prot_H-paniculata_contig17972.4328.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig17972.4328.1
Unique Name	prot_H-paniculata_contig17972.4328.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	183

Homology

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BLAST of mRNA_H-paniculata_contig17972.4328.1 vs. uniprot
Match: A0A6H5JV23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV23_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 5.880e-13
Identity = 42/140 (30.00%), Postives = 77/140 (55.00%), Query Frame = 0

Query:   24 AHSLVVIQYELLCKSGTSPSMAERCRQMKEDIDVWEASVDELSHIPFWFIMQEVARLLAGVIGLWAVFGKSAGAARIYMYSWPVLFLTGTIVQFGINY---RWHIGLRQDSAVVVMAFIFNIYWVLYYTKVAWSYHMRLK 160
            A ++V   Y++ CK   +P   E C +   +I+  E  V+   ++P    ++ V  ++AG +GL+AVF  +A +A+IY+++W   F  G + ++ +     ++ I    +  VV+   +  I+ +LYY KV WS+H RLK
Sbjct:   54 AIAIVQSLYDMDCKD--APVQTEDCLKRSHEIEQMEFQVELFENLPVIVYVEAVIAMIAGAVGLFAVFKSNALSAKIYLWTWLPRFFVGLVARYTMRAEMKQYGIDNNNEPGVVINELVTAIF-LLYYVKVTWSFHQRLK 190

[Close]

BLAST of mRNA_H-paniculata_contig17972.4328.1 vs. uniprot
Match: D8LNW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW7_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.370e-12
Identity = 43/138 (31.16%), Postives = 71/138 (51.45%), Query Frame = 0

Query:   32 YELLCKSGTSPSMAERCRQMKEDIDVWEASVDELSHIPFWFIMQEVARLLAGVIGLWAVFGKSAGAARIYMYSWPVLFLTGTIV---------QFGINYRWHIGLRQDSAVVVMAFIFNIYWVLYYTKVAWSYHMRLK 160
            Y+  CK   +P   E C Q+  +I+  E  V+   ++P    ++ +  +LAG +GL+AVF  +A +A+IY++ W   F  G +          Q+GI+         D   VV+  + ++   LY+ KVAWS+H RLK
Sbjct:   87 YDKDCKD--APVQTEDCLQLSHNIEQAEFEVELFDNLPVIVYVEAIIAMLAGAVGLFAVFKSNALSAKIYLWMWLPRFFVGLVAKYTLRAVMKQYGID-------NSDGPGVVIGHLVDVVVFLYFVKVAWSFHQRLK 215

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig17972.4328.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig17972.4328.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JV23_9PHAE	5.880e-13	30.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LNW7_ECTSI	2.370e-12	31.16	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 154..182
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..67
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 68..91
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 120..130
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 100..119
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 92..99
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 131..153
None	No IPR available	TMHMM	TMhelix		coord: 68..90
None	No IPR available	TMHMM	TMhelix		coord: 134..156
None	No IPR available	TMHMM	TMhelix		coord: 97..119

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig17972	contig	H-paniculata_contig17972:1818..3807 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig17972.4328.1	mRNA_H-paniculata_contig17972.4328.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig17972 418..4019 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig17972.4328.1 ID=prot_H-paniculata_contig17972.4328.1|Name=mRNA_H-paniculata_contig17972.4328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp
MDSPYALAFRFSSRFLFLSCRTGAHSLVVIQYELLCKSGTSPSMAERCRQ
MKEDIDVWEASVDELSHIPFWFIMQEVARLLAGVIGLWAVFGKSAGAARI
YMYSWPVLFLTGTIVQFGINYRWHIGLRQDSAVVVMAFIFNIYWVLYYTK
VAWSYHMRLKMVRDYALANNAHKEEWMAGSRV*