 TPPGAVLEAVDRVLHGE--AHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAH---------------HYGVCCKDVLCRTRHPGFFYASIHAFNRGGGDGSLPRIFPGTGAADEAHS--HVLNVPLGDQVHPPAFQAATTKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDCQSTVRGR 645
            T   AV++ VD VL G      AFCAVRPPGHHAG +LH M   SNGFCILN+ AL A+YAH               H+G   +D+L RT +P  FYAS+HA + G        +FP TG  ++ +   +VLN+P+   + P  F +A  +++ AL  F+P+LI++SAGFDAH  DP++LG L A DF   T+ +  AAE LCGGRL+SVLEGGYA++  +   GR
Sbjct: 1141 TAVAAVVQGVDAVLSGSDGVRYAFCAVRPPGHHAGADLHAMNVGSNGFCILNSAALGAMYAHYHKGLRRVCVVDIDVHHGNGTQDLLARTHNPLLFYASVHAHSVGDAKDGAGAVFPRTGGPNDKYGTGNVLNIPIAPPIQPADFHSAVAEMVQALRRFKPDLIVISAGFDAHLTDPNELGLLQAADFYDATKVLAGAAEELCGGRLISVLEGGYAVERSTLFGGR 1366          
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: A0A1E7EJK8_9STRA (Arginase/deacetylase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EJK8_9STRA)

HSP 1 Score: 174 bits (440), Expect = 3.350e-51
Identity = 99/216 (45.83%), Postives = 118/216 (54.63%), Query Frame = 1
Query:   34 GAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAH--------------------HYGVCCKDVLCRTRHPGFFYASIHAFNRGGGDGSLPRIFPGTGAADEAHSHVLNVPLGDQVHPPAFQAA-TTKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYAL 618
            GA L+ VD +++GE  NAFCA RPPGHHAG ELH M AVSNGFCILN VA AALYA                     H+G   +D+LC T  P F Y  I               FPG       H  VLN+PLG +V P A   A  TKV   +D F P LI++SAGFDAH+ DP  +G L A DF   T  +   A + C GR++SVLEGGY +
Sbjct:   10 GAALQGVDMIMNGECLNAFCATRPPGHHAGRELHAMKAVSNGFCILNTVACAALYATAPILQGGLGLSRVCIIDIDVHHGNGTQDILCSTYDPRFLYKGI---------------FPGRCGDISPHKGVLNIPLGGRVTPHALGTALVTKVTPTVDKFNPELIIISAGFDAHKNDPLNMGGLTAEDFGTLTEVVCKLAYKCCSGRVLSVLEGGYGV 210          
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: A0A8J2SBW9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SBW9_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.850e-48
Identity = 102/215 (47.44%), Postives = 132/215 (61.40%), Query Frame = 1
Query:   37 AVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHH---------------YGVCCKDVLCRTRHPGFFYASIHAFNRGGGDGSLPRIFPGTGA-ADEAHSHVLNVP-LGDQVHPPAF--QAATTKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDC 624
            AV++AVD VL GEA NA CAVRPPGHHAG  ++ +GA  NG+C+LN+ AL A +A H               +G   +D+L RT  P F Y S+HA            +FPG+G  A   H  VLN P   ++V    +  + A  ++L+ALD FRP+L++LS+GFDAH+ DP  LG L A D+ V TRR+V  AER C GRLVSVLEGGY +DC
Sbjct: 1375 AVIQAVDAVLSGEARNALCAVRPPGHHAGASINSLGAPGNGYCLLNHAALGAKHAAHERGLKRVAVFDFDVHHGNGTEDILARTFDPRFMYLSLHATGED--------VFPGSGRRARPDHPGVLNAPHRAEKVVTTEWVLEEALPRILNALDAFRPDLLILSSGFDAHKRDPVDLGRLDAADYGVLTRRLVDWAERKCCGRLVSVLEGGYGVDC 1581          
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: A0A448YZ95_9STRA (Hist_deacetyl domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZ95_9STRA)

HSP 1 Score: 175 bits (443), Expect = 9.890e-47
Identity = 102/237 (43.04%), Postives = 126/237 (53.16%), Query Frame = 1
Query:   34 GAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAH--------------------HYGVCCKDVLCRTRHPGFFYASIHA-------------------FNRGGGDGSLPRIFPGTGAADEAHSHVLNVPLGDQVHPPAFQAA-TTKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDC 624
            GA ++  D +++GE  N FCA RPPGHHAG ELH M AVSNGFCILN+ A AALYA                     H+G   +D+LC T  P F Y S HA                    + GGGD     IFPG       H  VLN+PLG +V P A   A  TKV  A++ F P LI++SAGFDAH+ DP  +G L A +F   T  +   A + C GR++SVLEGGY + C
Sbjct:  922 GAAIKGADMIMNGECLNVFCATRPPGHHAGRELHPMKAVSNGFCILNSAACAALYATAPISDGGLGLSRVCIIDIDVHHGNGTQDILCSTYDPRFLYVSTHAGGADINGVDMEDDDMDQFEHHLGGGD-EKKGIFPGRCGDYSPHKGVLNIPLGGRVTPHALGTALVTKVNPAVETFNPELIIISAGFDAHKNDPLNMGGLTAENFGTLTEVICKLAYKCCSGRVLSVLEGGYGVPC 1157          
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: F0Y5Z7_AURAN (Hist_deacetyl domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5Z7_AURAN)

HSP 1 Score: 173 bits (438), Expect = 4.840e-46
Identity = 103/221 (46.61%), Postives = 127/221 (57.47%), Query Frame = 1
Query:   19 SYTPPGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHH---------------YGVCCKDVLCRTRHPGFFYASIHAFNRGGGDGSLPRIFPGTGAADEA-HSHVLNVPLGDQVHPPA---FQAATTKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDC 624
            S     AVL+AVD V+ GEA NA CAVRPPGHHAG  ++ +GA SNG+CILN+ AL A YA H               +G   +DVL RT  P F Y S+HA  R         ++PG+G  +   H  VLN+P   +    A      A  KVL ALD FRP+L++LS+GFDAH+ DP  LG   A D+   TR  V  A R C GR+VSVLEGGY +DC
Sbjct: 1508 SLAASAAVLQAVDAVVSGEAKNALCAVRPPGHHAGASVNALGAESNGYCILNHAALGAKYAAHERGLQRVAVFDFDVHHGNGTEDVLARTCDPRFMYLSLHACGRD--------VYPGSGKREVPDHPGVLNLPHAYEEPMTAEWCHAYAMPKVLKALDGFRPDLLILSSGFDAHKRDPVDLGRFDASDYGDLTRACVDWARRNCCGRVVSVLEGGYGVDC 1720          
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: A0A7S2K2L8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2L8_9STRA)

HSP 1 Score: 172 bits (436), Expect = 8.530e-46
Identity = 101/239 (42.26%), Postives = 128/239 (53.56%), Query Frame = 1
Query:   25 TPPGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAH--------------------HYGVCCKDVLCRTRHPGFFYASIHA------------------FNRGGGDGSLPRIFPGTGAADEAHSHVLNVPLGDQVHPPAFQAAT-TKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDC 624
            T  GA ++AVD V+ G+  NAFCAVRPPGHHAG EL  M A+SNGFCILN+ A AA++A                     H+G   +D+LC T    F Y S+HA                  ++R    G+   IFPG       H  VLN+PLG +V       A  T+V  A++ F P+L++LSAGFDAH  DP  +G L A DF   T    T AER C GR+VS+LEGGY + C
Sbjct:  875 TGVGAAIQAVDMVVGGQCANAFCAVRPPGHHAGKELRAMNAISNGFCILNSAACAAIFAVTPVSEGGRGLKRVVVIDFDVHHGNGTQDILCSTHDSRFLYVSVHAGGAHLNGYEDSDDSDTDEYSRRSLGGNKDGIFPGKCGDTSPHPGVLNIPLGKKVTALGIGTALMTQVKPAVEEFAPDLMILSAGFDAHVNDPLGMGGLSAADFGTITEVACTIAERSCSGRVVSLLEGGYGVPC 1113          
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: A0A7S4IKT0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IKT0_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.210e-44
Identity = 98/233 (42.06%), Postives = 122/233 (52.36%), Query Frame = 1
Query:   37 AVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAH--------------------HYGVCCKDVLCRTRHPGFFYASIHA-------FNRGG---------GDGSLPRIFPGTGAADEAHSHVLNVPLGDQVHPPAF-QAATTKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDC 624
            A L+ VD ++ G+  N FCA+RPPGHHAG EL  M A+SNGFC+LN  A AALYA                     H+G   +D+LC T    F Y S+HA       ++  G         G G    IFPG       H  VLN+PLG +V   A   A  T+V  A+D F P LI+LSAGFDAH+ DP  +G L A DF   T      A + C GR++SVLEGGY + C
Sbjct:  130 AALQGVDMIVGGQCVNVFCAIRPPGHHAGRELRPMHAISNGFCLLNAAACAALYATAPQAEGGLGLKRVCIIDFDVHHGNGTQDILCSTHDSRFLYVSLHAGGAHINGYDDQGDAQDGHTVLGGGKNEGIFPGRCGDTSPHEGVLNIPLGSKVTAAAVGNALVTQVSPAVDKFCPELIVLSAGFDAHKHDPLGMGGLSAEDFGSVTEVACQMAFKTCSGRIISVLEGGYGVPC 362          
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: A0A7S1VI57_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VI57_9STRA)

HSP 1 Score: 163 bits (412), Expect = 7.570e-43
Identity = 99/242 (40.91%), Postives = 124/242 (51.24%), Query Frame = 1
Query:   37 AVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAH--------------------HYGVCCKDVLCRTRHPGFFYASIHA-------------------FNRGGGDGSLPRIFPGTGAADEAHSHVLNVPLGDQVHPPAFQAATTKVLD-ALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDCQSTVRG 642
            A L+A D V+ G   NA C  RPPGHHAG  +H M AVSNGFC+LN  A AA+YA                     H+G   +D+LC T  P FFY S+HA                   F+    DG    IFPG       H+ VLN+PLGD+V P    +A  K ++ A+  + P+LI+LSAGFDAH+ DP  LG L A  F   T      A R C GR++SVLEGGY + C    +G
Sbjct:  449 AALQAADLVVGGRCTNALCVTRPPGHHAGRVMHAMDAVSNGFCLLNPAACAAIYATMSSAEGGLGLKRVCIIDFDVHHGNGTQDILCNTFDPRFFYISLHAGGAQINGYETEDSENDFRSFSSKNQDG----IFPGRSGDVSPHAGVLNIPLGDKVTPHDVASALLKKIEPAVADYYPDLIILSAGFDAHKHDPLGLGGLDAEHFGSLTEVACNLARRCCNGRVISVLEGGYGIPCCRPQKG 686          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3L8_9PHAE8.960e-11576.55Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
D7G6J0_ECTSI1.890e-10580.57CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835YWT3_9STRA5.680e-5446.02AP2/ERF domain-containing protein n=1 Tax=Tribonem... [more]
A0A1E7EJK8_9STRA3.350e-5145.83Arginase/deacetylase (Fragment) n=1 Tax=Fragilario... [more]
A0A8J2SBW9_9STRA1.850e-4847.44Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A448YZ95_9STRA9.890e-4743.04Hist_deacetyl domain-containing protein n=1 Tax=Ps... [more]
F0Y5Z7_AURAN4.840e-4646.61Hist_deacetyl domain-containing protein n=1 Tax=Au... [more]
A0A7S2K2L8_9STRA8.530e-4642.26Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4IKT0_9STRA1.210e-4442.06Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1VI57_9STRA7.570e-4340.91Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18129contigH-paniculata_contig18129:154..3925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Taxonomic scopeEukaryota
Seed ortholog score345.5
Seed ortholog evalue1.8e-92
Seed eggNOG ortholog2880.D7G6J0
Exons5
Model size660
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18129.4393.1prot_H-paniculata_contig18129.4393.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18129 154..3925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929410.5132554-CDS-H-paniculata_contig18129:153..3241622929410.5132554-CDS-H-paniculata_contig18129:153..324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18129 154..324 -
1691480849.3853543-CDS-H-paniculata_contig18129:153..3241691480849.3853543-CDS-H-paniculata_contig18129:153..324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18129 154..324 -
1622929410.5277345-CDS-H-paniculata_contig18129:1146..12511622929410.5277345-CDS-H-paniculata_contig18129:1146..1251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18129 1147..1251 -
1691480849.3944364-CDS-H-paniculata_contig18129:1146..12511691480849.3944364-CDS-H-paniculata_contig18129:1146..1251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18129 1147..1251 -
1622929410.5444262-CDS-H-paniculata_contig18129:2288..24491622929410.5444262-CDS-H-paniculata_contig18129:2288..2449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18129 2289..2449 -
1691480849.403995-CDS-H-paniculata_contig18129:2288..24491691480849.403995-CDS-H-paniculata_contig18129:2288..2449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18129 2289..2449 -
1622929410.5567467-CDS-H-paniculata_contig18129:3536..35471622929410.5567467-CDS-H-paniculata_contig18129:3536..3547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18129 3537..3547 -
1691480849.4210591-CDS-H-paniculata_contig18129:3536..35471691480849.4210591-CDS-H-paniculata_contig18129:3536..3547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18129 3537..3547 -
1622929410.5682106-CDS-H-paniculata_contig18129:3713..39251622929410.5682106-CDS-H-paniculata_contig18129:3713..3925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18129 3714..3925 -
1691480849.4367301-CDS-H-paniculata_contig18129:3713..39251691480849.4367301-CDS-H-paniculata_contig18129:3713..3925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18129 3714..3925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18129.4393.1

>prot_H-paniculata_contig18129.4393.1 ID=prot_H-paniculata_contig18129.4393.1|Name=mRNA_H-paniculata_contig18129.4393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp
MLLIIHSYTPPGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAV
SNGFCILNNVALAALYAHHYGVCCKDVLCRTRHPGFFYASIHAFNRGGGD
GSLPRIFPGTGAADEAHSHVLNVPLGDQVHPPAFQAATTKVLDALDVFRP
NLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVL
EGGYALDCQSTVRGRVGHP*
back to top

mRNA from alignment at H-paniculata_contig18129:154..3925-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18129.4393.1 ID=mRNA_H-paniculata_contig18129.4393.1|Name=mRNA_H-paniculata_contig18129.4393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3772bp|location=Sequence derived from alignment at H-paniculata_contig18129:154..3925- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCTTATTATCCATTCATACACACCCCCAGGAGCGGTGCTGGAGGC CGTGGATCGAGTCCTACACGGCGAGGCGCACAACGCGTTCTGTGCTGTAC GACCTCCGGGACATCATGCCGGCGTGGAGCTGCACTGCATGGGAGCGGTC TCGAATGGATTCTGTATCCTTAACAATGTGGCGCTGGCGGCTCTCTACGC GCATCACTATGGGTAATTAGTTTTTGGTAATCTGCACACGTCTGATAGAA CGAAGACCTTATCACATTTCTTGTTCAGAAATATCTGTTCTATTGGGTTC TTTTGTTTTGAGAATATTTTTACACTATCACGTCGTCGATGTTTTGCTCT GACAATCCTTGTGGGAAAGTTGCTGTAGTGTTTGCTGTAGTCATTCTGGT GCAGATCTCATTAGCCACGCTTCGAAAGCATGGTTGGTGTGCTTTGAGCA GAGACGGTAGGGACATTAAATGTATATACATGTGTATATATATATATATA TATATATGAGAACACGATGCTCCCGGGAGATACTGGCTCTCGAGGGGGCA TCGCCTTCTCCATGCGGGTTGGTTCTAGGTCTTGAGATGTAGTGCGGAGC AGGCACTTGGGTTTTGTTCTGTCGGAGATGGAGTATGACCATCGAGGGTC GGACACAGCTAGAAAGCTGTTCCGAGAAAGGGAAAAAAATGCCATTGGTC GTTGTGTAGTAGTGGGCCGGGGTTCGTGAACCCCAGGAACGTCAGGAACG TGCTCTCCACATATATATGTATATAAATAAATATATATTTAATAATGAAC AGCATTATCGCGTTCACGTCTGATGAATGAGTCTGAACTGTCAGCTAATC CCTTCGGTTTGAGTATGGATGAAAAAAAAGAGTAAGGGATTTCGGAACAA AATCATTGAGAATGTGGAACGGTTCGAGGCAGCGATGATGAGCAGTGAGG AAGGAAATGGAAACAAGAGCAAGGGCGGGCGCGCGTTGTACCTGTTTTTC TGTTTTTCTGTTTTGTTGCAAGGCGTAGTGTCTTTTTCCAACGGGCCTCG TTGGTTTCTTGTTGAGTCAATATAATTTTCACGTTTTGGGTATACCAGGT ATATATGTATAAATATAAATATATCCATCAGTTGCTCACTTCTACGTTGT GCCATGTTTGCACAGTATACACGGTACTCAGTGATGTTTTTACACTACCT GGAAAAGTATTACAGTATCCCCACCCCCTGGCGCGCGCGCACTTGGCAAC GTAGGAAGAGCAGTTAGCCATCGGAGATCGTTCACTCTGATGGCGAGAAT GCTCCGCCCTCTGAAGAATTCGTGGTTAATTGTCTAGCAGCTGCGGCATG CAAAATATAAGGACTGCCCCCCCCCCCCCGTCAGTCAACCACCCACCCAC CTAACCATCCCTCATCCCAGGTGTATGGAGCGAGTTGCCGTCGTGGACTT CGACGTGCACCACGGAAATGGGACAGAGGATGTCTTGTGTCGGACGCGAC ACCCCGGCTTCTTTTACGCCTCCATCCACGCCTTTAACAGGGGCGGCGGT GACGGATCTCTGCCGCGGATCTTTCCGGGGACCGGTGCTGCGGACGAGGC GCACTCGCACGTTCTCAACGTGCCCTTGGGAGATCAGGTGGGGGGAAGGG TCCGTATCACAGTGCTTGACGGTGTTTCGACACGTATAGTAGTGTCAGTT GTTTGCATTGCGATAGGGAGGAGAGAGGAGAGAGGTACTCTTCTGTTTTC CATGACGCCATTGTTACATCATTGGTCACGTGTCCTCGCGAGGGAGGGGG GCACAATTGGAGTATGAGACGCTTGAGAATGGCGACACACATAGAGTACA GCTCTCCCCCATGAGCTGAATCTTATATTCTTGTGTGAGCCTGCACGTGA CACGAACCCTGTGCTGGCTATTCTTGTTTGAATAAATATTTCACCTCGCT GAAAAATACAAATAATTGGTGTATTCGCCACGAAAAAGAGAAAGTATTTC CCTGAGTTGCAGAATGAGCTCGTGTATTATATGTGCCCCAAACCATCCAC GACTGCTAATAATATTTATAAATCGAACGGGCAGAAATCGGTTCTTTATT CCATATGTTCGCTCATTCTCCAAATTCGACCAATACTTTTTAATTTTCGT TCCGAATACGCCAATTATTCGTATTGTAAGCGGGTGAAATATTTCAATGT TTCAATACCTTATGGAGAATAACATATATGCCGCAGAATGCTGGGAAAAT GTTCCGGAAGCAGACTTTTATCGACCTCGATATATCAACAGCAAAGCATA TGCGCGCTTGAAAAATTACGGCGATTGACGAACATACCTCGACGAGATAA TTCTTTTCAGCGGCACAACTGTCGGTGTCAGTAGCAACCGTTACGTAGTT TGCGAAAAAAATGGATCTGGAAAAATCTCCATCTTGGGGCGTGCATTATA TATGTATAGGCACTCCCAGGATAGATGCTGTGCAAGAAAATAGGGCAGTA CACCGTAATCTCGAGTGAGATGTGACGTGATGCTGGAACATGACATGGTG TGAGGGGATACAGGAGCATGGCATGATGATGTGATGTAACATGGGAGCAT GGCATGATGATTTGGCATGAAAGTGGAACACGACATGATCTGATTTCACA TGGCGCTGGAATATGGCATGGCAGGTGCACCCACCAGCGTTCCAGGCTGC GACGACGAAGGTGCTGGACGCTCTCGACGTGTTCAGGCCTAACCTCATCC TCTTGTCAGCGGGATTTGACGCTCACCAGGTATGTATCTGTTTACTGTAT CCGCCTCGGTATACTACAGTGGTACACGGAAGTAGAGTTTTGTGCACGCA GCACAGCAAAGCGCATCTCATGAGCGGTTGCACCCTGCTACTGTGCCGAG GAATCGTTCGGCACGAAACTGAGGCCACCTCTTTTCTTTTTTGAAAGCTT GGGGATGTGATTTTTTAACCTGTAAGAAATTCGGCGTACGATAGGGAAAT TGAGGTGAGATTTTGCCCCCCCTCGTCCCACACGTTCCGCTGCGACTTTG TTGGTTTTCCATCTCGTGTCATGTTTAACGTTTGCTGAGGACAATACGCT GGGTATATGGTCGCGAGTGAGTGAAGTGTAGGCTTGGCCCTTCAGTTGTC CGAAATTTGGTGTTTGCTGATGACTGACTGTATCTGGTGTATCTAGTCAA ACCACCCACGGACCTACGCCCGAACTGGTAGGGTAGCTCGTGAACTGAGC ATGACTGGAAGTCTAGTCAGAGGTCTTTTAGTGAGTGCAACCCCCCACCC ACGCTGCCTACTTGGTTCGGCCGAACCGGGGTGGCGCCTACCCCGCAGAG GAATAAATAACTCTGTTTTGTTAAAGGAAACGTAGAAATACTTTGGTAAA ATACTTGGAGTATGGAAGCATCGGTAAAGTATTTTGCCTCAGCCTTCCGG GGGTTAAAAAAAAAAAGTCTAGTCAACCACGGTCAGTTTGATCGGAGGAT ATGTAGGAGGCTACATAGCTTGAGAATGTACGTGTATATCGAAGGGGGGT GAATATTTGTGACAAAGGCACCCCCCTACACCTACATGTACGCGTACCCA GGCCGATCCGTCCCAACTGGGCACACTGTGCGCAAGAGACTTCGAGGTCT TCACGAGAAGGATGGTAACGGCTGCTGAGCGCCTGTGTGGAGGGCGTCTG GTGTCTGTCCTGGAGGGGGGGTACGCGTTGGACTGCCAGTCTACAGTGCG TGGTCGCGTGGGACACCCGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig18129:154..3925-

>mRNA_H-paniculata_contig18129.4393.1 ID=mRNA_H-paniculata_contig18129.4393.1|Name=mRNA_H-paniculata_contig18129.4393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig18129:154..3925- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCTTATTATCCATTCATACACACCCCCAGGAGCGGTGCTGGAGGC
CGTGGATCGAGTCCTACACGGCGAGGCGCACAACGCGTTCTGTGCTGTAC
GACCTCCGGGACATCATGCCGGCGTGGAGCTGCACTGCATGGGAGCGGTC
TCGAATGGATTCTGTATCCTTAACAATGTGGCGCTGGCGGCTCTCTACGC
GCATCACTATGGATGTTGCTTATTATCCATTCATACACACCCCCAGGAGC
GGTGCTGGAGGCCGTGGATCGAGTCCTACACGGCGAGGCGCACAACGCGT
TCTGTGCTGTACGACCTCCGGGACATCATGCCGGCGTGGAGCTGCACTGC
ATGGGAGCGGTCTCGAATGGATTCTGTATCCTTAACAATGTGGCGCTGGC
GGCTCTCTACGCGCATCACTATGGTGTTTGCTGTATGTTTGCTGTAAGGA
TGTCTTGTGTCGGACGCGACACCCCGGCTTCTTTTACGCCTCCATCCACG
CCTTTAACAGGGGCGGCGGTGACGGATCTCTGCCGCGGATCTTTCCGGGG
ACCGGTGCTGCGGACGAGGCGCACTCGCACGTTCTCAACGTGCCCTTGGG
AGATCAGAGGATGTCTTGTGTCGGACGCGACACCCCGGCTTCTTTTACGC
CTCCATCCACGCCTTTAACAGGGGCGGCGGTGACGGATCTCTGCCGCGGA
TCTTTCCGGGGACCGGTGCTGCGGACGAGGCGCACTCGCACGTTCTCAAC
GTGCCCTTGGGAGATCAGGTGCACCCACCAGCGTTCCAGGCTGCGACGAC
GAAGGTGCTGGACGCTCTCGACGTGTTCAGGCCTAACCTCATCCTCTTGT
CAGCGGGATTTGACGCTCACCAGGTGCACCCACCAGCGTTCCAGGCTGCG
ACGACGAAGGTGCTGGACGCTCTCGACGTGTTCAGGCCTAACCTCATCCT
CTTGTCAGCGGGATTTGACGCTCACCAGGCCGATCCGTCCCAACTGGGCA
CACTGTGCGCAAGAGACTTCGAGGTCTTCACGAGAAGGATGGTAACGGCT
GCTGAGCGCCTGTGTGGAGGGCGTCTGGTGTCTGTCCTGGAGGGGGGGTA
CGCGTTGGACTGCCAGTCTACAGTGCGTGGTCGCGTGGGACACCCGTAAG
CCGATCCGTCCCAACTGGGCACACTGTGCGCAAGAGACTTCGAGGTCTTC
ACGAGAAGGATGGTAACGGCTGCTGAGCGCCTGTGTGGAGGGCGTCTGGT
GTCTGTCCTGGAGGGGGGGTACGCGTTGGACTGCCAGTCTACAGTGCGTG
GTCGCGTGGGACACCCGTAA
back to top