mRNA_H-paniculata_contig1812.4387.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1812.4387.1
Unique NamemRNA_H-paniculata_contig1812.4387.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1812.4387.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 7.950e-73
Identity = 119/260 (45.77%), Postives = 161/260 (61.92%), Query Frame = 1
Query:    1 LQRWLKEMADTRVKRRITPSLSLMHRMNQVDAILDQAARNRITFRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRPDPSRDFDGKIGIWHICVIKSAQ-------------SNSAWRER--------------ELDVTIEVEWYQEWYKDSLVPALKEKMPWLEGEEMVAQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLV 699
            ++RW  ++   +   RI PSLS   + +++D I D+       +      +H+DE+WFYL+R++++V +  GE+  G   V H+SH+PK++ I A +RPDP+ DFDGKIGIW ICVI++AQ             + S WRE               E D TI+ EWY++WY D L+PA+KEKMPWL  + +V QQDGA+ HTGK  P  LN  G  RGW V+LVTQPAQSPDLN+ND+G FASLK RVW     +ID LV
Sbjct:  105 VRRWFSKLGAAKKAGRIKPSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_H-paniculata_contig1812.4387.1 vs. uniprot
Match: A0A448ZNT1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNT1_9STRA)

HSP 1 Score: 150 bits (380), Expect = 6.000e-38
Identity = 100/293 (34.13%), Postives = 154/293 (52.56%), Query Frame = 1
Query:   55 PSLSLMHRMNQVDAILDQAARNRITFRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRPDPSRD----FDGKIGIWHICVIKSAQSNSAWRERELDVT----IEVEWYQEWYKDSLVPALKEKMPWLEGE---EMVAQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKAPGGNDVQLQHTETKERQRRGSLPKSVKIDPEAFDA 900
            P L+  +++ +V+ IL+    N   F   F+ IHIDE WFYL R +   ++LPGE    ST  + K+H+ KV+F+CAT+RP    +    FDGKIGIW   V + A+ +S  R +   VT    ++ E Y+    + ++PA+ EK  W  G    E+  Q+D A  H    +  ++      +GWN+ + TQP  SPD+NV D+G F S++S  +++R   ID L+  V+  +D     TL  +  SL       L   G N+ +L H       R G+LP S+  DP+  +A
Sbjct:  235 PLLTAKNKLKRVEWILEHIDDNG-RFDDWFKWIHIDEKWFYLKRTKQTTYLLPGEAEPKSTS-KSKNHMTKVMFLCATARPRWDTNNCAWFDGKIGIWPFVVKEPAKRSSVNRPKGTLVTKPQNVDGEVYKRMLLEKVLPAIYEK--WPRGSSTPEIFIQEDNAKPHKAT-IREEVKAAAASKGWNITVKTQPPNSPDMNVLDLGFFNSIQSLQYKKRSKDIDHLIANVEEAFDECKRETLNNVFLSLQACMEASLGVDGDNNYKLPHMGKASLMREGTLPISIICDPDRINA 522          
BLAST of mRNA_H-paniculata_contig1812.4387.1 vs. uniprot
Match: A0A6A4Z9D8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9D8_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.110e-34
Identity = 96/303 (31.68%), Postives = 152/303 (50.17%), Query Frame = 1
Query:   46 RITPSLSLMH---RMNQVDAILDQAARNRITFRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRPD----PSRDFDGKIGIWHICVIKSAQSNSAWRERELDVT----IEVEWYQEWYKDSLVPALKEKMPWLEGEEMVAQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKAPGGNDVQLQHTETKERQRRGSLPKSVKIDPE---AFDAAVER 912
            R+ P L+  H   RM  V   L   A  +  +     T+HIDE WFY+ +Q  R ++   +E V + + + K HI KV+F+ A +RP       R +DG+IG+W     + A  +S  R+R  DVT    +  + Y+ +  D ++PA++ K P  +  ++  QQD A  H   + P  +   GR  GW + L +QPAQSPDLNV D+G F +++S   +    T+D LV  V   ++  +   L++   +L      + K  G ND +L H +     + G LP  ++ D +   A DA  ER
Sbjct:    7 RLKPMLTDKHKSDRMAFVQRHLRTGASGKRYWHDMLDTVHIDEKWFYVTKQNRRYYLW-SDEAVPTRKCRSKKHITKVMFLTAVARPRYDARNKRMWDGRIGMWPFVKTRPALRSSKNRKRGDDVTEPFTVTRDVYRSFLIDKVIPAVRSKWPSSKKNQIWIQQDNAKPHVSVNDPAVV-AAGRQGGWTISLCSQPAQSPDLNVLDLGYFNAIQSLQHQMATYTLDDLVVAVVKSFEELECTVLDKTFMTLQKVMECIFKMGGDNDFKLPHQKKHGLVKEGPLPTRLECDEDVCAAVDAMEER 307          
BLAST of mRNA_H-paniculata_contig1812.4387.1 vs. uniprot
Match: I6THG9_PSEMU (Tranposase n=1 Tax=Pseudo-nitzschia multiseries TaxID=37319 RepID=I6THG9_PSEMU)

HSP 1 Score: 140 bits (353), Expect = 2.550e-34
Identity = 89/262 (33.97%), Postives = 133/262 (50.76%), Query Frame = 1
Query:  130 FRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRP----DPSRDFDGKIGIWHICVIKSAQSNSAWRERELDVT-----IEVEWYQEWYKDSLVPALKEKMP--WLEGEEMVAQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKAPGGNDVQLQHTETKERQRRGSLPKSVKID 882
            F   + TIHIDE WFYL     + ++  GE    ST  + K  I KV+F+CA +RP    D +  FDGKIGIW   V + AQ NS  R R   VT     +    YQ+   + ++PA++EK P  W +   +  Q+D A  H  +     + E  R+ GWN+ + TQP  SPD NV D+G FAS+++  +++R   ID L+  V+          L  +  SL     + +K  G N  +L+H   ++  +  +LP S+  D
Sbjct:  226 FEDMYDTIHIDEKWFYLKTTNQKTYLCSGEPEPHST-CKSKRFIEKVMFLCAVARPRHDADRNAGFDGKIGIWPFVVKEPAQRNSVNRPRGTMVTKNIPSVNAAEYQKMMLEKVLPAIQEKFPVCW-KSRPIFIQEDNAKPHHLRSRAA-VREAAREAGWNITVTTQPPNSPDFNVLDLGFFASIQALQYKKRAKNIDQLIANVEEALVETSTIALNSIFLSLQCALEESIKVQGNNSYKLRHMGKEKLLKEDNLPVSITCD 484          
BLAST of mRNA_H-paniculata_contig1812.4387.1 vs. uniprot
Match: UPI002008F034 (uncharacterized protein LOC125206616 n=4 Tax=Salvia TaxID=21880 RepID=UPI002008F034)

HSP 1 Score: 136 bits (342), Expect = 4.640e-33
Identity = 93/306 (30.39%), Postives = 150/306 (49.02%), Query Frame = 1
Query:   10 WLKEMADTRVKRRITPSLSLMHRMNQV----DAILDQAARNRITFRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRP----DPSRDFDGKIGIWHICVIKSAQSNSAWREREL-------DVTIEVEWYQEWYKDSLVPALKEKMPWLEGEEMVAQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKAPGGNDVQLQHTETKERQRRGSLPKSVKID 882
            W+KE         I PSL+ ++++ +V      +  Q  + R+ ++S    +HIDE WFY+ +  DR ++LP E+    +  + K +I KV+F+CA SRP    D    +DGK+GI+    +  AQ  S  R R          VT EV   ++   + ++PA+K K P    +++  QQD AT H    M           G+ + L+ QPA SPD N+ D+G F +++S  + +   T+D LV  V S +      TL R+  SL     ++L   GGN  ++ H      QR   LP  ++++
Sbjct:  118 WVKEGKLRPHTNAIKPSLTNINKLARVRWSLSQLQPQITQGRVQYQSMHNVVHIDEKWFYMTKASDRYYLLPDEDEPYRS-CKSKRYITKVMFMCAVSRPHFGMDGQATYDGKVGIFPFTEVLPAQRKSKNRPRGTMETKAIHSVTKEV--MRDCLINKIIPAIKAKWPVWASKDIYIQQDNATPHITA-MDPDFQAAANSDGFKIQLICQPANSPDTNILDLGFFRAIQSLQYEKPCKTVDELVGNVCSSFAELSPQTLNRVFLSLQACLTEILLCRGGNGYKVPHINKDRLQRTVGLPNVLEVE 419          
BLAST of mRNA_H-paniculata_contig1812.4387.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.420e-32
Identity = 95/320 (29.69%), Postives = 156/320 (48.75%), Query Frame = 1
Query:    1 LQRWLKEMADTRVKRRITPSLSLMHRM---NQVDAILDQAARNRITFRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRPDPS----RDFDGKIGIWHICVIKSAQSNSAWRERELDVTIEVEW----YQEWYKDSLVPALKEKMPWLEGEEMVAQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKAPGGNDVQLQHTE------TKERQRRGSLPKSVKIDPEAFDAAVE 909
            L R +K     R   R+ P L+  HR+   N   + +    + R  +      +HIDE WFY I Q +R   L  +E     + Q K HI KV+F+CA +RP       + +DGK+G+W     + A+  S  R+R   VT+ +      Y+ +  D ++PA++ + P   G  +  QQD A  H   D P  L   GR  GWN+ L+ QPAQSPD NV D+G F +++S   +    TID L++ V+  ++      L++   +L     + +++ G N  +L H +      T+  + R S  + V +  E+ ++ +E
Sbjct:  117 LWRLVKAKKLNRRTSRLRPMLTPQHRVARYNFAKSFIRDGYQGRRQWHDMLDCVHIDEKWFY-ITQVNRRFYLWHDEPTPQRKAQSKRHITKVMFLCAVARPRHDSAHRKMWDGKVGLWPFVETQLAKRRSKNRDRGTPVTVPMTVTKPVYRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVDDPEVL-AAGRKEGWNIQLMAQPAQSPDFNVLDLGFFNAIQSLQHQTTARTIDDLIKCVEDAFENLAWRVLDKTFMTLQKVMEEAMRSSGDNVYKLPHLKKDMQFKTRVTELRPSCDEDVLLAIESMESRLE 434          
BLAST of mRNA_H-paniculata_contig1812.4387.1 vs. uniprot
Match: UPI000B8AB67D (uncharacterized protein LOC110800636 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AB67D)

HSP 1 Score: 134 bits (338), Expect = 5.990e-32
Identity = 89/293 (30.38%), Postives = 150/293 (51.19%), Query Frame = 1
Query:   49 ITPSLSLMHRMNQVDAILDQAARNRI----TFRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRPDPSRD----FDGKIGIWHICVIKSAQSNSAWRERELDVTIEVEWYQEWYK--------DSLVPALKEKMPWLEGEEMVAQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKAPGGNDVQLQHTETKERQRRGSLPKSVKI 879
            I PS++  H+  ++  IL +     +     F S +  IHIDE WFY+ R+  R ++L GEE       Q+ +++ KV+F+C  +RP    +    FDGK+GI+       A+ +S  RER    TIE++      K        D L+PA++ K PW   ++++ QQD +  H   +    L+   ++ G+N+ L+ QP QSPDLNV D+G F +++S   ++    ++ LV+ VK  Y+A+D   +      L     ++L   GGN+ +  H    +    G LP +V++
Sbjct:  234 IKPSVTAAHKTQRIQWILSKIIPRTVHSGPKFSSLYNVIHIDEKWFYMSRKTQRYYLLAGEEEPYRA-TQNSNYLVKVMFLCGIARPIIGYNGEVLFDGKLGIFPFTEEVPAKRSSKNRERG---TIEIKAITSVTKEVIRRKIIDELLPAIRSKWPWFASKDILIQQDNSRPHINPNDAEFLDAATQE-GFNIQLICQPPQSPDLNVLDLGFFRAIQSLQHQKFPRDVEALVKAVKEAYEAYDPKLINYTWLQLQYVMLEILGVKGGNNYKSPHKGKAKMDNLGLLPDTVEV 521          
BLAST of mRNA_H-paniculata_contig1812.4387.1 vs. uniprot
Match: UPI001C2701CF (uncharacterized protein LOC121760366 n=3 Tax=Salvia splendens TaxID=180675 RepID=UPI001C2701CF)

HSP 1 Score: 133 bits (334), Expect = 6.340e-32
Identity = 86/282 (30.50%), Postives = 139/282 (49.29%), Query Frame = 1
Query:  106 QAARNRITFRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRP----DPSRDFDGKIGIWHICVIKSAQSNSAWREREL-------DVTIEVEWYQEWYKDSLVPALKEKMPWLEGEEMVAQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKAPGGNDVQLQHTETKERQRRGSLPKSVKIDPEAFDAAVERWI 918
            Q  + R+ ++S    +HIDE WFY+ +  DR ++LP E+       + K  I KV+F+CA SRP    D    +DGK+GI+    +   Q  S  R R          VT EV   ++   + ++PA+K + P    +++  QQD AT H    M  +   +    G+ + L+ QPA SPD N+ D+G F +++S  + +   T+D LV  V S +      TL R+  SL     ++L+  GGN  ++ H      QR   LP  ++++ E     V +W+
Sbjct:  154 QITQGRVPYQSMHNVVHIDEKWFYMTKASDRYYLLPDEDEPYRA-CKSKRFITKVMFMCAVSRPHFGMDGQPTYDGKVGIFPFTEVMPTQRRSKNRPRGTMETKAVHSVTKEV--MRDCLINKIIPAIKARWPVWASKDIYIQQDNATPHITA-MDPEFQAVANSDGFRIQLICQPANSPDTNILDLGFFRAIQSLQYEKPCKTVDELVGNVCSYFAELSPQTLNRVFLSLQACLTEILRCRGGNGYKVPHINKDRLQRTVGLPNQLEVE-EGVVREVLQWL 430          
BLAST of mRNA_H-paniculata_contig1812.4387.1 vs. uniprot
Match: A0A485KDC6_9STRA (Aste57867_3131 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDC6_9STRA)

HSP 1 Score: 132 bits (333), Expect = 8.540e-32
Identity = 92/302 (30.46%), Postives = 149/302 (49.34%), Query Frame = 1
Query:   46 RITPSLSLMHRMNQVD---AILDQAARNRITFRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRP----DPSRDFDGKIGIWHICVIKSAQSNSAWRERELDVTIEV----EWYQEWYKDSLVPALKEKMPWLEGEEMVAQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKAPGGNDVQLQHTETKERQRRGSLPKSVKIDPEAFDAAVERWI 918
            R+ P ++  H+ ++V+   A +  +   ++ +      +HIDE WFYL     R ++   E+ V   +   K HI KV+F+ A +RP       R +DGKIG+W    +  AQ  S  RER   VT  V    + Y+E+  + ++P +K+  P      +  QQD A  H   D    +   G   GW++ LV QPA SPD NV D+G F S+++   RE    ID LV  V   +D  D + L++   +L     + LK  G N  +L H++  +  R G + + V  DP+   ++V+ ++
Sbjct:  132 RLKPMVTDKHKADRVEFVQAFVRPSTNGQMRWDDMLDRVHIDEKWFYLTLVNRRYYLWHDED-VPVRKCSSKRHIIKVMFLTAVARPRYDYTQRRMWDGKIGMWPFVSVVPAQRKSKNRERGTPVTTPVTVTKKVYREYLLEHVIPTIKKVWPGRRSHPIYIQQDNARPHVEVD-DAAVTLAGHSDGWSIQLVAQPAMSPDFNVLDLGFFNSIQALQHREVVTGIDDLVAAVHRAFDDLDWSVLDKTFMTLQRVMGEALKMGGDNAFKLPHSKKDKTARLGPVARVV-CDPDTKRSSVKMYL 430          
BLAST of mRNA_H-paniculata_contig1812.4387.1 vs. uniprot
Match: A0A0W8C4B7_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8C4B7_PHYNI)

HSP 1 Score: 129 bits (323), Expect = 3.880e-31
Identity = 92/326 (28.22%), Postives = 154/326 (47.24%), Query Frame = 1
Query:   37 VKRRITPSLSLMHRMNQVDAI------LDQAARNRITFRSDFQTIHIDEAWFYLIRQRDRVHILPGEERVGSTE-----VQHKSHIPKVIFICATSRPDPSRDFDGKIGIWHICVIKSAQSNSAWRE------RELDVTIEVEWYQEWYKDSLVPALKEKMPWLEGEEMVA--------QQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLNVNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFTRYNQVLKAPGGNDVQLQHTETKERQRRGSLPKSVKIDPEAFDAAVERWIDGNEERC 939
            ++R +T +  L+   ++ D +      + Q+   +  F   + T+H+DE WFY+ +   +V++L G++     +     VQ K HI KV+F+CA +RP    ++DGK+G+W +      Q  S  R+      R + +T EV  Y+    + ++PA+K K  W+  E +          QQD A  H   D P  L   G   GW++    QPAQSPDLNV D G F +++S        T + L+  V+  + +    TL +   S+      +++  GGN   L H +  +  R G LP S+  DP  + A + + +      C
Sbjct:   11 LRRSLTQTRPLLTEKHKTDRLKWCLLHVTQSTDRQPVFAPMYDTVHVDEKWFYVKKIGQKVYLLTGQDGTPCEDAPVQFVQSKRHILKVMFLCAVARP--RGNWDGKVGMWPVVEKYVTQRRSVNRDAGVEELRPISMTREV--YRRMLLEDVIPAIKAKWEWVRDEGLGVPLVSPIWVQQDNAKPHVLPDDPEVL-VAGCAGGWSILFRNQPAQSPDLNVLDCGFFNAIQSLQSVTVPRTAEDLISEVERAFASTTTTTLNKTFLSVQLIMQSIMRHNGGNAFGLSHIQKDKLLRAGELPDSLSCDPALYRATLAKVVPQRATTC 331          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1812.4387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE7.950e-7345.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A448ZNT1_9STRA6.000e-3834.13Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6A4Z9D8_9STRA1.110e-3431.68Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
I6THG9_PSEMU2.550e-3433.97Tranposase n=1 Tax=Pseudo-nitzschia multiseries Ta... [more]
UPI002008F0344.640e-3330.39uncharacterized protein LOC125206616 n=4 Tax=Salvi... [more]
A0A6A5AA16_9STRA1.420e-3229.69Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
UPI000B8AB67D5.990e-3230.38uncharacterized protein LOC110800636 n=1 Tax=Spina... [more]
UPI001C2701CF6.340e-3230.50uncharacterized protein LOC121760366 n=3 Tax=Salvi... [more]
A0A485KDC6_9STRA8.540e-3230.46Aste57867_3131 protein n=1 Tax=Aphanomyces stellat... [more]
A0A0W8C4B7_PHYNI3.880e-3128.22Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1812contigH-paniculata_contig1812:7470..8408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue4e-29
Seed eggNOG ortholog157072.XP_008866696.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size939
Cds size918
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929410.159307-CDS-H-paniculata_contig1812:7469..83871622929410.159307-CDS-H-paniculata_contig1812:7469..8387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1812 7470..8387 -
1691480849.289977-CDS-H-paniculata_contig1812:7469..83871691480849.289977-CDS-H-paniculata_contig1812:7469..8387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1812 7470..8387 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929410.1735933-UTR-H-paniculata_contig1812:8387..84081622929410.1735933-UTR-H-paniculata_contig1812:8387..8408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1812 8388..8408 -
1691480849.2995346-UTR-H-paniculata_contig1812:8387..84081691480849.2995346-UTR-H-paniculata_contig1812:8387..8408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1812 8388..8408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1812.4387.1prot_H-paniculata_contig1812.4387.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1812 7470..8387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1812.4387.1

>prot_H-paniculata_contig1812.4387.1 ID=prot_H-paniculata_contig1812.4387.1|Name=mRNA_H-paniculata_contig1812.4387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=306bp
MADTRVKRRITPSLSLMHRMNQVDAILDQAARNRITFRSDFQTIHIDEAW
FYLIRQRDRVHILPGEERVGSTEVQHKSHIPKVIFICATSRPDPSRDFDG
KIGIWHICVIKSAQSNSAWRERELDVTIEVEWYQEWYKDSLVPALKEKMP
WLEGEEMVAQQDGATLHTGKDMPRKLNELGRDRGWNVDLVTQPAQSPDLN
VNDMGVFASLKSRVWRERYGTIDGLVEGVKSMYDAFDAATLERMRQSLFT
RYNQVLKAPGGNDVQLQHTETKERQRRGSLPKSVKIDPEAFDAAVERWID
GNEERC
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mRNA from alignment at H-paniculata_contig1812:7470..8408-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1812.4387.1 ID=mRNA_H-paniculata_contig1812.4387.1|Name=mRNA_H-paniculata_contig1812.4387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=939bp|location=Sequence derived from alignment at H-paniculata_contig1812:7470..8408- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCAGCGATGGCTCAAAGAAATGGCCGACACGAGGGTGAAGCGGCGCAT TACCCCATCTCTGTCGTTGATGCACCGAATGAACCAGGTAGATGCTATCC TGGACCAAGCAGCAAGGAACCGCATCACTTTCAGGAGCGACTTCCAAACA ATTCACATCGACGAAGCGTGGTTTTACCTAATTCGCCAAAGGGATCGCGT CCATATACTCCCCGGGGAGGAAAGGGTGGGGTCCACCGAAGTACAGCACA AGAGTCACATCCCCAAGGTAATCTTCATCTGCGCCACTTCACGTCCAGAC CCTTCTCGCGATTTCGACGGTAAGATTGGAATCTGGCATATTTGCGTCAT CAAGTCGGCGCAAAGTAATTCGGCCTGGCGTGAACGGGAGCTCGACGTGA CCATTGAGGTCGAGTGGTACCAGGAGTGGTACAAGGACTCTCTTGTCCCA GCATTGAAGGAAAAGATGCCGTGGTTGGAGGGTGAGGAAATGGTCGCGCA GCAGGACGGAGCGACCCTCCATACGGGGAAAGACATGCCGCGGAAGCTCA ACGAACTCGGGAGGGACCGGGGGTGGAACGTCGATCTCGTAACTCAGCCC GCGCAATCACCAGATCTCAACGTAAACGATATGGGGGTTTTTGCATCTCT GAAAAGTAGGGTTTGGAGGGAGCGTTACGGTACGATAGACGGCCTTGTAG AGGGGGTAAAGAGCATGTACGATGCGTTCGACGCGGCAACCTTAGAGAGG ATGCGGCAGAGCCTCTTTACGCGGTACAATCAGGTCTTGAAGGCGCCAGG AGGTAACGATGTCCAGTTACAGCACACCGAAACCAAGGAAAGACAGCGAC GGGGAAGTCTGCCAAAATCGGTCAAAATCGACCCAGAGGCATTCGACGCG GCGGTAGAACGATGGATTGATGGGAACGAGGAACGCTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1812:7470..8408-

>mRNA_H-paniculata_contig1812.4387.1 ID=mRNA_H-paniculata_contig1812.4387.1|Name=mRNA_H-paniculata_contig1812.4387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1836bp|location=Sequence derived from alignment at H-paniculata_contig1812:7470..8408- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGACACGAGGGTGAAGCGGCGCATTACCCCATCTCTGTCGTTGAT
GCACCGAATGAACCAGGTAGATGCTATCCTGGACCAAGCAGCAAGGAACC
GCATCACTTTCAGGAGCGACTTCCAAACAATTCACATCGACGAAGCGTGG
TTTTACCTAATTCGCCAAAGGGATCGCGTCCATATACTCCCCGGGGAGGA
AAGGGTGGGGTCCACCGAAGTACAGCACAAGAGTCACATCCCCAAGGTAA
TCTTCATCTGCGCCACTTCACGTCCAGACCCTTCTCGCGATTTCGACGGT
AAGATTGGAATCTGGCATATTTGCGTCATCAAGTCGGCGCAAAGTAATTC
GGCCTGGCGTGAACGGGAGCTCGACGTGACCATTGAGGTCGAGTGGTACC
AGGAGTGGTACAAGGACTCTCTTGTCCCAGCATTGAAGGAAAAGATGCCG
TGGTTGGAGGGTGAGGAAATGGTCGCGCAGCAGGACGGAGCGACCCTCCA
TACGGGGAAAGACATGCCGCGGAAGCTCAACGAACTCGGGAGGGACCGGG
GGTGGAACGTCGATCTCGTAACTCAGCCCGCGCAATCACCAGATCTCAAC
GTAAACGATATGGGGGTTTTTGCATCTCTGAAAAGTAGGGTTTGGAGGGA
GCGTTACGGTACGATAGACGGCCTTGTAGAGGGGGTAAAGAGCATGTACG
ATGCGTTCGACGCGGCAACCTTAGAGAGGATGCGGCAGAGCCTCTTTACG
CGGTACAATCAGGTCTTGAAGGCGCCAGGAGGTAACGATGTCCAGTTACA
GCACACCGAAACCAAGGAAAGACAGCGACGGGGAAGTCTGCCAAAATCGG
TCAAAATCGACCCAGAGGCATTCGACGCGGCGGTAGAACGATGGATTGAT
GGGAACGAGGAACGCTGCATGGCCGACACGAGGGTGAAGCGGCGCATTAC
CCCATCTCTGTCGTTGATGCACCGAATGAACCAGGTAGATGCTATCCTGG
ACCAAGCAGCAAGGAACCGCATCACTTTCAGGAGCGACTTCCAAACAATT
CACATCGACGAAGCGTGGTTTTACCTAATTCGCCAAAGGGATCGCGTCCA
TATACTCCCCGGGGAGGAAAGGGTGGGGTCCACCGAAGTACAGCACAAGA
GTCACATCCCCAAGGTAATCTTCATCTGCGCCACTTCACGTCCAGACCCT
TCTCGCGATTTCGACGGTAAGATTGGAATCTGGCATATTTGCGTCATCAA
GTCGGCGCAAAGTAATTCGGCCTGGCGTGAACGGGAGCTCGACGTGACCA
TTGAGGTCGAGTGGTACCAGGAGTGGTACAAGGACTCTCTTGTCCCAGCA
TTGAAGGAAAAGATGCCGTGGTTGGAGGGTGAGGAAATGGTCGCGCAGCA
GGACGGAGCGACCCTCCATACGGGGAAAGACATGCCGCGGAAGCTCAACG
AACTCGGGAGGGACCGGGGGTGGAACGTCGATCTCGTAACTCAGCCCGCG
CAATCACCAGATCTCAACGTAAACGATATGGGGGTTTTTGCATCTCTGAA
AAGTAGGGTTTGGAGGGAGCGTTACGGTACGATAGACGGCCTTGTAGAGG
GGGTAAAGAGCATGTACGATGCGTTCGACGCGGCAACCTTAGAGAGGATG
CGGCAGAGCCTCTTTACGCGGTACAATCAGGTCTTGAAGGCGCCAGGAGG
TAACGATGTCCAGTTACAGCACACCGAAACCAAGGAAAGACAGCGACGGG
GAAGTCTGCCAAAATCGGTCAAAATCGACCCAGAGGCATTCGACGCGGCG
GTAGAACGATGGATTGATGGGAACGAGGAACGCTGC
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