mRNA_H-paniculata_contig1801.4347.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1801.4347.1
Unique NamemRNA_H-paniculata_contig1801.4347.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1801.4347.1 vs. uniprot
Match: A0A6H5KJJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ2_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.690e-63
Identity = 94/126 (74.60%), Postives = 106/126 (84.13%), Query Frame = 1 
Query:   52 MWAEVIKKENAAIGIPHRFFLNPNKLVFIARKPTEVDPRTYEADSLLVGEQAAV--PPIQAVAKEGKHDGMGELDANIAQLWKTEAQQWGSFYSQKRPPGADPFSSQRSCWQKPRSKCDVTEYGDR 423
            MWAEVIKKENA IG+PHRFFLNPNKLVFIARKPTEVDPRTYEADSL  G Q ++  P    +A+EG       LDA+ A+LWKTE+Q+WGSFY++KRPPG DPFSSQRSCW+KPRSKCDVTEYGDR
Sbjct:    1 MWAEVIKKENATIGVPHRFFLNPNKLVFIARKPTEVDPRTYEADSLSTGHQGSLESPSRIRLAEEGDKSDEATLDASSAKLWKTESQRWGSFYAKKRPPGVDPFSSQRSCWRKPRSKCDVTEYGDR 126
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BLAST of mRNA_H-paniculata_contig1801.4347.1 vs. uniprot
Match: D8LK45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK45_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 5.460e-34
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    7 ARDGTKVVDEVARQAMWAEVIKKENAAIGIPHRFFLNPNKLVFIARKPTEVDPRTYEADSLLVGEQ 204
            A+DG KVVDEV+RQAMWAEVIKKENA IG+PHRFFLNPNKLVFIARKPTEVDPRTYEADSL  G Q
Sbjct:    2 AKDGAKVVDEVSRQAMWAEVIKKENATIGVPHRFFLNPNKLVFIARKPTEVDPRTYEADSLSTGHQ 67
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BLAST of mRNA_H-paniculata_contig1801.4347.1 vs. uniprot
Match: A0A835Z8L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.020e-16
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   22 KVVDEVARQAMWAEVIKKENAAIGIPHRFFLNPNKLVFIARKPTEVDPRTYEADS 186
            + VDEVAR  MW EVI KENA IG PH FFL+P+KL F+ RKPTEVDPR   A++
Sbjct:    1 QAVDEVARNKMWVEVINKENAVIGRPHTFFLDPSKLCFLPRKPTEVDPRALAAEA 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1801.4347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJJ2_9PHAE1.690e-6374.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK45_ECTSI5.460e-3487.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z8L4_9STRA1.020e-1665.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1801contigH-paniculata_contig1801:325..1534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAM183 family
Ec32 orthologEc-06_008140.1
Exons3
Model size426
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1801.4347.1prot_H-paniculata_contig1801.4347.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1801 325..1534 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929405.220921-CDS-H-paniculata_contig1801:324..5511622929405.220921-CDS-H-paniculata_contig1801:324..551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1801 325..551 -
1691480846.8446789-CDS-H-paniculata_contig1801:324..5511691480846.8446789-CDS-H-paniculata_contig1801:324..551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1801 325..551 -
1622929405.2325225-CDS-H-paniculata_contig1801:973..11241622929405.2325225-CDS-H-paniculata_contig1801:973..1124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1801 974..1124 -
1691480846.854946-CDS-H-paniculata_contig1801:973..11241691480846.854946-CDS-H-paniculata_contig1801:973..1124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1801 974..1124 -
1622929405.246561-CDS-H-paniculata_contig1801:1486..15341622929405.246561-CDS-H-paniculata_contig1801:1486..1534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1801 1487..1534 -
1691480846.864283-CDS-H-paniculata_contig1801:1486..15341691480846.864283-CDS-H-paniculata_contig1801:1486..1534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1801 1487..1534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1801.4347.1

>prot_H-paniculata_contig1801.4347.1 ID=prot_H-paniculata_contig1801.4347.1|Name=mRNA_H-paniculata_contig1801.4347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
MTARDGTKVVDEVARQAMWAEVIKKENAAIGIPHRFFLNPNKLVFIARKP
TEVDPRTYEADSLLVGEQAAVPPIQAVAKEGKHDGMGELDANIAQLWKTE
AQQWGSFYSQKRPPGADPFSSQRSCWQKPRSKCDVTEYGDR*
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mRNA from alignment at H-paniculata_contig1801:325..1534-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1801.4347.1 ID=mRNA_H-paniculata_contig1801.4347.1|Name=mRNA_H-paniculata_contig1801.4347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1210bp|location=Sequence derived from alignment at H-paniculata_contig1801:325..1534- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGCGCGGGATGGAACCAAAGTTGTGGATGAAGTCGCCAGACAGGT
ATTGTTCTTTTTTACCCAATGTGACAATAATATACAACCCAGAGAGGTAT
GGTGAGTCTGGCTGCAATTTGTCTTTACCGCAACCTATAGAATATTTAAC
ATTTCCTTCGCGGTCTCGTCGCGTCGTGCAGCAACGACCAAAACCTTCTC
GATGTTCACACCATAGCATTGCACCTGCTTCCCCATGAAAATGTTATTAA
GGGCGTAAGAGAGCCTAAAACCAGTGTTCGCCCATATGTCGACATCTTTA
CGGACACGAAAGCATCAGCACAGCCAGCTCTTCTCTTCAATTGCAAGAAC
CTCCTCCAACATGCGTAGGTTTCTAATTACCGAATGCGGATGCGGTCTGA
CTACTCACAGGCCATGTGGGCGGAGGTCATCAAGAAAGAGAATGCCGCAA
TCGGTATTCCCCATCGCTTCTTTCTCAATCCCAACAAACTGGTTTTCATT
GCCCGAAAACCAACGGAGGTGGACCCGCGGACTTACGAGGCTGACTCTCT
TTTAGTAGGTGGTGAGGTGAGACATACCGGATGAAATGTTGCCCAGTTGA
CTGCGGTCAGGTATTTCTACCGACAAATATGTCTAAAAACTCGTCGACGG
AATCTGCTTGTCGTGTATGACCTATTCTCGCTTACTGAATGAAAAGCATT
CGCCAAATCTACTTGATCTAGGTAGGGCCTGAATCGTTGGTTCAGAATTG
ATTTACATACGCTTCACGTGGCGAAGTACGTTGGAGTTGTTGGACTGGTG
TACACGATCTACGAACTCGAATGTTGAGGCAGGGACAGGCTGGGCATTTA
CGCATACATGGGGCAGCGTTTACCAGTGTAATCGCCGACAAGATACATTT
AGTCGATACTTTTTATATCAACATCGTGCTTTTTCCGTCACGGCGACGTG
ACTACATCACGCAGGAGCTCTCCAATGCAAAAGAACAGGCTGCCGTGCCA
CCAATTCAAGCGGTTGCCAAAGAAGGAAAACACGATGGCATGGGCGAACT
AGATGCTAACATTGCCCAGCTCTGGAAAACAGAGGCCCAGCAATGGGGAA
GCTTCTACAGCCAAAAAAGGCCACCGGGAGCGGATCCATTTAGCTCGCAG
CGGAGCTGTTGGCAGAAACCACGCTCAAAATGCGATGTAACGGAATATGG
GGACAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1801:325..1534-

>mRNA_H-paniculata_contig1801.4347.1 ID=mRNA_H-paniculata_contig1801.4347.1|Name=mRNA_H-paniculata_contig1801.4347.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig1801:325..1534- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGCGCGGGATGGAACCAAAGTTGTGGATGAAGTCGCCAGACAGAT
GACTGCGCGGGATGGAACCAAAGTTGTGGATGAAGTCGCCAGACAGGCCA
TGTGGGCGGAGGTCATCAAGAAAGAGAATGCCGCAATCGGTATTCCCCAT
CGCTTCTTTCTCAATCCCAACAAACTGGTTTTCATTGCCCGAAAACCAAC
GGAGGTGGACCCGCGGACTTACGAGGCTGACTCTCTTTTAGTAGGTGGCC
ATGTGGGCGGAGGTCATCAAGAAAGAGAATGCCGCAATCGGTATTCCCCA
TCGCTTCTTTCTCAATCCCAACAAACTGGTTTTCATTGCCCGAAAACCAA
CGGAGGTGGACCCGCGGACTTACGAGGCTGACTCTCTTTTAGTAGGTGAA
CAGGCTGCCGTGCCACCAATTCAAGCGGTTGCCAAAGAAGGAAAACACGA
TGGCATGGGCGAACTAGATGCTAACATTGCCCAGCTCTGGAAAACAGAGG
CCCAGCAATGGGGAAGCTTCTACAGCCAAAAAAGGCCACCGGGAGCGGAT
CCATTTAGCTCGCAGCGGAGCTGTTGGCAGAAACCACGCTCAAAATGCGA
TGTAACGGAATATGGGGACAGGTAAAACAGGCTGCCGTGCCACCAATTCA
AGCGGTTGCCAAAGAAGGAAAACACGATGGCATGGGCGAACTAGATGCTA
ACATTGCCCAGCTCTGGAAAACAGAGGCCCAGCAATGGGGAAGCTTCTAC
AGCCAAAAAAGGCCACCGGGAGCGGATCCATTTAGCTCGCAGCGGAGCTG
TTGGCAGAAACCACGCTCAAAATGCGATGTAACGGAATATGGGGACAGGT
AA
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