mRNA_H-paniculata_contig18053.4358.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18053.4358.1
Unique NamemRNA_H-paniculata_contig18053.4358.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18053.4358.1 vs. uniprot
Match: D8LS60_ECTSI (Pantoate--beta-alanine ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS60_ECTSI)

HSP 1 Score: 345 bits (886), Expect = 9.760e-117
Identity = 178/225 (79.11%), Postives = 201/225 (89.33%), Query Frame = 1
Query:    1 QDLDSYPRQLQGDLELLASEGLVDLVFAPSRGEMYSASHRIYVDPVGFDDLPEGVARPGFFRGVATVVTKLLNVVQPDCAYFGQKDALQCILVKRLVEDLNFPVEVVVSDTRREVDGLAMSSRNTYMSHDERAAAPVVFRALEAAAETRQRAAAAGRRATRQELITAAEVVLAAQPLVTSVDYLSVGSPLTMEELQEVGEAGAVVSVALRLGTVRLIDNIVLPPL 675
            +DLD YPRQL+ DLELL  EGLVDLVFAP+R EMYS  HRIYVDP+GFDDLPEGVARPGFFRGVATVVTKLLNVVQPD A+FGQKDALQC+LVKRLVEDLN PV VVVS+T RE DGLAMSSRN YMS +ERAAAP V+ +L AAA+ RQR A AGR A+R+EL+ AAE V++AQPL+TSVDYLSVGSP TMEEL+E+G+AGAVVSVA+RLG+VRLIDN+VLPPL
Sbjct:  125 EDLDRYPRQLEQDLELLGGEGLVDLVFAPTREEMYSPDHRIYVDPLGFDDLPEGVARPGFFRGVATVVTKLLNVVQPDLAFFGQKDALQCVLVKRLVEDLNMPVTVVVSETTREADGLAMSSRNAYMSAEERAAAPAVYLSLRAAADARQREADAGRNASREELVAAAEEVISAQPLITSVDYLSVGSPATMEELEEIGQAGAVVSVAVRLGSVRLIDNVVLPPL 349          
BLAST of mRNA_H-paniculata_contig18053.4358.1 vs. uniprot
Match: A0A835YM10_9STRA (Pantoate--beta-alanine ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM10_9STRA)

HSP 1 Score: 246 bits (629), Expect = 4.060e-78
Identity = 137/230 (59.57%), Postives = 164/230 (71.30%), Query Frame = 1
Query:    1 QDLDSYPRQLQGDLELLASEGLVDLVFAPSRGEMYSASHRIYVDPVGFDDLPEGVARPGFFRGVATVVTKLLNVVQPDCAYFGQKDALQCILVKRLVEDLNFPVEVVVSDTRREVDGLAMSSRNTYMSHDERAAAPVVFRALEAAAETRQRAAAAGRRATRQ------ELITAAEVVLAAQPLVTSVDYLSVGSPLTMEELQEVGEAGAVVSVALRLGTVRLIDNIVLPP 672
            +D D YPRQL+ D+ LL  EGL DLVFAP+   MY   H +YVDP G + L EG ARPGFFRGVATVV KL NVVQPD AYFGQKDALQC++++R+V DLNFP++V V  T R+ DGLA+SSRN Y++ DERAAAPVV RAL AA    QR  AA   A         +L   A   LAA+PLV +V+Y+SVG   TM EL+ V  AGAVVSVA+++G VRLIDN+VL P
Sbjct:   95 EDFDKYPRQLEKDVALLHKEGLADLVFAPTSAVMYGPHHCVYVDPHGVEALSEGAARPGFFRGVATVVAKLFNVVQPDAAYFGQKDALQCVVIRRMVADLNFPLKVRVLPTARDADGLALSSRNAYLTPDERAAAPVVHRALLAARAAWQRGVAAAAAAXXXXXXXXADLEAVARAELAAEPLVAAVEYVSVGCRETMAELESVTAAGAVVSVAVKVGGVRLIDNMVLGP 324          
BLAST of mRNA_H-paniculata_contig18053.4358.1 vs. uniprot
Match: A0A485LIB8_9STRA (Pantoate--beta-alanine ligase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIB8_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.050e-69
Identity = 124/228 (54.39%), Postives = 161/228 (70.61%), Query Frame = 1
Query:    1 QDLDSYPRQLQGDLELLASEGLVDLVFAPSRGEMYSASHRIYVDPVGFDDLPEGVARPGFFRGVATVVTKLLNVVQPDCAYFGQKDALQCILVKRLVEDLNFPVEVVVSDTRREVDGLAMSSRNTYMSHDERAAAPVVFRALEAAAE-----TRQRAAAAGRRATRQELITAAEVVLAAQPLVTSVDYLSVGSPLTMEELQEV-GEAGAVVSVALRLGTVRLIDNIVL 666
            +D D YPR L+ DL LL     VD+VF P+R  MYS S R YVDP GF+D+PEG  RPGFFRGVATVVTKL N+V P  A+FGQKDA+QC+++KRL++DLNFP+E+ V DT RE  GLAMS+RN Y++ DER A+ V+++ L+AAAE     T  R  AA  RAT        E V   +PL+ S+ Y+S+ S  TMEEL +V  + GA++S+A+++G  RLIDNIVL
Sbjct:   93 EDFDKYPRTLEADLALLKRHN-VDIVFTPTRDSMYSPSFRTYVDPEGFNDVPEGQCRPGFFRGVATVVTKLFNIVTPTHAFFGQKDAVQCVVIKRLIDDLNFPIELNVLDTCREESGLAMSTRNQYLTPDERLASAVIYKGLKAAAEHFQTSTAPRIPAAALRAT-------IESVYKTEPLLQSIQYISIASKETMEELDDVVKDEGAIISIAVKVGKCRLIDNIVL 312          
BLAST of mRNA_H-paniculata_contig18053.4358.1 vs. uniprot
Match: A0A1V9Z4S1_9STRA (Pantoate--beta-alanine ligase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z4S1_9STRA)

HSP 1 Score: 224 bits (570), Expect = 1.870e-69
Identity = 122/223 (54.71%), Postives = 153/223 (68.61%), Query Frame = 1
Query:    1 QDLDSYPRQLQGDLELLASEGLVDLVFAPSRGEMYSASHRIYVDPVGFDDLPEGVARPGFFRGVATVVTKLLNVVQPDCAYFGQKDALQCILVKRLVEDLNFPVEVVVSDTRREVDGLAMSSRNTYMSHDERAAAPVVFRALEAAAETRQRAAAAGRRATRQELITAAEVVLAAQPLVTSVDYLSVGSPLTMEELQEVG-EAGAVVSVALRLGTVRLIDNIVL 666
            +D D YPR  + D+  L ++G VD+VF P+   MY   HR YVDP GFDD+PEG  RPGFFRGVATVV KL N+V P  A+FGQKDA+QC+++KRL+EDLNFP+++ V DT+RE DGLAMS+RN Y+S  ER+AA V++  L  A       AA G       L    E +  A+PLV  + Y+SVGS  TMEEL EV   AGAV+SVA+ +G  RLIDNIVL
Sbjct:   89 EDFDKYPRTFEADMAALRAQG-VDIVFVPTTSVMYLPDHRTYVDPTGFDDVPEGTCRPGFFRGVATVVAKLFNIVAPTHAFFGQKDAVQCVVIKRLIEDLNFPIDLRVLDTKREADGLAMSTRNQYLSPSERSAAKVLYAGLRQAKIDFD--AAPGPTIPAAVLRATIETIYRAEPLVGEIQYISVGSKETMEELDEVDTNAGAVISVAVTVGKCRLIDNIVL 308          
BLAST of mRNA_H-paniculata_contig18053.4358.1 vs. uniprot
Match: A0A7S2ESW5_TRICV (Pantoate--beta-alanine ligase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ESW5_TRICV)

HSP 1 Score: 222 bits (565), Expect = 7.890e-69
Identity = 126/226 (55.75%), Postives = 157/226 (69.47%), Query Frame = 1
Query:    1 QDLDSYPRQLQGDLELLASEGLVDLVFAPSRGEMYSASHRIYVDPVGFDDLPEGVARPGFFRGVATVVTKLLNVVQPDCAYFGQKDALQCILVKRLVEDLNFPVEVVVSDTRREVDGLAMSSRNTYMSHDERAAAPVVFRALEAAAETRQ--RAAAAGRRAT--RQELITAAEVVLAAQPLVTSVDYLSVGSPLTMEELQEVGEAGAVVSVALRLGTVRLIDNIVL 666
            +DLD YPRQL+ D ELLA  G VD +FAP    MY  +H  YVDP GFDD  EG +RPG FRGVATVVTKL N+V+PD AYFGQKDA QC+ ++R+  DL+  V V V DT RE DGLAMSSRN Y++ +ER AAPVV+R+L AA +  +  R    G +A     EL      VL ++ LV+ V Y++V S  TM  L+EVGE GAV+S+A ++G+VRLIDNIVL
Sbjct:   74 EDLDRYPRQLERDTELLAESG-VDHLFAPDGDAMYGENHVTYVDPTGFDDTSEGRSRPGHFRGVATVVTKLFNIVRPDVAYFGQKDAAQCVAIRRIASDLDMDVRVEVLDTVREGDGLAMSSRNAYLTDEERRAAPVVYRSLVAARDVMRGRRGEEGGSKAKVKASELEGVVREVLGSERLVSEVQYVAVDSKETMRPLEEVGEEGAVISLACKVGSVRLIDNIVL 298          
BLAST of mRNA_H-paniculata_contig18053.4358.1 vs. uniprot
Match: A0A2D4CFE5_PYTIN (Pantoate--beta-alanine ligase (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFE5_PYTIN)

HSP 1 Score: 219 bits (559), Expect = 1.750e-68
Identity = 123/223 (55.16%), Postives = 151/223 (67.71%), Query Frame = 1
Query:    1 QDLDSYPRQLQGDLELLASEGLVDLVFAPSRGEMYSASHRIYVDPVGFDDLPEGVARPGFFRGVATVVTKLLNVVQPDCAYFGQKDALQCILVKRLVEDLNFPVEVVVSDTRREVDGLAMSSRNTYMSHDERAAAPVVFRALEAAAETRQRAAAAGRRATRQELITAAEVVLAAQPLVTSVDYLSVGSPLTMEELQEVG-EAGAVVSVALRLGTVRLIDNIVL 666
            +D   YPR    D+ LL SEG VD VF PS   MYS  HR YV P GFDDLPEG  RPG FRGVATVVTKL NVVQP  A+FGQKDA QC+L+KRLVEDLN  ++V V    RE DGLA+S+RN Y+S +ERAAAP V+R L  A E  Q AA A    + + + +       A+PL+  + Y+S+GS  TMEE++E+  + GA++SVAL+LG  RLID I L
Sbjct:   37 EDYSKYPRTFDSDMALLRSEG-VDYVFVPSADAMYSKHHRCYVTPEGFDDLPEGRCRPGHFRGVATVVTKLFNVVQPTHAFFGQKDAAQCVLIKRLVEDLNMDIQVEVVPVCREQDGLALSTRNQYLSKEERAAAPAVYRGLRIAKE--QFAAQADATVSAESIRSIIRDEYEAEPLIKEIQYISIGSKETMEEIEEIRTDEGAIISVALKLGNCRLIDTITL 256          
BLAST of mRNA_H-paniculata_contig18053.4358.1 vs. uniprot
Match: K0SVB4_THAOC (Pantoate--beta-alanine ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SVB4_THAOC)

HSP 1 Score: 219 bits (559), Expect = 6.360e-68
Identity = 117/223 (52.47%), Postives = 154/223 (69.06%), Query Frame = 1
Query:    1 QDLDSYPRQLQGDLELLASEGLVDLVFAPSRGEMYSASHRIYVDPVGFDDLPEGVARPGFFRGVATVVTKLLNVVQPDCAYFGQKDALQCILVKRLVEDLNFPVEVVVSDTRREVDGLAMSSRNTYMSHDERAAAPVVFRALEAAAETRQRAAAAG-RRATRQELITAAEVVLAAQPLVTSVDYLSVGSPLTMEELQEVGEAGAVVSVALRLGTVRLIDNIVL 666
            +DLD YPRQL+ D++LL+  G V  VF PS   MY  +H  YVDP GFD+  EG++RPGFFRGVATVVTKL N+VQP  AYFGQKDA+QC L+KR+ EDL+  + + + DT RE DGLAMSSRN Y+S +ER  AP+V+ +L AA E      + G    +  +L    E VL  +PLVT V Y+++    TM+ + +VG+ G V+S+A  +G+VRLIDNIVL
Sbjct:   76 EDLDRYPRQLEKDVKLLSEVG-VSHVFTPSADSMYKKNHVTYVDPCGFDNTMEGISRPGFFRGVATVVTKLFNIVQPTSAYFGQKDAVQCALIKRITEDLDMDINIKIMDTVREDDGLAMSSRNAYLSEEERRRAPIVYTSLMAAREVFDSRLSRGVETVSADDLREVVEGVLETEPLVTEVQYVAIDDTTTMQPISDVGDGGCVISLACVVGSVRLIDNIVL 297          
BLAST of mRNA_H-paniculata_contig18053.4358.1 vs. uniprot
Match: T0QY43_SAPDV (Pantoate--beta-alanine ligase n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QY43_SAPDV)

HSP 1 Score: 219 bits (559), Expect = 8.080e-68
Identity = 122/228 (53.51%), Postives = 154/228 (67.54%), Query Frame = 1
Query:    1 QDLDSYPRQLQGDLELLASEGLVDLVFAPSRGEMYSASHRIYVDPVGFDDLPEGVARPGFFRGVATVVTKLLNVVQPDCAYFGQKDALQCILVKRLVEDLNFPVEVVVSDTRREVDGLAMSSRNTYMSHDERAAAPVVFRALEAA-----AETRQRAAAAGRRATRQELITAAEVVLAAQPLVTSVDYLSVGSPLTMEELQEVGEA-GAVVSVALRLGTVRLIDNIVL 666
            +D D YPR  + D+  L  +G VD+VFAP+   MY   HR YVDPVGFDD+PEG  RPGFFRGVATVV KL N+V P  A+FGQKDA+QC+++KRL+EDLNFP+ + V DT RE DGLAMS+RN Y+S DER A+ +++  L  A     A T     AA  RAT        E +   +PLV  + Y+S+GS  TMEEL +V    GAV+SVA+++G  RLIDNIVL
Sbjct:   87 EDFDKYPRTFEADMAKLREQG-VDIVFAPTTATMYLPDHRSYVDPVGFDDVPEGQCRPGFFRGVATVVAKLFNIVSPTHAFFGQKDAVQCVVIKRLIEDLNFPITLRVMDTMREDDGLAMSTRNQYLSPDERVASSILYAGLRQAKADFDAATTATLPAATLRAT-------IERIYRTEPLVGEIQYISIGSKATMEELVDVDTTQGAVISVAVKVGACRLIDNIVL 306          
BLAST of mRNA_H-paniculata_contig18053.4358.1 vs. uniprot
Match: B8C9Z7_THAPS (Pantoate--beta-alanine ligase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9Z7_THAPS)

HSP 1 Score: 217 bits (552), Expect = 2.650e-67
Identity = 119/223 (53.36%), Postives = 152/223 (68.16%), Query Frame = 1
Query:    1 QDLDSYPRQLQGDLELLASEGLVDLVFAPSRGEMYSASHRIYVDPVGFDDLPEGVARPGFFRGVATVVTKLLNVVQPDCAYFGQKDALQCILVKRLVEDLNFPVEVVVSDTRREVDGLAMSSRNTYMSHDERAAAPVVFRALEAAAETRQRAAAAG-RRATRQELITAAEVVLAAQPLVTSVDYLSVGSPLTMEELQEVGEAGAVVSVALRLGTVRLIDNIVL 666
            +DLD YPRQL+ D ELL   G VD +FAPS   MY  +H  YV+P+GFD   EG++RPG FRGVAT+VTKL N+VQP  AYFGQKDA+QC+L++R+ EDL+  V V + DT RE DGLAMSSRN Y+S +ER  A VV+++L AA E  +   A G    T  +L      VL  +PL+T V Y++V    TM+ ++ VG  G V+S+A  LG VRLIDNIVL
Sbjct:   43 EDLDKYPRQLERDAELLGKIG-VDHIFAPSSDTMYGKNHVTYVEPMGFDKTTEGISRPGHFRGVATIVTKLFNIVQPTNAYFGQKDAVQCVLIRRIAEDLDMDVNVQIMDTVREEDGLAMSSRNAYLSDEEREKAHVVYKSLCAAREVYESRLARGMEEVTADDLREVVRAVLETEPLITEVQYVAVDDLETMQPVERVGNDGCVISLACILGPVRLIDNIVL 264          
BLAST of mRNA_H-paniculata_contig18053.4358.1 vs. uniprot
Match: A0A1Z5JY74_FISSO (Pantoate--beta-alanine ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JY74_FISSO)

HSP 1 Score: 218 bits (554), Expect = 2.670e-67
Identity = 118/223 (52.91%), Postives = 162/223 (72.65%), Query Frame = 1
Query:    1 QDLDSYPRQLQGDLELLASEGLVDLVFAPSRGEMYSASHRIYVDPVGFDDLPEGVARPGFFRGVATVVTKLLNVVQPDCAYFGQKDALQCILVKRLVEDLNFPVEVVVSDTRREVDGLAMSSRNTYMSHDERAAAPVVFRALEAAAETRQRAAAAGRRATRQELITAAEVVLAAQPLVTSVDYLSVGSPLTMEELQEVG-EAGAVVSVALRLGTVRLIDNIVL 666
            +D + YPRQLQ D + LA+ G VD +FAPS  +MY   H  YVDP GFDD  EG +RPG FRGVAT+VTKL N+VQP  AYFGQKDA QC+L++R+V+DLN  V V+V+DT RE DGLAMSSRNTY++  ER AAP+V+++L AA      + +A   A  +E +   E VL ++PL++ + Y+S+ +  TM+ L++V  E GA++S+A +LG+VRLIDNI++
Sbjct:   70 EDFEKYPRQLQIDSDKLAALG-VDYLFAPSVNDMYGKDHVTYVDPEGFDDTSEGKSRPGHFRGVATIVTKLFNIVQPTNAYFGQKDAAQCVLIRRIVDDLNMDVNVIVADTVRESDGLAMSSRNTYLTPTERRAAPIVYQSLCAARTLVLASESAVESAVVRETV---ESVLRSEPLISEIQYVSIDNKSTMQSLEQVNREDGALISLACKLGSVRLIDNIII 288          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18053.4358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS60_ECTSI9.760e-11779.11Pantoate--beta-alanine ligase n=2 Tax=Ectocarpus T... [more]
A0A835YM10_9STRA4.060e-7859.57Pantoate--beta-alanine ligase n=1 Tax=Tribonema mi... [more]
A0A485LIB8_9STRA1.050e-6954.39Pantoate--beta-alanine ligase n=1 Tax=Aphanomyces ... [more]
A0A1V9Z4S1_9STRA1.870e-6954.71Pantoate--beta-alanine ligase n=1 Tax=Achlya hypog... [more]
A0A7S2ESW5_TRICV7.890e-6955.75Pantoate--beta-alanine ligase n=1 Tax=Trieres chin... [more]
A0A2D4CFE5_PYTIN1.750e-6855.16Pantoate--beta-alanine ligase (Fragment) n=1 Tax=P... [more]
K0SVB4_THAOC6.360e-6852.47Pantoate--beta-alanine ligase n=1 Tax=Thalassiosir... [more]
T0QY43_SAPDV8.080e-6853.51Pantoate--beta-alanine ligase n=2 Tax=Saprolegnia ... [more]
B8C9Z7_THAPS2.650e-6753.36Pantoate--beta-alanine ligase (Fragment) n=1 Tax=T... [more]
A0A1Z5JY74_FISSO2.670e-6752.91Pantoate--beta-alanine ligase n=2 Tax=Fistulifera ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18053contigH-paniculata_contig18053:158..3961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score347.4
Seed ortholog evalue4.9e-93
Seed eggNOG ortholog2880.D8LS60
KEGG rclassRC00022,RC00096,RC00141,RC00200
KEGG koko:K00606,ko:K01918
KEGG ReactionR01226,R02473
KEGG Pathwayko00410,ko00770,ko01100,ko01110,map00410,map00770,map01100,map01110
KEGG ModuleM00119
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004592,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006573,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009081,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016874,GO:0016879,GO:0016881,GO:0019752,GO:0032787,GO:0033317,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0051186,GO:0051188,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605
EggNOG free text desc.pantoate-beta-alanine ligase activity
EggNOG OGsCOG0414@1,KOG3042@2759
Ec32 ortholog descriptionPantoate--beta-alanine ligase
Ec32 orthologEc-12_004720.1
EC2.1.2.11,6.3.2.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons4
Model size678
Cds size678
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18053.4358.1prot_H-paniculata_contig18053.4358.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18053 158..3961 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929406.2468362-CDS-H-paniculata_contig18053:157..2761622929406.2468362-CDS-H-paniculata_contig18053:157..276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18053 158..276 +
1691480847.3279788-CDS-H-paniculata_contig18053:157..2761691480847.3279788-CDS-H-paniculata_contig18053:157..276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18053 158..276 +
1622929406.2652047-CDS-H-paniculata_contig18053:1033..12081622929406.2652047-CDS-H-paniculata_contig18053:1033..1208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18053 1034..1208 +
1691480847.3457348-CDS-H-paniculata_contig18053:1033..12081691480847.3457348-CDS-H-paniculata_contig18053:1033..1208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18053 1034..1208 +
1622929406.2814307-CDS-H-paniculata_contig18053:2718..28941622929406.2814307-CDS-H-paniculata_contig18053:2718..2894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18053 2719..2894 +
1691480847.3541727-CDS-H-paniculata_contig18053:2718..28941691480847.3541727-CDS-H-paniculata_contig18053:2718..2894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18053 2719..2894 +
1622929406.2961607-CDS-H-paniculata_contig18053:3753..39611622929406.2961607-CDS-H-paniculata_contig18053:3753..3961Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18053 3754..3961 +
1691480847.3625007-CDS-H-paniculata_contig18053:3753..39611691480847.3625007-CDS-H-paniculata_contig18053:3753..3961Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18053 3754..3961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18053.4358.1

>prot_H-paniculata_contig18053.4358.1 ID=prot_H-paniculata_contig18053.4358.1|Name=mRNA_H-paniculata_contig18053.4358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=226bp
QDLDSYPRQLQGDLELLASEGLVDLVFAPSRGEMYSASHRIYVDPVGFDD
LPEGVARPGFFRGVATVVTKLLNVVQPDCAYFGQKDALQCILVKRLVEDL
NFPVEVVVSDTRREVDGLAMSSRNTYMSHDERAAAPVVFRALEAAAETRQ
RAAAAGRRATRQELITAAEVVLAAQPLVTSVDYLSVGSPLTMEELQEVGE
AGAVVSVALRLGTVRLIDNIVLPPL*
back to top

mRNA from alignment at H-paniculata_contig18053:158..3961+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18053.4358.1 ID=mRNA_H-paniculata_contig18053.4358.1|Name=mRNA_H-paniculata_contig18053.4358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3804bp|location=Sequence derived from alignment at H-paniculata_contig18053:158..3961+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGATTTGGATAGTTACCCAAGACAGCTGCAGGGGGACCTGGAGCTGCT TGCGAGTGAGGGGTTGGTGGACCTTGTGTTTGCCCCGAGTCGTGGTGAGA TGTACTCGGCCTCTCACCGGTGAGTGACAGACGAGGGGAGGGGGGGGGCG GGGGGGAGAGACAAACTAAGCATGCCCATGAGGTGACGTTTGACTGGACT TGACGGCTGTTTAGGCAGTATGCTGCTTGGTAGACCGATAGCATCCTGTT CACACTGCATCAAATTCTGACCCCGTCAGGACTCAGTTCTAGGACTTGAC GCACCTGTTCGACCACACACGCCATAGGCTACAGCAACCTTTTCAATGGA GTATCACTATACCACTCGCATGTGTGCTGTAGGAGAAGTCCACGAAATAT TTTTCACATGGACGACGGACACCCTCGAAAACATTCATTCATGAGTCAAC CCTGCCAAGGTCGGGTGAACTTGAGCTCTGAAGCTCACATAATAGTTCCA TCCTACACACGTGTTGAGATTGTACAGCTGACTTTAATAATCTTGAGTTT TTTTTACATTATCAGCACTAGAGGGATATGGTTTGTTCTTGTTGATGGTC GAGAAGAGTGTTCTTGCGTTTGGCTGTGAGTGAAGTCTAGCGATTGTTCT GATGCTGTGATGATTTTTATATTTCCGGATGGATGCTGCTGCTGCGGTGG GGTGGTGGTCGTGGTGATCGTGGTTGTGGTTGTCGTTGTTGTTGTTGCTG ATCCTCCTCCCTCGAGAGCAGCACTCGAAAACGCCAGTAGATGATACGAT AGGCTACTCCGCCCATCACCTGATCCCCCGCTCGTCACTTTTGTCACGTG TCTACTACGCCTCCTCTATGGTCTAGAATTTATGTTGACCCTGTGGGTTT TGACGATCTACCGGAAGGCGTTGCGAGGCCGGGATTCTTCCGCGGCGTGG CGACGGTGGTGACTAAACTCCTGAACGTAGTGCAACCAGACTGCGCTTAC TTCGGGCAGAAGGATGCGCTCCAGTGTATCTTGGTGAAACGACTTGTGGA GGTACTATACTACTAGTGCTAATATGATGCTGAAAAGTAGTATTGCGAAT ATTTTCTATTGTAGGTGCTGTTTTATTGCATGGCTTCAGAGCTAGACCAT TCCGCACGATCGTGCTGTGTTTTTGTATTTGCAATTGCGATGGTGTGCTT GTTTGATGTTTATTCGGAGTTCTGTTTTTTTCTTCGTATGAAAAGCACGT TCCCGGAGTTCCTGCGTTTCCGGGGGTTCGTGACCAGTTCATGTCAAGCA CAAAAAAATTCGGGTTCATGCTCCGTACTACATCCCGAAATTCGGAACTG AATCATCACCAGCGAGGCCGTTGCTCTCTCGAGAGCCTGGCTCTCTCCCT CGATGAGAGAGAGAGACAGAGAGAGAGAGAGGAAGCGTTATGTCTTTTCT TTGGTGTCTGCGGTGACGTCTTTGTTATTCTTATGTCTTTGTGTGGATAC AGTATCGCGTGCGCCGTCCGTCTTTGGGACAAATATGTATATATTTTGGT TCCTCGTTGTTTTATGTTGTTCGTTTTCGATTTTTTTTAACGCGAAAATG AGGGTATTTCCTCATTTTTTTCTAATATATATATATATATATATATTGTA TATGGTATACTTATTCTCCACTGACGGATTTGTTATTCGTTGTTTTCTGT TTTTGTTGTATTTTTTGGTGCTGATTCATAGTGGAAGCCTCCGCCTTTTT TTGTTCTGGTAGCGGTCCAGTTGTCAGGTTTCAATCGCACGCTGAGTAAA GACTTCGGTCCTTGGTGTCGGTACAGGTATTGACGTGCGTCGTTATCTTT GTTGTGGGGGGTTGGGAGGATTGGTGGGTGAGAGGTTTTGTCCAACAGCC GCTCCGCCTTTCCTCCCCCTTACCGTACCACTGCCTGTACCGTGAGGGAC ACCAACGCGCAGTTTTGCCACGTAGTTCAAGCACAGGCACTTGGGTTGTG TCCGGTACTTGCGCGTGTTGCATGTTAATTTGGAAGAGAGTGAACGGGGC GTAGGGTGCGGTCGACCATCTATAATCTCCCTCGCGTACAGCATGCGTTC CATACAGGATGCGACAGTTGTGTTGATACGTCTCGTAAATACACATAACC ACACCTTGCCATGGTATGTATGCCACCGAATACATGAATCTGTACTGTTT GATCACCGGTTGATTCATCACTGTTGATCATCACCGCCCCCACCGCGATT ATTTTGTTTCTGACCCCCTTACAACATATCTGTCTTGGTCTTGGTCTTGC CTTGTCTGCCTGCCTGTCTGCCTACCTGCCTGTCTGCCAGTCTAAAAGCT TACACTAGAATTTCATTTCCAAGTTCACATGATCAAATTAAATGTTCGTG TTGATACAATTTCAATTGTATCACCCCGATATATATATATGTATTTATTT CCTTCTCTTTTGTCCTAACATTCATTCCTATCAGTCAAAATTATACCCCA AGTTACATAGCATCATGTCATAGCACACTACCTTATATTGCGTATACGTG AATGCGTGCAGGATCTGAATTTCCCCGTGGAGGTAGTCGTGAGCGATACG AGACGAGAGGTGGATGGATTGGCCATGTCTTCCCGCAACACCTACATGTC GCACGACGAGAGGGCGGCGGCGCCGGTGGTGTTCCGAGCACTCGAGGCTG CCGCGGAGACTAGGCAGAGGGCAGCGGCGGCTGGAAGGTGGGGGGGAGAG AGAGAGGGGGACGGGTGATTGTGTACTGTAGGTAAAACATGAAACAGTCC TCATATGAACGACTGACACCATTACGAATTAAAAACAATCATTCATTTGA CTAACTAAAATGATGGTTACAGAAGTAAACCGACCCTGTCACAGTCAATT GGACTATACCTCTGAACCTCGTGTCATAACTCCATTGTACCTACGTTGAG GTTAAGCAGCTGACTTTAGTATCCAGTTGTGTATACACTTACCAATTAGA TAATGACCAATAAGCGGTGAGAATGCCTGGGGCTCGGTGGGCCGTTTGAA CACGATTTGAAACGTGTACCCGGGTAAATTGAGTACAACAAGTAGATAAA TGCGGCAAAATAACGCGATAAAGATTGGTCGACATTTTTGGATCATTCAA AACCGGGCACAACAATGAATATCTATAGGTTTCAACTTGCCAACAGTTGT TTCTAAGACCTTCTAGTGGATGGCATTAGTTTTACATTGTTTTCAAGCGA GCAGAGGCGTTGGTAGTGTAGAACATGATGACACCAATGGGTATCCATCC ATCCTCGCTTAAATGTAGACACGATCAGCAAGACAAGAAAAGGAAATGGT TGTTTTTGACTCCTGTCCTTCCTCCCTCCCTCCCCCATAACCTTAAAAAA CACGTGAAAGGTTCAACTAGCAATCGTTACCTCTGATGAGACTTTGCATT TGATTGGCGTAACGTCACGTATTGAAATATCACACGCGGCAAGAGATAGA AGAAACAGCTGCTCTTCTTCACGTACGTCTTCCCTCCTTCATTCCTTCCT TCCCTCCCCGCTCGTGCGTGACCATCGCCCCGTCACACCCTCCCAGGCGT GCTACTAGACAAGAGTTGATAACCGCGGCCGAGGTTGTGCTTGCGGCGCA GCCGCTGGTTACGTCGGTAGACTACCTATCCGTCGGTAGTCCGTTGACGA TGGAGGAGTTGCAGGAGGTCGGGGAGGCGGGAGCTGTCGTCTCGGTGGCC TTGCGGCTCGGAACCGTCAGGCTCATCGACAATATTGTGTTGCCGCCTTT GTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig18053:158..3961+

>mRNA_H-paniculata_contig18053.4358.1 ID=mRNA_H-paniculata_contig18053.4358.1|Name=mRNA_H-paniculata_contig18053.4358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at H-paniculata_contig18053:158..3961+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGATTTGGATAGTTACCCAAGACAGCTGCAGGGGGACCTGGAGCTGCT
TGCGAGTGAGGGGTTGGTGGACCTTGTGTTTGCCCCGAGTCGTGGTGAGA
TGTACTCGGCCTCTCACCGCAGGATTTGGATAGTTACCCAAGACAGCTGC
AGGGGGACCTGGAGCTGCTTGCGAGTGAGGGGTTGGTGGACCTTGTGTTT
GCCCCGAGTCGTGGTGAGATGTACTCGGCCTCTCACCGAATTTATGTTGA
CCCTGTGGGTTTTGACGATCTACCGGAAGGCGTTGCGAGGCCGGGATTCT
TCCGCGGCGTGGCGACGGTGGTGACTAAACTCCTGAACGTAGTGCAACCA
GACTGCGCTTACTTCGGGCAGAAGGATGCGCTCCAGTGTATCTTGGTGAA
ACGACTTGTGGAGAATTTATGTTGACCCTGTGGGTTTTGACGATCTACCG
GAAGGCGTTGCGAGGCCGGGATTCTTCCGCGGCGTGGCGACGGTGGTGAC
TAAACTCCTGAACGTAGTGCAACCAGACTGCGCTTACTTCGGGCAGAAGG
ATGCGCTCCAGTGTATCTTGGTGAAACGACTTGTGGAGGATCTGAATTTC
CCCGTGGAGGTAGTCGTGAGCGATACGAGACGAGAGGTGGATGGATTGGC
CATGTCTTCCCGCAACACCTACATGTCGCACGACGAGAGGGCGGCGGCGC
CGGTGGTGTTCCGAGCACTCGAGGCTGCCGCGGAGACTAGGCAGAGGGCA
GCGGCGGCTGGAAGGATCTGAATTTCCCCGTGGAGGTAGTCGTGAGCGAT
ACGAGACGAGAGGTGGATGGATTGGCCATGTCTTCCCGCAACACCTACAT
GTCGCACGACGAGAGGGCGGCGGCGCCGGTGGTGTTCCGAGCACTCGAGG
CTGCCGCGGAGACTAGGCAGAGGGCAGCGGCGGCTGGAAGGCGTGCTACT
AGACAAGAGTTGATAACCGCGGCCGAGGTTGTGCTTGCGGCGCAGCCGCT
GGTTACGTCGGTAGACTACCTATCCGTCGGTAGTCCGTTGACGATGGAGG
AGTTGCAGGAGGTCGGGGAGGCGGGAGCTGTCGTCTCGGTGGCCTTGCGG
CTCGGAACCGTCAGGCTCATCGACAATATTGTGTTGCCGCCTTTGTGAGC
GTGCTACTAGACAAGAGTTGATAACCGCGGCCGAGGTTGTGCTTGCGGCG
CAGCCGCTGGTTACGTCGGTAGACTACCTATCCGTCGGTAGTCCGTTGAC
GATGGAGGAGTTGCAGGAGGTCGGGGAGGCGGGAGCTGTCGTCTCGGTGG
CCTTGCGGCTCGGAACCGTCAGGCTCATCGACAATATTGTGTTGCCGCCT
TTGTGA
back to top