mRNA_H-paniculata_contig17898.4297.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17898.4297.1
Unique NamemRNA_H-paniculata_contig17898.4297.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A2P6V0L8_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0L8_9CHLO)

HSP 1 Score: 141 bits (356), Expect = 5.860e-35
Identity = 82/224 (36.61%), Postives = 119/224 (53.12%), Query Frame = 1
Query:    4 WRAAMEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVKLLPEFSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 675
            W+ AM++E+ +L+ N TW    L   P        KW++K K    G++ RY+ARLV QGF   EG D+ E  APV++ ST+RTV S AA  D ++   DI   +LN  ++EE++                        Y  +VGSLMY S  TR DI  AV   AR M +P  + ++  K++ RY++  P++GITFG  +   GL+ F DAD A D +   S+
Sbjct: 1755 WQLAMDDEMASLIANDTWT---LCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQDLDLHQLDIKTAFLNGTIDEEVYTH---------------------SYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFG--AGPPGLQVFCDADHAGDIDTRRST 1952          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A2P6UYX8_9CHLO (Retrotransposon Ty1-copia subclass n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYX8_9CHLO)

HSP 1 Score: 137 bits (345), Expect = 1.290e-34
Identity = 81/221 (36.65%), Postives = 116/221 (52.49%), Query Frame = 1
Query:   13 AMEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVKLLPEFSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 675
            AM++E+ +L+ N TW    L   P        KW++K K    G++ RY+ARLV QGF   EG D+ E  APV++ ST+RTV S A   D ++   DI   +LN  ++EE++                        Y  +VGSLMY S  TR DI  AV   AR M +P  + ++  K++ RY++  P++GITFG  S G  L+ F DAD A D +   S+
Sbjct:   72 AMDDEMASLIANDTWT---LCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAGRQDLDLHQLDIKTAFLNGTIDEEVYTH---------------------SYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRST 266          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A6L2NYR2_TANCI (Retrotransposon protein, putative, Ty1-copia subclass (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NYR2_TANCI)

HSP 1 Score: 137 bits (344), Expect = 2.170e-33
Identity = 77/237 (32.49%), Postives = 128/237 (54.01%), Query Frame = 1
Query:    4 WRAAMEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVK-----LLPE--------FSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 675
            W+ A+++E+ ++++N TW    L  LP+       KWIFK+K+K  G++ +++ARLV QGF   EG D+F+T APV+RM+T+R + +L A H+  I   D+   +LN  ++EE+++K     ++P           S       G+  +  EY   +G LMYA   T  DI YAV + +R   +P R+ +     +F+YI      G+++        L+G+ DA W    ED+ S+
Sbjct:  792 WKEAIDDEIGSIMENNTWV---LSNLPLGCKPLGCKWIFKKKMKVDGTINKFKARLVIQGFRQKEGIDYFDTYAPVSRMTTIRLLLALVATHNLVIHQMDVKIAFLNGDLDEEVYMKQPKRCVMPGDNHKVCKLVKSLKARPNTGKPVDQLEYSRTIGCLMYAMTNTGPDIAYAVGRLSRFTSNPSRQHWQAITRVFKYIKGTMSYGLSY--VEYPSVLKGYSDASWINHVEDSSST 1023          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A699IK98_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699IK98_TANCI)

HSP 1 Score: 128 bits (322), Expect = 1.240e-32
Identity = 78/211 (36.97%), Postives = 114/211 (54.03%), Query Frame = 1
Query:   40 VKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVKLLPEFSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYS 672
            + N TWE  DL   P    A   KWI KRK+K  GS+ +Y+ARLV QGF   E  DFF+T A VAR+ST+R + +LAA HD  I   D+   +LN  ++E++++K    F      +  G   +  EY   VG LMYA   TR +I +AV + +R   +P    +     +F+Y+    + G+T+ G  +   +EG+ DA W  + ED  S
Sbjct:    1 MHNDTWELTDL---PRGCKALGCKWILKRKMKVDGSIDKYKARLVIQGFRQKEEIDFFDTYALVARISTIRLLLALAAIHDLVIHQMDVKTAFLNGDLDEKIYMKQPEGF------VMLGHE-SKLEYSRAVGCLMYAMINTRPNITFAVRKLSRYNSNPSALHWQALGRVFQYLKGTVDYGLTYSGYPSV--IEGYSDASWINNMEDHSS 199          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: Q10P45_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q10P45_ORYSJ)

HSP 1 Score: 125 bits (314), Expect = 2.250e-29
Identity = 76/239 (31.80%), Postives = 128/239 (53.56%), Query Frame = 1
Query:    4 WRAAMEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFV------KLLPEFSSF-SRGIPCGRSG------NSSEYRGMVGSL------MYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAED 663
            W+ A+  E+ +++ NGTWE  +    P        KW+FK+KL+  G++ +Y+ARLVA+G++  EGEDFF+T +PVAR+ T+R + +LAA HD  +   D+   +LN  +EEE+++       ++ E   + S+       G      N    RG  G +      M+ SA TR DI +AV + +R + +P  + +   + + RY+       I + G      LEG+ D++W  DA++
Sbjct:  729 WKEAVHSEMDSMMSNGTWEVVER---PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLITIRVLLALAASHDLLVHQMDVKTAFLNGELEEEIYMDQPDSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGYEGGIHLCNPTMWTSA-TRPDISFAVSKMSRFVSNPGDDHWQALERVMRYLKGTMSYRIHYTGYPKV--LEGYSDSNWISDADE 961          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A2N9HB99_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HB99_FAGSY)

HSP 1 Score: 124 bits (312), Expect = 4.070e-29
Identity = 81/227 (35.68%), Postives = 127/227 (55.95%), Query Frame = 1
Query:    4 WRAAMEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVKLLPE---FSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 675
            W+ AM+EEL AL+K GTW+  DL   P  ++A   KW++K K + GG+V RY+ARLVA+GF+   G D+ ET APVAR+S+VRT+ +++    + +   D+   + N  + EE++++L P     S   + +   +  +S     +V SL+Y +  TR DI YAVH   + M  P    ++    I  Y+      G+ F  +S+   L+ + DADWA D  D  S+
Sbjct:  644 WQQAMKEELDALLKTGTWDLVDL---PAGKSALGCKWVYKIKTRSGGTVDRYKARLVAKGFTQEYGIDYEETFAPVARISSVRTLIAVSVSRHWPLFQMDVKNAFFNGELIEEVYMQLPPASPFLSMVFQLVHMIQLCSSDAQIMLVESLVYLTV-TRPDISYAVHIVIQFMVAPRSLHYAVVLRILWYLKGTLFHGLHFSSQSS-LTLQAYSDADWAGDPTDRRST 865          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: UPI001246877E (uncharacterized protein LOC115967312 n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI001246877E)

HSP 1 Score: 116 bits (290), Expect = 3.030e-28
Identity = 79/241 (32.78%), Postives = 121/241 (50.21%), Query Frame = 1
Query:   16 MEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVK-----LLPEF----------------SSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 675
            M ++L    +N  W    L   P       TKWIF+ K  E G+V   +ARLVAQG+S +EG D+ ET A VARM ++R + +LA +  F+    D+   +LN  ++E+++V+     + P F                 S  R    GR+ + S YR M+GSL+Y +A +R DI Y++   AR   +P     +  K I +Y+    E G+ +  K     L  + DADWA +A+D  S+
Sbjct:    1 MHDKLLQFQRNDVWT---LVSRPEGEHIIGTKWIFRNKTDEEGNVIWNKARLVAQGYSQMEGVDYDETFALVARMESIRILLALACQLKFKFYQMDVKTAFLNGFLKEDIYVEQPKGFIDPHFPDHVPQESTLWVKASPQSLIRQKDSGRNVDPSLYRSMIGSLLYLTA-SRPDISYSIGVCARYQANPKESHMTALKRIIKYVKTTAEFGVWYS-KDTSDVLARYSDADWAGNADDRKST 236          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A1S4AI32_TOBAC (uncharacterized protein LOC107797687 n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4AI32_TOBAC)

HSP 1 Score: 119 bits (297), Expect = 5.230e-28
Identity = 78/223 (34.98%), Postives = 117/223 (52.47%), Query Frame = 1
Query:    1 KWRAAMEEELRALVKNGTWESEDL--GRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVKLLPEFSSFSRGIPCGRSGNS-----SEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWA 648
            +W  AM +E++AL  N TWE  DL  G+ PI      +KW+FK K K  G V  ++ RLVA+G++  E  D+ ET +PVA+M TVRTV S+AA   + +   D++ T+L+  + EE+++ L  E+         G SG       + Y+ +VG L+Y +  TR DI + V   ++ M+ P +        + RYI   P L I        H L  + D DWA
Sbjct:  177 RWIEAMNQEIKALEDNHTWEVVDLTEGKKPIG-----SKWVFKIKYKSNGEVEMFKVRLVAKGYTQQEVLDYHETFSPVAKMVTVRTVLSIAASKGWILHQMDVNNTFLHGDLYEEVYMLLPQEYDQH-----VGHSGEEELQDIASYQRLVGKLLYLTI-TRPDICFVVQVLSQFMQHPKQSHMDATLRVVRYIKGSPGLDIFLKNGPISH-LTAYCDFDWA 387          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A699H8F3_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699H8F3_TANCI)

HSP 1 Score: 121 bits (303), Expect = 6.350e-28
Identity = 75/228 (32.89%), Postives = 121/228 (53.07%), Query Frame = 1
Query:    4 WRAAMEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLN--APVEEEL--FVKLLPEFSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 675
            W+ A+ +E+ ++++N TW   DL  LP        KWIFKRK+K  G++ +++ RLV QGF   +G D+F+T APVAR++ +R + +LAA H+  I   ++  T LN  +P+   +    KL P           G+     EY  ++G LMY    TR DI Y V + +R   +P R+       +F+Y+    + G++  G  +   LEG+ +A W    ED+ S+
Sbjct:  564 WKEAINDEISSIMENNTW---DLSDLPPGCKPLGCKWIFKRKMKVDGTIDKFKVRLVIQGFRQNKGIDYFDTYAPVARITIIRLLLALAAIHNLVIYQMNVKTTLLNDCSPMSTPMDPIEKLKPN---------TGKHVEQLEYS-IIGCLMYVMTSTRPDIAYVVGRLSRFTSNPSRQHCKAITRVFKYLRGTKDYGLSHVGYPSV--LEGYSNASWINHVEDSTST 776          
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A438DJK3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DJK3_VITVI)

HSP 1 Score: 119 bits (299), Expect = 2.190e-27
Identity = 77/229 (33.62%), Postives = 122/229 (53.28%), Query Frame = 1
Query:    4 WRAAMEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVKLLPEFSS---------FSRGIPCGRSGNSSEYRGMVGSLMY-----ASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWA 648
            W  AM+EE++AL++N TW   DL   P       +KW+FK KLKE G++ RY+ARLVA+GFS + G DF ET +PV + +T+R +FSLA    +++   D+   +L+  ++EE+F++  P F +          +R +   +    + +  +   L++       A +   I   V++A +  + P + D    K I RY+    E GI F  K +   L GF DADWA
Sbjct:  601 WLKAMQEEIKALIQNRTW---DLVPRPPTTNIVGSKWVFKTKLKEDGTIDRYKARLVARGFSQIPGLDFGETFSPVIKHTTIRMIFSLAVTLGWKMRQLDVKNAFLHGFLKEEVFMEQPPGFINEDLPNHVCKLNRSLYGLKQAPRAWFDRLSQCLLHLGFCCGKADSSLFILRKVNKACQHFQAPTKADLRAVKRILRYLKGTMEHGIRFF-KQSSLRLTGFCDADWA 825          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6V0L8_9CHLO5.860e-3536.61Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2P6UYX8_9CHLO1.290e-3436.65Retrotransposon Ty1-copia subclass n=1 Tax=Micract... [more]
A0A6L2NYR2_TANCI2.170e-3332.49Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A699IK98_TANCI1.240e-3236.97Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]
Q10P45_ORYSJ2.250e-2931.80Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A2N9HB99_FAGSY4.070e-2935.68Integrase catalytic domain-containing protein n=1 ... [more]
UPI001246877E3.030e-2832.78uncharacterized protein LOC115967312 n=1 Tax=Querc... [more]
A0A1S4AI32_TOBAC5.230e-2834.98uncharacterized protein LOC107797687 n=1 Tax=Nicot... [more]
A0A699H8F3_TANCI6.350e-2832.89Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]
A0A438DJK3_VITVI2.190e-2733.62Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17898contigH-paniculata_contig17898:2994..4180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score127.5
Seed ortholog evalue7.8e-27
Seed eggNOG ortholog981085.XP_010112166.1
KEGG koko:K02349
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000724,GO:0000725,GO:0000726,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006282,GO:0006284,GO:0006302,GO:0006303,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008094,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009653,GO:0009791,GO:0009888,GO:0009892,GO:0009933,GO:0009987,GO:0010468,GO:0010564,GO:0010569,GO:0010605,GO:0016043,GO:0016445,GO:0016446,GO:0016462,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016829,GO:0016835,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042623,GO:0042802,GO:0043142,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045738,GO:0045910,GO:0045934,GO:0046483,GO:0048507,GO:0048519,GO:0048523,GO:0048532,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051239,GO:0051259,GO:0051260,GO:0051301,GO:0051575,GO:0051716,GO:0051726,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0097159,GO:0097681,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1902749,GO:1990067,GO:2000011,GO:2000026,GO:2000042,GO:2000779,GO:2000780,GO:2001020,GO:2001021
EggNOG free text desc.DNA polymerase
EggNOG OGs37KZP@33090,3G7AS@35493,4JNSM@91835,COG0749@1,COG2801@1,KOG0017@2759,KOG0950@2759
EC2.7.7.7
COG Functional cat.A
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons2
Model size678
Cds size663
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17898.4297.1prot_H-paniculata_contig17898.4297.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17898 3009..4180 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929398.7197397-UTR-H-paniculata_contig17898:2993..30081622929398.7197397-UTR-H-paniculata_contig17898:2993..3008Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17898 2994..3008 +
1691480843.974761-UTR-H-paniculata_contig17898:2993..30081691480843.974761-UTR-H-paniculata_contig17898:2993..3008Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17898 2994..3008 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929398.7338173-CDS-H-paniculata_contig17898:3008..33851622929398.7338173-CDS-H-paniculata_contig17898:3008..3385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17898 3009..3385 +
1691480843.9864247-CDS-H-paniculata_contig17898:3008..33851691480843.9864247-CDS-H-paniculata_contig17898:3008..3385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17898 3009..3385 +
1622929398.7450206-CDS-H-paniculata_contig17898:3894..41801622929398.7450206-CDS-H-paniculata_contig17898:3894..4180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17898 3895..4180 +
1691480843.9974096-CDS-H-paniculata_contig17898:3894..41801691480843.9974096-CDS-H-paniculata_contig17898:3894..4180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17898 3895..4180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17898.4297.1

>prot_H-paniculata_contig17898.4297.1 ID=prot_H-paniculata_contig17898.4297.1|Name=mRNA_H-paniculata_contig17898.4297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=221bp
MEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEA
RLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDAT
YLNAPVEEELFVKLLPEFSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGT
RSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGH
GLEGFVDADWAEDAEDTYSS*
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mRNA from alignment at H-paniculata_contig17898:2994..4180+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17898.4297.1 ID=mRNA_H-paniculata_contig17898.4297.1|Name=mRNA_H-paniculata_contig17898.4297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1187bp|location=Sequence derived from alignment at H-paniculata_contig17898:2994..4180+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATGGCGCGCGGCAATGGAGGAGGAATTGAGGGCGTTGGTGAAAAATGG GACATGGGAAAGCGAAGATCTGGGGAGGTTACCGATATGGCGGACGGCGA CTCGTACGAAGTGGATTTTCAAGCGGAAACTGAAGGAGGGCGGCAGCGTA GCACGCTACGAAGCGCGACTGGTGGCTCAAGGCTTTTCATTGGTGGAGGG TGAAGATTTCTTTGAAACCAGTGCCCCCGTAGCTCGCATGTCGACAGTGC GTACTGTTTTTAGCCTGGCCGCTGAACATGATTTCGAAATAGAAGGCACG GACATAGATGCGACGTATTTGAACGCCCCTGTAGAAGAAGAGCTGTTTGT TAAGCTACTCCCCGAGTTTTCCTCTTTCTCCCGAGGCATACCGTTTGTGC GCCGCCTGCGTAAAAGCCTGTATCGCCTCAAGCAAAGCGGCCGAAACTGG AATAACACTCTTGATGATTTTCTTGTTGGAACAGGACTCCAGCGTTCCAC TACCGACCCGTGCTTGTACTTTTCTCGCGACGAAGGAGGAGAGACAGATA TTCTCGAGCTGTTTATGTTGACGACCTCGTCATCGCTGGACGATGTGAGA AAGTAGACGAGTTCAAGCACAACATAAGTCAACGTTTCAGGATTAAAAAC CTGGGCTCCCTCTCGCACGTGTTGGGAATAGAAGTACGACGTGACCGCCC CAATGGTACCACATCAATATTCCAAGTTAGCTACATCCGTGAGGTACTGA AAATATATGATTTTGATGAGCGTCGAGGCGTGCCCACCCCTGTAGAGGGA AAAGTGAAGACTTTGGCACCCGAATTGGCCGACAAGCCCCCCGAACCGAA AGCACTTGGAGCTGTACTGTCGGACATAGACGCAGGAGTACAAGAAAATA GCTGTGGGAGAAGTGGCAATTCATCTGAATACAGAGGCATGGTAGGATCA CTCATGTACGCCTCGGCAGGAACTAGATCTGATATACCATACGCCGTACA CCAGGCAGCACGTCGAATGGAGGACCCATGTCGGGAAGACTTCAGTACAT GCAAGAGCATTTTTCGTTATATCAGTGCTGTGCCTGAACTCGGCATTACG TTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCGTTGACGCCGA TTGGGCGGAAGATGCCGAGGATACATATTCAAGCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17898:2994..4180+

>mRNA_H-paniculata_contig17898.4297.1 ID=mRNA_H-paniculata_contig17898.4297.1|Name=mRNA_H-paniculata_contig17898.4297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at H-paniculata_contig17898:2994..4180+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAGGAATTGAGGGCGTTGGTGAAAAATGGGACATGGGAAAGCGA
AGATCTGGGGAGGTTACCGATATGGCGGACGGCGACTCGTACGAAGTGGA
TTTTCAAGCGGAAACTGAAGGAGGGCGGCAGCGTAGCACGCTACGAAGCG
CGACTGGTGGCTCAAGGCTTTTCATTGGTGGAGGGTGAAGATTTCTTTGA
AACCAGTGCCCCCGTAGCTCGCATGTCGACAGTGCGTACTGTTTTTAGCC
TGGCCGCTGAACATGATTTCGAAATAGAAGGCACGGACATAGATGCGACG
TATTTGAACGCCCCTGTAGAAGAAGAGCTGTTTGTTAAGCTACTCCCCGA
GTTTTCCTCTTTCTCCCGAGGCATACCATGGAGGAGGAATTGAGGGCGTT
GGTGAAAAATGGGACATGGGAAAGCGAAGATCTGGGGAGGTTACCGATAT
GGCGGACGGCGACTCGTACGAAGTGGATTTTCAAGCGGAAACTGAAGGAG
GGCGGCAGCGTAGCACGCTACGAAGCGCGACTGGTGGCTCAAGGCTTTTC
ATTGGTGGAGGGTGAAGATTTCTTTGAAACCAGTGCCCCCGTAGCTCGCA
TGTCGACAGTGCGTACTGTTTTTAGCCTGGCCGCTGAACATGATTTCGAA
ATAGAAGGCACGGACATAGATGCGACGTATTTGAACGCCCCTGTAGAAGA
AGAGCTGTTTGTTAAGCTACTCCCCGAGTTTTCCTCTTTCTCCCGAGGCA
TACCCTGTGGGAGAAGTGGCAATTCATCTGAATACAGAGGCATGGTAGGA
TCACTCATGTACGCCTCGGCAGGAACTAGATCTGATATACCATACGCCGT
ACACCAGGCAGCACGTCGAATGGAGGACCCATGTCGGGAAGACTTCAGTA
CATGCAAGAGCATTTTTCGTTATATCAGTGCTGTGCCTGAACTCGGCATT
ACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCGTTGACGC
CGATTGGGCGGAAGATGCCGAGGATACATATTCAAGCTGACTGTGGGAGA
AGTGGCAATTCATCTGAATACAGAGGCATGGTAGGATCACTCATGTACGC
CTCGGCAGGAACTAGATCTGATATACCATACGCCGTACACCAGGCAGCAC
GTCGAATGGAGGACCCATGTCGGGAAGACTTCAGTACATGCAAGAGCATT
TTTCGTTATATCAGTGCTGTGCCTGAACTCGGCATTACGTTCGGCGGTAA
GAGTAATGGTCACGGTCTGGAAGGATTCGTTGACGCCGATTGGGCGGAAG
ATGCCGAGGATACATATTCAAGCTGA
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