mRNA_H-paniculata_contig17972.4328.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17972.4328.1
Unique NamemRNA_H-paniculata_contig17972.4328.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17972.4328.1 vs. uniprot
Match: A0A6H5JV23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV23_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.990e-11
Identity = 42/140 (30.00%), Postives = 77/140 (55.00%), Query Frame = 3 
Query:  282 AHSLVVIQYELLCKSGTSPSMAERCRQMKEDIDVWEASVDELSHIPFWFIMQEVARLLAGVIGLWAVFGKSAGAARIYMYSWPVLFLTGTIVQFGINY---RWHIGLRQDSAVVVMAFIFNIYWVLYYTKVAWSYHMRLK 692
            A ++V   Y++ CK   +P   E C +   +I+  E  V+   ++P    ++ V  ++AG +GL+AVF  +A +A+IY+++W   F  G + ++ +     ++ I    +  VV+   +  I+ +LYY KV WS+H RLK
Sbjct:   54 AIAIVQSLYDMDCKD--APVQTEDCLKRSHEIEQMEFQVELFENLPVIVYVEAVIAMIAGAVGLFAVFKSNALSAKIYLWTWLPRFFVGLVARYTMRAEMKQYGIDNNNEPGVVINELVTAIF-LLYYVKVTWSFHQRLK 190
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BLAST of mRNA_H-paniculata_contig17972.4328.1 vs. uniprot
Match: D8LNW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW7_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.180e-10
Identity = 43/138 (31.16%), Postives = 71/138 (51.45%), Query Frame = 3 
Query:  306 YELLCKSGTSPSMAERCRQMKEDIDVWEASVDELSHIPFWFIMQEVARLLAGVIGLWAVFGKSAGAARIYMYSWPVLFLTGTIV---------QFGINYRWHIGLRQDSAVVVMAFIFNIYWVLYYTKVAWSYHMRLK 692
            Y+  CK   +P   E C Q+  +I+  E  V+   ++P    ++ +  +LAG +GL+AVF  +A +A+IY++ W   F  G +          Q+GI+         D   VV+  + ++   LY+ KVAWS+H RLK
Sbjct:   87 YDKDCKD--APVQTEDCLQLSHNIEQAEFEVELFDNLPVIVYVEAIIAMLAGAVGLFAVFKSNALSAKIYLWMWLPRFFVGLVAKYTLRAVMKQYGID-------NSDGPGVVIGHLVDVVVFLYFVKVAWSFHQRLK 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17972.4328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JV23_9PHAE2.990e-1130.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNW7_ECTSI1.180e-1031.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17972contigH-paniculata_contig17972:418..4019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2161
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17972.4328.1prot_H-paniculata_contig17972.4328.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17972 1818..3807 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929402.5829575-UTR-H-paniculata_contig17972:417..18171622929402.5829575-UTR-H-paniculata_contig17972:417..1817Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17972 418..1817 -
1691480845.5978935-UTR-H-paniculata_contig17972:417..18171691480845.5978935-UTR-H-paniculata_contig17972:417..1817Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17972 418..1817 -
1622929402.6762385-UTR-H-paniculata_contig17972:3807..40191622929402.6762385-UTR-H-paniculata_contig17972:3807..4019Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17972 3808..4019 -
1691480845.6394277-UTR-H-paniculata_contig17972:3807..40191691480845.6394277-UTR-H-paniculata_contig17972:3807..4019Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17972 3808..4019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929402.632112-CDS-H-paniculata_contig17972:1817..19161622929402.632112-CDS-H-paniculata_contig17972:1817..1916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17972 1818..1916 -
1691480845.6115057-CDS-H-paniculata_contig17972:1817..19161691480845.6115057-CDS-H-paniculata_contig17972:1817..1916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17972 1818..1916 -
1622929402.6467597-CDS-H-paniculata_contig17972:2696..29201622929402.6467597-CDS-H-paniculata_contig17972:2696..2920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17972 2697..2920 -
1691480845.6211035-CDS-H-paniculata_contig17972:2696..29201691480845.6211035-CDS-H-paniculata_contig17972:2696..2920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17972 2697..2920 -
1622929402.6610146-CDS-H-paniculata_contig17972:3581..38071622929402.6610146-CDS-H-paniculata_contig17972:3581..3807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17972 3582..3807 -
1691480845.6305652-CDS-H-paniculata_contig17972:3581..38071691480845.6305652-CDS-H-paniculata_contig17972:3581..3807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17972 3582..3807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17972.4328.1

>prot_H-paniculata_contig17972.4328.1 ID=prot_H-paniculata_contig17972.4328.1|Name=mRNA_H-paniculata_contig17972.4328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp
MDSPYALAFRFSSRFLFLSCRTGAHSLVVIQYELLCKSGTSPSMAERCRQ
MKEDIDVWEASVDELSHIPFWFIMQEVARLLAGVIGLWAVFGKSAGAARI
YMYSWPVLFLTGTIVQFGINYRWHIGLRQDSAVVVMAFIFNIYWVLYYTK
VAWSYHMRLKMVRDYALANNAHKEEWMAGSRV*
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mRNA from alignment at H-paniculata_contig17972:418..4019-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17972.4328.1 ID=mRNA_H-paniculata_contig17972.4328.1|Name=mRNA_H-paniculata_contig17972.4328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3602bp|location=Sequence derived from alignment at H-paniculata_contig17972:418..4019- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGTGTTAAGCTGCCCTTTGAACAAGGTACTCGCCGGAACGCGGATATG
ACGTTGTGTACATGTTGAAATGTCAACTGGTATGTGGCGATGCGGTTGGC
TCGCTGTCGTCGATTTCGTCCATACCTGGAGTCTGGGCAATAAAAACTGT
TTTTGGTATCTGACCGCCTGGCTCAAAATACCGATTAAAGGGACGAAGAT
CGGACGGAGTACATGGACTCACCTTACGCCCTTGCTTTTCGCTTTTCCTC
TCGTTTTCTTTTTCTCTCCTGCCGAACGGGCGCTCACTCCCTTGTCGTCA
TACAGTACGAACTGTTGTGTAAAAGTGGCACATCGCCCTCAATGGCTGAG
CGGTGCAGGCAGATGAAGGAAGATATCGACGTGTGGGAAGCTTCAGTCGA
CGAGTTATCTCATATCCCCTTCTGGTTCATCATGCAAGGTATGTACTGCC
CTTCCTTCTACGTGTCGATACAGACGAGAACAGACCACACCGGCGGGGTA
GCTGCGGATCAACGGAAAAGTCACCTTGTCGGAGTAGGGTTTGTTTTACC
ATATGTCCAAAACCTTTGCCGATGAATGTCCAAGAATGTAAGGTTGTCCA
AGCATTCGTGGTAGATGTTTGTGTGCACAAATTCCATGTGGAATATATGT
GGTGATATATTTCGTCTACTGAAAGCTAGCAAGTTACATCACTGAGAAGT
ATGAAAACAAGTTGTGACTAACGGTAAAGTAGAGGTGTCAGTTGAGTACG
AAATAAAGGCGAGACCCAACACCCCCCGCACCTAAACTTGGTAAATTACA
TTTTGTTTGTGCTGAACTCTTGGTACTAATGAACTATCGATGGCACGGAA
GTGTTGACGCTATTTCCACGATGCGAAACAATTGTAGTGGCGACTTCGAC
CTCGCAAGCAACAGTGATGCAAGGCGATCCGTGTTTTTGGTTTCATCGTC
CATAGGTAGACAGGCATGCCATACTCTTTCCACTTTGCCCCCACACCATC
CGGAACGCTTGTTCAGCACACGGATACCTTGTGTCTCCTGCCCCTTCACG
TTCGCTGTTTGTTTTTTTATAATCGTTGTAAACATGCGTGCGAGAGCAGA
GGTGGCACGCCTGCTGGCAGGGGTGATTGGCCTTTGGGCCGTGTTCGGCA
AAAGCGCGGGTGCAGCCCGGATCTACATGTACTCTTGGCCAGTGCTGTTT
CTGACGGGCACGATAGTGCAATTTGGGATCAATTACAGGTGGCATATAGG
ACTTCGCCAGGATTCGGCTGTCGTGGTGATGGCCTTCATTTTCAACATCT
ACTGGGTTTTATACTACACGAAGGTACAAGTGCATTTTTTTCTTGTTTGA
ACAGTCAGTACAAGTCGAAGCAGATGGATGATGGCAGCTTCTTTGCGGCG
TTTGATTTGGTGAAATCTCTTTTTCAGTTATCACTTCATCGTAACAATTT
GAACGCACCCTTCCAAACTTGACTGGTTGTTTTGGGTAGCCTTATGAGCT
ATCGTAACAGTGCTCTGAGTCAAGTAATGGAACTAGCTCCCCCATGAATG
GGCGCTGTAAGTGATCCCGACAACGATGGCGAGGGTCTCCATTCCTGTGT
TGCATTATTTAATGTGTTATAGTTGTTGCCGTTCACTTCAATCTTGGACG
TGTGTAGCTGTGAGCTTCTTGAGTGATGACGCTCACCGACAATATCTGCG
CGTGTGTGTTTCTGTACCTGGTGAGTGTGGCGACAAGATGTCTATTTCGT
ATATCGGCTTGTTCGTACTACGAAACGTGTTGCGTACAGATACGCAGTAA
GCACCCACGGAGAATGCGTTTATCTCTCCGCTCCACCTCGAGGGTTTGTA
TACCGCACATGTCCCACAAATGCAGGGGTATTTTTTTTCAATGCTACTTC
ACTTGCAAAGGAAGAGTTGAATAAACCCTGGATCCAGCTGCCACAAGCTC
TGCTTCAGCGAACTATTACATTGGTATGCGCTTCACGTCATGTAACTAAA
AAAATGTTACTGCGCCTTGAAAATTGAAGAGTTGCTGTAAGTAGCAACGC
TCACAACAAGAGAGCGATTGCAATGATCCTCTCCTTCCTGCCGTGCCCCA
CAGGTCGCGTGGTCATACCATATGAGACTGAAGATGGTCCGTGACTACGC
GCTTGCGAATAATGCCCACAAAGAGGAATGGATGGCTGGAAGTCGTGTTT
AGAATTATCCGAGTACCCTTTACTCACACGCATGGACATTATGTAAGCCA
TGGCATCGAGGTTGGGAGGTTGATGATAGTCAGAAGGAAAGGGGCGGCAG
GTAATTTCACGTGGTGATATTGTTTTGGCGGTAAAATTCGTTGCATTTGA
AGGGCGTAGCTAGGCCCTGTCTCCTAGTGTACAGTATAAATACAATGCCG
ATTAACGTGCTGCTTGCGCATAAAAAATGTGCAAAACTCCGACGCCTAAA
ATCGGGTAGTTCTCCATTACGCTGTTGAAATAAGCATCGACGAAAAAAAA
GCAGAAACGAGCGAGAAATGCCGTTCAAGCAGGCCTCCATGAAGTGAATA
CACCTAAAAAACTGCGTGTTCCCTTCGCTGGTGTTTGAACAAAGGCTTTC
GTTTGATTTACTGCATAGGTAATTTATGTCTAGATTTCGATAAGGCCATT
CGTCATTGATATTGTATGCGTCAGATGAAGCATTTGTTTTCGGGGCCAAT
GTGACAAAAAGGTGTAAATATACTCTGCAGAAATACAAGGGAAAACCAGG
AGCTGTCATAAGGGTCAGAGACTGTAGTAGCTAGAGTAGGAAGACAACAT
ACTTCTTAGCGTGCTGTCCCAATCTCACAGAGCCGCCCATCGTTATATAC
CTCATCACAATTGGCGTTGTCTACGGTTTTGGTTATTTTGAGTCCTCAGT
CGTTTAGCGTGCTCTCCCAATCTCACAGAGCCGCCAACGTTATATACTAA
GTTGCCTTTTTGCGGTTGTATTTTATTGTGTGAGGCAGACCCGACGCACC
TGTAGTGCAGGGCCTGCACATCTACTGTCTTTGGTGACTACTGGCTGACT
TGAAACGCGCTGCTTGATTGCTTATTCGATGCATATTGCTACCTGATTGT
TAGACTACGTTGCTGACAACATTTCTGGGTGTTTTTTCCGGGTTACTGGA
CAGCATTCCTGTCTGTGTTTCACTAGGGTACTGACAGTATTTCTGTGTCT
TTCGACTTGATTGCTCAGATTTTGTCATTTGACTGCCTTGAATTTCGATC
GTTTATTCTGGTCTTGTATTCACTTTTGGTGAACTCGTCTTGTTTCGGTT
TTCCATAAGTGTTCCACGCTTAACATCACCGTGCTTTGATCAGGTTCAGA
CCACTTGTCTGCCGCATCGATAATTTTTGTTGCAGCCGCTTTCTGTGTGA
ATCGCTGGATCGCTATATCGATCCGCTGCTGTACTGTCACATTGTTTTTC
GTCGCTTTGCCATTTTCAGCCACCACGCGTATTTGTCGTCCACTGCCACA
CGTAAAAACTACGGTTTGCTTGGACCTTCACACCATTGCTTGCTGTGCAA
TTGAACGAAACTGAAACTATACTACACAACTTGAACTGTATCACGTTGTT
TG
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Coding sequence (CDS) from alignment at H-paniculata_contig17972:418..4019-

>mRNA_H-paniculata_contig17972.4328.1 ID=mRNA_H-paniculata_contig17972.4328.1|Name=mRNA_H-paniculata_contig17972.4328.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at H-paniculata_contig17972:418..4019- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTCACCTTACGCCCTTGCTTTTCGCTTTTCCTCTCGTTTTCTTTT
TCTCTCCTGCCGAACGGGCGCTCACTCCCTTGTCGTCATACAGTACGAAC
TGTTGTGTAAAAGTGGCACATCGCCCTCAATGGCTGAGCGGTGCAGGCAG
ATGAAGGAAGATATCGACGTGTGGGAAGCTTCAGTCGACGAGTTATCTCA
TATCCCCTTCTGGTTCATCATGCAAGATGGACTCACCTTACGCCCTTGCT
TTTCGCTTTTCCTCTCGTTTTCTTTTTCTCTCCTGCCGAACGGGCGCTCA
CTCCCTTGTCGTCATACAGTACGAACTGTTGTGTAAAAGTGGCACATCGC
CCTCAATGGCTGAGCGGTGCAGGCAGATGAAGGAAGATATCGACGTGTGG
GAAGCTTCAGTCGACGAGTTATCTCATATCCCCTTCTGGTTCATCATGCA
AGAGGTGGCACGCCTGCTGGCAGGGGTGATTGGCCTTTGGGCCGTGTTCG
GCAAAAGCGCGGGTGCAGCCCGGATCTACATGTACTCTTGGCCAGTGCTG
TTTCTGACGGGCACGATAGTGCAATTTGGGATCAATTACAGGTGGCATAT
AGGACTTCGCCAGGATTCGGCTGTCGTGGTGATGGCCTTCATTTTCAACA
TCTACTGGGTTTTATACTACACGAAGAGGTGGCACGCCTGCTGGCAGGGG
TGATTGGCCTTTGGGCCGTGTTCGGCAAAAGCGCGGGTGCAGCCCGGATC
TACATGTACTCTTGGCCAGTGCTGTTTCTGACGGGCACGATAGTGCAATT
TGGGATCAATTACAGGTGGCATATAGGACTTCGCCAGGATTCGGCTGTCG
TGGTGATGGCCTTCATTTTCAACATCTACTGGGTTTTATACTACACGAAG
GTCGCGTGGTCATACCATATGAGACTGAAGATGGTCCGTGACTACGCGCT
TGCGAATAATGCCCACAAAGAGGAATGGATGGCTGGAAGTCGTGTTTAGG
TCGCGTGGTCATACCATATGAGACTGAAGATGGTCCGTGACTACGCGCTT
GCGAATAATGCCCACAAAGAGGAATGGATGGCTGGAAGTCGTGTTTAG
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