mRNA_H-paniculata_contig18100.4381.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18100.4381.1
Unique NamemRNA_H-paniculata_contig18100.4381.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18100.4381.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 85.5 bits (210), Expect = 1.020e-16
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 1
Query:   13 QYGVAVSGGAELMGLRAEAHHQLGHWPIALDFINAFNPVKRAAILEEVEIRTPGLTPFVGNCYREKPAHIIFQMDTSERWKISSNTGIHQGDRLEPALFCIPVGPIWHKYREQFEALGVELSAYLDDQVLI 405
            QYGVAV GG EL+  RA   HQ G   +A D  NAFN +KR+AIL  +    P + P+  N Y  +P  ++++ D+     I S TG+ QG  L P  +   +  +   +R     +G +L A++DD V++
Sbjct: 1265 QYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSGMA-VIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVL 1394          
BLAST of mRNA_H-paniculata_contig18100.4381.1 vs. uniprot
Match: A0A2U1QGS1_ARTAN (Reverse transcriptase domain-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QGS1_ARTAN)

HSP 1 Score: 72.0 bits (175), Expect = 2.760e-12
Identity = 56/142 (39.44%), Postives = 79/142 (55.63%), Query Frame = 1
Query:    1 LSERQYGVAVSGGAELM------GLRAEAHHQLGHWPIALDFINAFNPVKRAAILEEVEIRTPGLTPFVGNCYREKPAHIIFQMDTSERWKISSNTGIHQGDRLEPALFCIPVGPIWHKYREQFEALGVELSA-YLDDQVLI 405
            LS+ Q+GV VSGGAE +      GL +E H+      + +DF NAFN V R+A+L EV +R P ++ +V   Y +  A  ++  DT     I S TG+ QGD L P LF + +  + HK R+  + L   L A YLDD  +I
Sbjct:   12 LSDFQFGVGVSGGAEAVLHSVNRGL-SEYHNDGSFAMLTVDFSNAFNLVDRSALLYEVRVRCPSISLWVDFLYGQ--AARLYIGDTH----IWSATGVQQGDPLGPLLFALVLHRLVHKIRDSCKLL---LHAWYLDDGTVI 143          
BLAST of mRNA_H-paniculata_contig18100.4381.1 vs. uniprot
Match: A0A6L2L3L9_TANCI (Putative reverse transcriptase domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2L3L9_TANCI)

HSP 1 Score: 68.2 bits (165), Expect = 1.110e-10
Identity = 50/140 (35.71%), Postives = 76/140 (54.29%), Query Frame = 1
Query:    1 LSERQYGVAVSGGAELM-----GLRAEAHHQLGHWPIALDFINAFNPVKRAAILEEVEIRTPGLTPFVGNCYREKPAHIIFQMDTSERWKISSNTGIHQGDRLEPALFCIPVGPIWHKYREQFEALGVELSAYLDDQVLI 405
            LS+ Q+GV VSGGAE +      + +E H+      + +DF NAFN V R+A+L EV ++ P ++ +V   Y +  A  ++  DT     I S TG+ QGD L P LF + +    HK ++  + L  +   YLDD  +I
Sbjct:  392 LSDFQFGVRVSGGAEAILHSVNRVLSEYHNDGSLAMLIMDFSNAFNLVDRSALLHEVRVKCPSISLWVDLLYGQ--ASRLYIGDTH----IWSATGVQQGDPLRPLLFALILHLQLHKIKDSCKLLLHDW--YLDDGTII 523          
BLAST of mRNA_H-paniculata_contig18100.4381.1 vs. uniprot
Match: A0A812UV62_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812UV62_9DINO)

HSP 1 Score: 61.6 bits (148), Expect = 2.190e-8
Identity = 50/139 (35.97%), Postives = 72/139 (51.80%), Query Frame = 1
Query:    1 LSERQYGVAVSGGAE--LMGLRAEAHHQLGHW---PIALDFINAFNPVKRAAILEEVEIRTPGLTPFVGNCYREKPAHIIFQMDTSERWKISSNTGIHQGDRLEPALFCIPVGPIWHKYREQFEALGVELSAYLDDQVL 402
            L+  Q GVAV  G E  +  +R  AH   GH     + +DF NAFN V RAA+L +V +  PGL+P+    Y E+ + ++F  D      +SS  G+ QGD L P LF + + P     R       + ++A+LDD  L
Sbjct:  724 LTPLQVGVAVPLGCEAAVHTVRHWAHCNSGHTCKVVLKVDFRNAFNTVDRAALLRQVRLHMPGLSPWAEWTY-ERHSRLLFG-DAC----LSSEAGVQQGDPLGPLLFSLALQPALKAARSGPTPPEL-VTAFLDDVCL 855          
BLAST of mRNA_H-paniculata_contig18100.4381.1 vs. uniprot
Match: A0A699HZ53_TANCI (Putative reverse transcriptase domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699HZ53_TANCI)

HSP 1 Score: 59.7 bits (143), Expect = 9.790e-8
Identity = 49/141 (34.75%), Postives = 73/141 (51.77%), Query Frame = 1
Query:    1 LSERQYGVAVSGGAELM-----GLRAEAHHQLGHWPIALDFINAFNPVKRAAILEEVEIRTPGLTPFVGNCYREKPAHIIFQMDTSERWKISSNTGIHQGDRLEPALFCIPVGPIWHKYREQFEALGVELSA-YLDDQVLI 405
            LS+ Q+GV VSGGAE +      + +E H+      + +D  NAFN V R+A+L EV  + P ++ +V   Y +  A  ++  DT     I S T + Q D L P  F + + P  HK ++    L   L A YLDD+ +I
Sbjct:  260 LSDFQFGVGVSGGAEAILHSVNRVLSEYHNDGSLAMLIVDCSNAFNLVDRSALLHEVSAKCPSISLWVDFLYGK--ASRLYIGDTH----IWSATEVQQCDPLGPLFFALILHPFLHKIKDSCMLL---LHAWYLDDETVI 391          
BLAST of mRNA_H-paniculata_contig18100.4381.1 vs. uniprot
Match: A0A391NU24_9EUKA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Kipferlia bialata TaxID=797122 RepID=A0A391NU24_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 3.330e-5
Identity = 32/97 (32.99%), Postives = 49/97 (50.52%), Query Frame = 1
Query:  103 DFINAFNPVKRAAILEEVEIRTPGLTPFVGNCYREKPAHIIFQMDTSERWKISSNTGIHQGDRLEPALFCIPVGPIWHKYREQFEALGVELSAYLDD 393
            DF NAFN V+R A+L   +   P L+ +  + Y    A ++++ +      I S  G+ QGD L P  F + V PI  +  + F   GV++  Y DD
Sbjct:    1 DFQNAFNAVRRDALLIAAKRTMPCLSAYYESAYERGDAALMWRDEC-----IESAEGVRQGDPLSPTAFALTVHPIMVRANKMFS--GVDVVLYHDD 90          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18100.4381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN1.020e-1635.88Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A2U1QGS1_ARTAN2.760e-1239.44Reverse transcriptase domain-containing protein n=... [more]
A0A6L2L3L9_TANCI1.110e-1035.71Putative reverse transcriptase domain-containing p... [more]
A0A812UV62_9DINO2.190e-835.97Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A699HZ53_TANCI9.790e-834.75Putative reverse transcriptase domain-containing p... [more]
A0A391NU24_9EUKA3.330e-532.99Reverse transcriptase domain-containing protein (F... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18100contigH-paniculata_contig18100:4486..4890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929409.5789177-CDS-H-paniculata_contig18100:4485..48901622929409.5789177-CDS-H-paniculata_contig18100:4485..4890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18100 4486..4890 +
1691480849.0828817-CDS-H-paniculata_contig18100:4485..48901691480849.0828817-CDS-H-paniculata_contig18100:4485..4890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18100 4486..4890 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18100.4381.1prot_H-paniculata_contig18100.4381.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18100 4486..4890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18100.4381.1

>prot_H-paniculata_contig18100.4381.1 ID=prot_H-paniculata_contig18100.4381.1|Name=mRNA_H-paniculata_contig18100.4381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
LSERQYGVAVSGGAELMGLRAEAHHQLGHWPIALDFINAFNPVKRAAILE
EVEIRTPGLTPFVGNCYREKPAHIIFQMDTSERWKISSNTGIHQGDRLEP
ALFCIPVGPIWHKYREQFEALGVELSAYLDDQVLI
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mRNA from alignment at H-paniculata_contig18100:4486..4890+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18100.4381.1 ID=mRNA_H-paniculata_contig18100.4381.1|Name=mRNA_H-paniculata_contig18100.4381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at H-paniculata_contig18100:4486..4890+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTCGGAGCGGCAATACGGGGTAGCAGTTTCGGGTGGCGCGGAGCTCAT GGGCCTCCGCGCGGAAGCACACCACCAATTGGGGCATTGGCCCATCGCCC TCGACTTTATCAATGCATTCAACCCCGTCAAGCGGGCGGCGATCTTGGAA GAAGTGGAAATCCGCACCCCAGGACTGACACCTTTCGTAGGAAATTGCTA TCGGGAGAAGCCGGCACATATTATTTTCCAGATGGACACCAGTGAACGCT GGAAAATCTCTTCGAACACAGGGATCCACCAGGGCGACCGACTGGAACCC GCCCTCTTCTGCATACCCGTGGGACCGATCTGGCACAAGTATCGAGAACA ATTCGAGGCTCTGGGGGTAGAGCTATCGGCCTACCTCGACGATCAGGTGC TGATA
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Coding sequence (CDS) from alignment at H-paniculata_contig18100:4486..4890+

>mRNA_H-paniculata_contig18100.4381.1 ID=mRNA_H-paniculata_contig18100.4381.1|Name=mRNA_H-paniculata_contig18100.4381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig18100:4486..4890+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTCGGAGCGGCAATACGGGGTAGCAGTTTCGGGTGGCGCGGAGCTCAT
GGGCCTCCGCGCGGAAGCACACCACCAATTGGGGCATTGGCCCATCGCCC
TCGACTTTATCAATGCATTCAACCCCGTCAAGCGGGCGGCGATCTTGGAA
GAAGTGGAAATCCGCACCCCAGGACTGACACCTTTCGTAGGAAATTGCTA
TCGGGAGAAGCCGGCACATATTATTTTCCAGATGGACACCAGTGAACGCT
GGAAAATCTCTTCGAACACAGGGATCCACCAGGGCGACCGACTGGAACCC
GCCCTCTTCTGCATACCCGTGGGACCGATCTGGCACAAGTATCGAGAACA
ATTCGAGGCTCTGGGGGTAGAGCTATCGGCCTACCTCGACGATCAGGTGC
TGATATTGTCGGAGCGGCAATACGGGGTAGCAGTTTCGGGTGGCGCGGAG
CTCATGGGCCTCCGCGCGGAAGCACACCACCAATTGGGGCATTGGCCCAT
CGCCCTCGACTTTATCAATGCATTCAACCCCGTCAAGCGGGCGGCGATCT
TGGAAGAAGTGGAAATCCGCACCCCAGGACTGACACCTTTCGTAGGAAAT
TGCTATCGGGAGAAGCCGGCACATATTATTTTCCAGATGGACACCAGTGA
ACGCTGGAAAATCTCTTCGAACACAGGGATCCACCAGGGCGACCGACTGG
AACCCGCCCTCTTCTGCATACCCGTGGGACCGATCTGGCACAAGTATCGA
GAACAATTCGAGGCTCTGGGGGTAGAGCTATCGGCCTACCTCGACGATCA
GGTGCTGATA
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