prot_H-paniculata_contig18127.4392.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig18127.4392.1
Unique Nameprot_H-paniculata_contig18127.4392.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length123
Homology
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: A0A131XNF9_9ACAR (Putative polyprotein (Fragment) n=1 Tax=Hyalomma excavatum TaxID=257692 RepID=A0A131XNF9_9ACAR)

HSP 1 Score: 94.7 bits (234), Expect = 3.770e-20
Identity = 47/122 (38.52%), Postives = 74/122 (60.66%), Query Frame = 0
Query:    1 MSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFSHFSRDMPFVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISGRVKK 122
            +  +RT+ ++A E ++++  +DI AAYLN  + E +++  P  F  + +D   VCLL+KS YGL+QSGR WN TLD  +   G+ RS  +P +Y S+     K ++V V  DDL+I    +K
Sbjct:  909 LKSIRTLLAIAVERNWKIHQVDITAAYLNGTLKETVYMEQPQTFVEYEKDE--VCLLKKSLYGLRQSGREWNFTLDKLLKSEGMTRSKADPCVYISK-----KQLIVGVYVDDLLIIAEDEK 1023          
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: A0A0S7FQF2_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7FQF2_9TELE)

HSP 1 Score: 90.5 bits (223), Expect = 7.760e-20
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 0
Query:    1 MSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFSHFSRD-MPFVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISG 118
            M+ +R +  LAA++D EL  +D+  AYL+AP+  E+F+  P  F   +      VC L KS YGLKQSGRNWN  L DF++ I   ++  + Y  +S++   E+ IL+ +  DDLII+ 
Sbjct:    1 MTSVRVLMQLAAQYDLELHQMDVKTAYLHAPIDCEIFLEQPEGFEVVTETGEKLVCKLNKSLYGLKQSGRNWNKMLHDFLIEIDFVQNPAD-YCVYSKENEHERVILI-IWVDDLIIAA 117          
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: A0A7D9JQ57_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JQ57_PARCT)

HSP 1 Score: 90.1 bits (222), Expect = 8.970e-20
Identity = 45/119 (37.82%), Postives = 69/119 (57.98%), Query Frame = 0
Query:    1 MSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFSHFSRDMP-FVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISG 118
            MS +R +   A ++D  +  +D+  AYLNAP+  E+F+  P  +    ++    VC L KS YGLKQSGRNWNN L D+++     +S  +P +Y  R+ G  +  ++ +  DDLIIS 
Sbjct:   56 MSSIRILLQQAIQNDMLVHQMDVKTAYLNAPIDCEIFIEQPEGYERVGQNGERLVCKLNKSLYGLKQSGRNWNNMLHDYVMKESFTQSLADPCVYI-RNGGTNECTIIIIWVDDLIISA 173          
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: A0A6S7HC66_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HC66_PARCT)

HSP 1 Score: 90.5 bits (223), Expect = 1.830e-19
Identity = 45/119 (37.82%), Postives = 70/119 (58.82%), Query Frame = 0
Query:    1 MSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFS-HFSRDMPFVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISG 118
            MS +RT+     ++D  +  +D+  AYLNAP+  EL++  P  F  H       VC L+KS YGLKQSGRNWNN L +++   G  +S  +P +Y  R +  ++ ++V V  D++II+ 
Sbjct:   19 MSSIRTLLQRVVQNDMIIHQMDVKTAYLNAPIDCELYMEQPEGFEEHGENGEKLVCKLKKSLYGLKQSGRNWNNLLHEYLQKEGFTQSQADPCVYV-RMIDSKRCVIVIVWVDNIIIAA 136          
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: A0A6S7HTI9_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HTI9_PARCT)

HSP 1 Score: 91.7 bits (226), Expect = 4.510e-19
Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 0
Query:    1 MSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFS-HFSRDMPFVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISG 118
            MS +RT+     ++D  +  +D+  AYLNAP+  EL++  P  F  H       VC L KS YGLKQSGRNWNN L +++   G  +S  +P +Y  R +  ++ ++V V  DD+II+ 
Sbjct:  873 MSSIRTLLQRVVQNDMIIHQMDVKTAYLNAPIDCELYMEQPEGFEEHGENGEKLVCKLNKSLYGLKQSGRNWNNLLHEYLQKEGFTQSQADPCVYV-RMIDSKRCVIVIVWVDDIIIAA 990          
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: A0A6S7K9T5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K9T5_PARCT)

HSP 1 Score: 89.0 bits (219), Expect = 5.740e-19
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 0
Query:    1 MSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFS-HFSRDMPFVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISG 118
            MS +RT+     ++D  +  +D+  AYLNAP+  EL++  P  F  H       VC L KS YGLKQSGRNWNN L + +   G  +S  +P +Y  R +  ++ ++V V  DD+II+ 
Sbjct:    1 MSSIRTLLQRVMQNDMIIHQMDVKTAYLNAPIDCELYMEQPEGFEEHGENGEKLVCKLNKSLYGLKQSGRNWNNLLHENLQKEGFTQSQADPCVYV-RIIDSKRCVIVIVWVDDIIIAA 118          
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: A0A0S7FUV3_9TELE (COPIA n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7FUV3_9TELE)

HSP 1 Score: 90.5 bits (223), Expect = 7.230e-19
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 0
Query:    1 MSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFSHFSRD-MPFVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISG 118
            M+ +R +  LAA++D EL  +D+  AYL+AP+  E+F+  P  F   +      VC L KS YGLKQSGRNWN  L DF++ I   ++  + Y  +S++   E+ IL+ +  DDLII+ 
Sbjct:    1 MTSVRVLMQLAAQYDLELHQMDVKTAYLHAPIDCEIFLEQPEGFEVVTETGEKLVCKLNKSLYGLKQSGRNWNKMLHDFLIEIDFVQNPAD-YCVYSKENEHERVILI-IWVDDLIIAA 117          
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: A0A6B0V3E7_IXORI (Putative polyprotein (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A6B0V3E7_IXORI)

HSP 1 Score: 85.9 bits (211), Expect = 3.130e-18
Identity = 43/119 (36.13%), Postives = 71/119 (59.66%), Query Frame = 0
Query:    1 MSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFSHFSRDMPFVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISGR 119
            +  +RT+ ++A E ++++  +DI AAYLN  + E +++  P  FS   +D   VCLL+KS YGL+QS + WN TLD  +   G+ RS  +P +Y S+    E+ ++V V  D L++   
Sbjct:   61 LKSIRTLLAIAVERNWKIHQVDITAAYLNGTLKEAVYMEQPQPFSDCKKDE--VCLLKKSLYGLRQSAKEWNLTLDKLLKLQGMTRSKADPCVYVSK----ERRLIVGVYVDGLLVIAE 173          
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.720e-18
Identity = 44/120 (36.67%), Postives = 70/120 (58.33%), Query Frame = 0
Query:    1 MSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFSHFSRD-MPFVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISGR 119
            ++ +R + ++A   D EL+ +D+D AYL + + E+++V+ P  +     +    VC LRKS YGLKQSGRNW+  +D +  G G   S+ +P LY       E  ++V +  DDLII+G 
Sbjct:   64 ITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEMLVIV-LYVDDLIIAGN 182          
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Match: A0A7D9K6W0_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9K6W0_PARCT)

HSP 1 Score: 89.0 bits (219), Expect = 3.770e-18
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 0
Query:    1 MSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFS-HFSRDMPFVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVGEEKYILVAVCADDLIISG 118
            MS +R +     ++D  +  +D+  AYLNAP+  EL++  P  F  H       VC L KS YGLKQSGRNWNN L +++   G  +S  +P +Y  R +  ++ ++V V  DD+II+ 
Sbjct:  264 MSSIRALLQRVVQNDMIIHQMDVKTAYLNAPIDCELYMEQPEGFEEHGENGEKLVCKLNKSLYGLKQSGRNWNNLLHEYLQKEGFIQSQADPCVYV-RMIDSKRCVIVIVWVDDIIIAA 381          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18127.4392.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A131XNF9_9ACAR3.770e-2038.52Putative polyprotein (Fragment) n=1 Tax=Hyalomma e... [more]
A0A0S7FQF2_9TELE7.760e-2040.34POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A7D9JQ57_PARCT8.970e-2037.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HC66_PARCT1.830e-1937.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HTI9_PARCT4.510e-1938.66Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7K9T5_PARCT5.740e-1938.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0S7FUV3_9TELE7.230e-1940.34COPIA n=2 Tax=Poeciliopsis prolifica TaxID=188132 ... [more]
A0A6B0V3E7_IXORI3.130e-1836.13Putative polyprotein (Fragment) n=1 Tax=Ixodes ric... [more]
W7TII5_9STRA3.720e-1836.67Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A7D9K6W0_PARCT3.770e-1837.82Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..119
e-value: 3.5E-22
score: 79.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18127contigH-paniculata_contig18127:3950..4318 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18127.4392.1mRNA_H-paniculata_contig18127.4392.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig18127 3788..4318 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig18127.4392.1 ID=prot_H-paniculata_contig18127.4392.1|Name=mRNA_H-paniculata_contig18127.4392.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MSMLRTVFSLAAEHDFELEGLDIDAAYLNAPVIEELFVRLPSEFSHFSRD
MPFVCLLRKSQYGLKQSGRNWNNTLDDFIVGIGLDRSTTNPYLYFSRDVG
EEKYILVAVCADDLIISGRVKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2