mRNA_H-paniculata_contig18100.4381.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18100.4381.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 85.5 bits (210), Expect = 1.020e-16 Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 1
Query: 13 QYGVAVSGGAELMGLRAEAHHQLGHWPIALDFINAFNPVKRAAILEEVEIRTPGLTPFVGNCYREKPAHIIFQMDTSERWKISSNTGIHQGDRLEPALFCIPVGPIWHKYREQFEALGVELSAYLDDQVLI 405
QYGVAV GG EL+ RA HQ G +A D NAFN +KR+AIL + P + P+ N Y +P ++++ D+ I S TG+ QG L P + + + +R +G +L A++DD V++
Sbjct: 1265 QYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSGMA-VIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVL 1394
BLAST of mRNA_H-paniculata_contig18100.4381.1 vs. uniprot
Match: A0A2U1QGS1_ARTAN (Reverse transcriptase domain-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QGS1_ARTAN) HSP 1 Score: 72.0 bits (175), Expect = 2.760e-12 Identity = 56/142 (39.44%), Postives = 79/142 (55.63%), Query Frame = 1
Query: 1 LSERQYGVAVSGGAELM------GLRAEAHHQLGHWPIALDFINAFNPVKRAAILEEVEIRTPGLTPFVGNCYREKPAHIIFQMDTSERWKISSNTGIHQGDRLEPALFCIPVGPIWHKYREQFEALGVELSA-YLDDQVLI 405
LS+ Q+GV VSGGAE + GL +E H+ + +DF NAFN V R+A+L EV +R P ++ +V Y + A ++ DT I S TG+ QGD L P LF + + + HK R+ + L L A YLDD +I
Sbjct: 12 LSDFQFGVGVSGGAEAVLHSVNRGL-SEYHNDGSFAMLTVDFSNAFNLVDRSALLYEVRVRCPSISLWVDFLYGQ--AARLYIGDTH----IWSATGVQQGDPLGPLLFALVLHRLVHKIRDSCKLL---LHAWYLDDGTVI 143
BLAST of mRNA_H-paniculata_contig18100.4381.1 vs. uniprot
Match: A0A6L2L3L9_TANCI (Putative reverse transcriptase domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2L3L9_TANCI) HSP 1 Score: 68.2 bits (165), Expect = 1.110e-10 Identity = 50/140 (35.71%), Postives = 76/140 (54.29%), Query Frame = 1
Query: 1 LSERQYGVAVSGGAELM-----GLRAEAHHQLGHWPIALDFINAFNPVKRAAILEEVEIRTPGLTPFVGNCYREKPAHIIFQMDTSERWKISSNTGIHQGDRLEPALFCIPVGPIWHKYREQFEALGVELSAYLDDQVLI 405
LS+ Q+GV VSGGAE + + +E H+ + +DF NAFN V R+A+L EV ++ P ++ +V Y + A ++ DT I S TG+ QGD L P LF + + HK ++ + L + YLDD +I
Sbjct: 392 LSDFQFGVRVSGGAEAILHSVNRVLSEYHNDGSLAMLIMDFSNAFNLVDRSALLHEVRVKCPSISLWVDLLYGQ--ASRLYIGDTH----IWSATGVQQGDPLRPLLFALILHLQLHKIKDSCKLLLHDW--YLDDGTII 523
BLAST of mRNA_H-paniculata_contig18100.4381.1 vs. uniprot
Match: A0A812UV62_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812UV62_9DINO) HSP 1 Score: 61.6 bits (148), Expect = 2.190e-8 Identity = 50/139 (35.97%), Postives = 72/139 (51.80%), Query Frame = 1
Query: 1 LSERQYGVAVSGGAE--LMGLRAEAHHQLGHW---PIALDFINAFNPVKRAAILEEVEIRTPGLTPFVGNCYREKPAHIIFQMDTSERWKISSNTGIHQGDRLEPALFCIPVGPIWHKYREQFEALGVELSAYLDDQVL 402
L+ Q GVAV G E + +R AH GH + +DF NAFN V RAA+L +V + PGL+P+ Y E+ + ++F D +SS G+ QGD L P LF + + P R + ++A+LDD L
Sbjct: 724 LTPLQVGVAVPLGCEAAVHTVRHWAHCNSGHTCKVVLKVDFRNAFNTVDRAALLRQVRLHMPGLSPWAEWTY-ERHSRLLFG-DAC----LSSEAGVQQGDPLGPLLFSLALQPALKAARSGPTPPEL-VTAFLDDVCL 855
BLAST of mRNA_H-paniculata_contig18100.4381.1 vs. uniprot
Match: A0A699HZ53_TANCI (Putative reverse transcriptase domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699HZ53_TANCI) HSP 1 Score: 59.7 bits (143), Expect = 9.790e-8 Identity = 49/141 (34.75%), Postives = 73/141 (51.77%), Query Frame = 1
Query: 1 LSERQYGVAVSGGAELM-----GLRAEAHHQLGHWPIALDFINAFNPVKRAAILEEVEIRTPGLTPFVGNCYREKPAHIIFQMDTSERWKISSNTGIHQGDRLEPALFCIPVGPIWHKYREQFEALGVELSA-YLDDQVLI 405
LS+ Q+GV VSGGAE + + +E H+ + +D NAFN V R+A+L EV + P ++ +V Y + A ++ DT I S T + Q D L P F + + P HK ++ L L A YLDD+ +I
Sbjct: 260 LSDFQFGVGVSGGAEAILHSVNRVLSEYHNDGSLAMLIVDCSNAFNLVDRSALLHEVSAKCPSISLWVDFLYGK--ASRLYIGDTH----IWSATEVQQCDPLGPLFFALILHPFLHKIKDSCMLL---LHAWYLDDETVI 391
BLAST of mRNA_H-paniculata_contig18100.4381.1 vs. uniprot
Match: A0A391NU24_9EUKA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Kipferlia bialata TaxID=797122 RepID=A0A391NU24_9EUKA) HSP 1 Score: 52.4 bits (124), Expect = 3.330e-5 Identity = 32/97 (32.99%), Postives = 49/97 (50.52%), Query Frame = 1
Query: 103 DFINAFNPVKRAAILEEVEIRTPGLTPFVGNCYREKPAHIIFQMDTSERWKISSNTGIHQGDRLEPALFCIPVGPIWHKYREQFEALGVELSAYLDD 393
DF NAFN V+R A+L + P L+ + + Y A ++++ + I S G+ QGD L P F + V PI + + F GV++ Y DD
Sbjct: 1 DFQNAFNAVRRDALLIAAKRTMPCLSAYYESAYERGDAALMWRDEC-----IESAEGVRQGDPLSPTAFALTVHPIMVRANKMFS--GVDVVLYHDD 90 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18100.4381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18100.4381.1 >prot_H-paniculata_contig18100.4381.1 ID=prot_H-paniculata_contig18100.4381.1|Name=mRNA_H-paniculata_contig18100.4381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp LSERQYGVAVSGGAELMGLRAEAHHQLGHWPIALDFINAFNPVKRAAILEback to top mRNA from alignment at H-paniculata_contig18100:4486..4890+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18100.4381.1 ID=mRNA_H-paniculata_contig18100.4381.1|Name=mRNA_H-paniculata_contig18100.4381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at H-paniculata_contig18100:4486..4890+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18100:4486..4890+ >mRNA_H-paniculata_contig18100.4381.1 ID=mRNA_H-paniculata_contig18100.4381.1|Name=mRNA_H-paniculata_contig18100.4381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig18100:4486..4890+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |