mRNA_H-paniculata_contig18129.4393.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: A0A6H5L3L8_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L8_9PHAE) HSP 1 Score: 345 bits (885), Expect = 8.960e-115 Identity = 173/226 (76.55%), Postives = 186/226 (82.30%), Query Frame = 1
Query: 25 TPPGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYGVCCK---------------DVLCRTRHPGFFYASIHAFNRGGGDG-SLPRIFPGTGAADEAHSHVLNVPLGDQVHPPAFQAATTKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDCQSTVRGRVGH 654
T GAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYG + DVLCRT HPGF YASIHAFNRG G+ S +IFPGTGA EAH +VLN+PLGDQVHP F +AT +V+ ALD F+PNLIL+SAGFDAHQADPS LGTLCARDFEVFTRRMVTAAERLC GR+VSVLEGGYALDCQ+TVR + GH
Sbjct: 217 TAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYGNVARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLNIPLGDQVHPAGFHSATARVVAALDKFKPNLILVSAGFDAHQADPSHLGTLCARDFEVFTRRMVTAAERLCAGRMVSVLEGGYALDCQATVRPK-GH 441
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI) HSP 1 Score: 343 bits (880), Expect = 1.890e-105 Identity = 170/211 (80.57%), Postives = 182/211 (86.26%), Query Frame = 1
Query: 25 TPPGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYGVCCKDVLCRTRHPGFFYASIHAFNRGGGDG-SLPRIFPGTGAADEAHSHVLNVPLGDQVHPPAFQAATTKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDCQSTVRGRVGH 654
T GAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYG CC T HPGF YASIHAFNRG G+ S +IFPGTGA EAH +VLN+PLGDQVHP F +AT +V+ AL+ F+PNLILLSAGFDAHQADPS LGTLCARDFEVFTRRMVTAAERLC GR+VSVLEGGYALDCQ+TVR + GH
Sbjct: 1659 TAAGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHHYGTCCAW----TEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLNLPLGDQVHPAGFHSATARVVAALEKFKPNLILLSAGFDAHQADPSHLGTLCARDFEVFTRRMVTAAERLCAGRMVSVLEGGYALDCQATVRPK-GH 1864
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: A0A835YWT3_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWT3_9STRA) HSP 1 Score: 196 bits (497), Expect = 5.680e-54 Identity = 104/226 (46.02%), Postives = 139/226 (61.50%), Query Frame = 1
Query: 25 TPPGAVLEAVDRVLHGE--AHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAH---------------HYGVCCKDVLCRTRHPGFFYASIHAFNRGGGDGSLPRIFPGTGAADEAHS--HVLNVPLGDQVHPPAFQAATTKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDCQSTVRGR 645
T AV++ VD VL G AFCAVRPPGHHAG +LH M SNGFCILN+ AL A+YAH H+G +D+L RT +P FYAS+HA + G +FP TG ++ + +VLN+P+ + P F +A +++ AL F+P+LI++SAGFDAH DP++LG L A DF T+ + AAE LCGGRL+SVLEGGYA++ + GR
Sbjct: 1141 TAVAAVVQGVDAVLSGSDGVRYAFCAVRPPGHHAGADLHAMNVGSNGFCILNSAALGAMYAHYHKGLRRVCVVDIDVHHGNGTQDLLARTHNPLLFYASVHAHSVGDAKDGAGAVFPRTGGPNDKYGTGNVLNIPIAPPIQPADFHSAVAEMVQALRRFKPDLIVISAGFDAHLTDPNELGLLQAADFYDATKVLAGAAEELCGGRLISVLEGGYAVERSTLFGGR 1366
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: A0A1E7EJK8_9STRA (Arginase/deacetylase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EJK8_9STRA) HSP 1 Score: 174 bits (440), Expect = 3.350e-51 Identity = 99/216 (45.83%), Postives = 118/216 (54.63%), Query Frame = 1
Query: 34 GAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAH--------------------HYGVCCKDVLCRTRHPGFFYASIHAFNRGGGDGSLPRIFPGTGAADEAHSHVLNVPLGDQVHPPAFQAA-TTKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYAL 618
GA L+ VD +++GE NAFCA RPPGHHAG ELH M AVSNGFCILN VA AALYA H+G +D+LC T P F Y I FPG H VLN+PLG +V P A A TKV +D F P LI++SAGFDAH+ DP +G L A DF T + A + C GR++SVLEGGY +
Sbjct: 10 GAALQGVDMIMNGECLNAFCATRPPGHHAGRELHAMKAVSNGFCILNTVACAALYATAPILQGGLGLSRVCIIDIDVHHGNGTQDILCSTYDPRFLYKGI---------------FPGRCGDISPHKGVLNIPLGGRVTPHALGTALVTKVTPTVDKFNPELIIISAGFDAHKNDPLNMGGLTAEDFGTLTEVVCKLAYKCCSGRVLSVLEGGYGV 210
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: A0A8J2SBW9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SBW9_9STRA) HSP 1 Score: 180 bits (456), Expect = 1.850e-48 Identity = 102/215 (47.44%), Postives = 132/215 (61.40%), Query Frame = 1
Query: 37 AVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHH---------------YGVCCKDVLCRTRHPGFFYASIHAFNRGGGDGSLPRIFPGTGA-ADEAHSHVLNVP-LGDQVHPPAF--QAATTKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDC 624
AV++AVD VL GEA NA CAVRPPGHHAG ++ +GA NG+C+LN+ AL A +A H +G +D+L RT P F Y S+HA +FPG+G A H VLN P ++V + + A ++L+ALD FRP+L++LS+GFDAH+ DP LG L A D+ V TRR+V AER C GRLVSVLEGGY +DC
Sbjct: 1375 AVIQAVDAVLSGEARNALCAVRPPGHHAGASINSLGAPGNGYCLLNHAALGAKHAAHERGLKRVAVFDFDVHHGNGTEDILARTFDPRFMYLSLHATGED--------VFPGSGRRARPDHPGVLNAPHRAEKVVTTEWVLEEALPRILNALDAFRPDLLILSSGFDAHKRDPVDLGRLDAADYGVLTRRLVDWAERKCCGRLVSVLEGGYGVDC 1581
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: A0A448YZ95_9STRA (Hist_deacetyl domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZ95_9STRA) HSP 1 Score: 175 bits (443), Expect = 9.890e-47 Identity = 102/237 (43.04%), Postives = 126/237 (53.16%), Query Frame = 1
Query: 34 GAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAH--------------------HYGVCCKDVLCRTRHPGFFYASIHA-------------------FNRGGGDGSLPRIFPGTGAADEAHSHVLNVPLGDQVHPPAFQAA-TTKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDC 624
GA ++ D +++GE N FCA RPPGHHAG ELH M AVSNGFCILN+ A AALYA H+G +D+LC T P F Y S HA + GGGD IFPG H VLN+PLG +V P A A TKV A++ F P LI++SAGFDAH+ DP +G L A +F T + A + C GR++SVLEGGY + C
Sbjct: 922 GAAIKGADMIMNGECLNVFCATRPPGHHAGRELHPMKAVSNGFCILNSAACAALYATAPISDGGLGLSRVCIIDIDVHHGNGTQDILCSTYDPRFLYVSTHAGGADINGVDMEDDDMDQFEHHLGGGD-EKKGIFPGRCGDYSPHKGVLNIPLGGRVTPHALGTALVTKVNPAVETFNPELIIISAGFDAHKNDPLNMGGLTAENFGTLTEVICKLAYKCCSGRVLSVLEGGYGVPC 1157
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: F0Y5Z7_AURAN (Hist_deacetyl domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5Z7_AURAN) HSP 1 Score: 173 bits (438), Expect = 4.840e-46 Identity = 103/221 (46.61%), Postives = 127/221 (57.47%), Query Frame = 1
Query: 19 SYTPPGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAHH---------------YGVCCKDVLCRTRHPGFFYASIHAFNRGGGDGSLPRIFPGTGAADEA-HSHVLNVPLGDQVHPPA---FQAATTKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDC 624
S AVL+AVD V+ GEA NA CAVRPPGHHAG ++ +GA SNG+CILN+ AL A YA H +G +DVL RT P F Y S+HA R ++PG+G + H VLN+P + A A KVL ALD FRP+L++LS+GFDAH+ DP LG A D+ TR V A R C GR+VSVLEGGY +DC
Sbjct: 1508 SLAASAAVLQAVDAVVSGEAKNALCAVRPPGHHAGASVNALGAESNGYCILNHAALGAKYAAHERGLQRVAVFDFDVHHGNGTEDVLARTCDPRFMYLSLHACGRD--------VYPGSGKREVPDHPGVLNLPHAYEEPMTAEWCHAYAMPKVLKALDGFRPDLLILSSGFDAHKRDPVDLGRFDASDYGDLTRACVDWARRNCCGRVVSVLEGGYGVDC 1720
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: A0A7S2K2L8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K2L8_9STRA) HSP 1 Score: 172 bits (436), Expect = 8.530e-46 Identity = 101/239 (42.26%), Postives = 128/239 (53.56%), Query Frame = 1
Query: 25 TPPGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAH--------------------HYGVCCKDVLCRTRHPGFFYASIHA------------------FNRGGGDGSLPRIFPGTGAADEAHSHVLNVPLGDQVHPPAFQAAT-TKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDC 624
T GA ++AVD V+ G+ NAFCAVRPPGHHAG EL M A+SNGFCILN+ A AA++A H+G +D+LC T F Y S+HA ++R G+ IFPG H VLN+PLG +V A T+V A++ F P+L++LSAGFDAH DP +G L A DF T T AER C GR+VS+LEGGY + C
Sbjct: 875 TGVGAAIQAVDMVVGGQCANAFCAVRPPGHHAGKELRAMNAISNGFCILNSAACAAIFAVTPVSEGGRGLKRVVVIDFDVHHGNGTQDILCSTHDSRFLYVSVHAGGAHLNGYEDSDDSDTDEYSRRSLGGNKDGIFPGKCGDTSPHPGVLNIPLGKKVTALGIGTALMTQVKPAVEEFAPDLMILSAGFDAHVNDPLGMGGLSAADFGTITEVACTIAERSCSGRVVSLLEGGYGVPC 1113
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: A0A7S4IKT0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IKT0_9STRA) HSP 1 Score: 163 bits (413), Expect = 1.210e-44 Identity = 98/233 (42.06%), Postives = 122/233 (52.36%), Query Frame = 1
Query: 37 AVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAH--------------------HYGVCCKDVLCRTRHPGFFYASIHA-------FNRGG---------GDGSLPRIFPGTGAADEAHSHVLNVPLGDQVHPPAF-QAATTKVLDALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDC 624
A L+ VD ++ G+ N FCA+RPPGHHAG EL M A+SNGFC+LN A AALYA H+G +D+LC T F Y S+HA ++ G G G IFPG H VLN+PLG +V A A T+V A+D F P LI+LSAGFDAH+ DP +G L A DF T A + C GR++SVLEGGY + C
Sbjct: 130 AALQGVDMIVGGQCVNVFCAIRPPGHHAGRELRPMHAISNGFCLLNAAACAALYATAPQAEGGLGLKRVCIIDFDVHHGNGTQDILCSTHDSRFLYVSLHAGGAHINGYDDQGDAQDGHTVLGGGKNEGIFPGRCGDTSPHEGVLNIPLGSKVTAAAVGNALVTQVSPAVDKFCPELIVLSAGFDAHKHDPLGMGGLSAEDFGSVTEVACQMAFKTCSGRIISVLEGGYGVPC 362
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Match: A0A7S1VI57_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VI57_9STRA) HSP 1 Score: 163 bits (412), Expect = 7.570e-43 Identity = 99/242 (40.91%), Postives = 124/242 (51.24%), Query Frame = 1
Query: 37 AVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVSNGFCILNNVALAALYAH--------------------HYGVCCKDVLCRTRHPGFFYASIHA-------------------FNRGGGDGSLPRIFPGTGAADEAHSHVLNVPLGDQVHPPAFQAATTKVLD-ALDVFRPNLILLSAGFDAHQADPSQLGTLCARDFEVFTRRMVTAAERLCGGRLVSVLEGGYALDCQSTVRG 642
A L+A D V+ G NA C RPPGHHAG +H M AVSNGFC+LN A AA+YA H+G +D+LC T P FFY S+HA F+ DG IFPG H+ VLN+PLGD+V P +A K ++ A+ + P+LI+LSAGFDAH+ DP LG L A F T A R C GR++SVLEGGY + C +G
Sbjct: 449 AALQAADLVVGGRCTNALCVTRPPGHHAGRVMHAMDAVSNGFCLLNPAACAAIYATMSSAEGGLGLKRVCIIDFDVHHGNGTQDILCNTFDPRFFYISLHAGGAQINGYETEDSENDFRSFSSKNQDG----IFPGRSGDVSPHAGVLNIPLGDKVTPHDVASALLKKIEPAVADYYPDLIILSAGFDAHKHDPLGLGGLDAEHFGSLTEVACNLARRCCNGRVISVLEGGYGIPCCRPQKG 686 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18129.4393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18129.4393.1 >prot_H-paniculata_contig18129.4393.1 ID=prot_H-paniculata_contig18129.4393.1|Name=mRNA_H-paniculata_contig18129.4393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp MLLIIHSYTPPGAVLEAVDRVLHGEAHNAFCAVRPPGHHAGVELHCMGAVback to top mRNA from alignment at H-paniculata_contig18129:154..3925- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18129.4393.1 ID=mRNA_H-paniculata_contig18129.4393.1|Name=mRNA_H-paniculata_contig18129.4393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3772bp|location=Sequence derived from alignment at H-paniculata_contig18129:154..3925- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18129:154..3925- >mRNA_H-paniculata_contig18129.4393.1 ID=mRNA_H-paniculata_contig18129.4393.1|Name=mRNA_H-paniculata_contig18129.4393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig18129:154..3925- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |