mRNA_H-paniculata_contig17898.4297.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A2P6V0L8_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0L8_9CHLO) HSP 1 Score: 141 bits (356), Expect = 5.860e-35 Identity = 82/224 (36.61%), Postives = 119/224 (53.12%), Query Frame = 1
Query: 4 WRAAMEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVKLLPEFSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 675
W+ AM++E+ +L+ N TW L P KW++K K G++ RY+ARLV QGF EG D+ E APV++ ST+RTV S AA D ++ DI +LN ++EE++ Y +VGSLMY S TR DI AV AR M +P + ++ K++ RY++ P++GITFG + GL+ F DAD A D + S+
Sbjct: 1755 WQLAMDDEMASLIANDTWT---LCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQDLDLHQLDIKTAFLNGTIDEEVYTH---------------------SYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFG--AGPPGLQVFCDADHAGDIDTRRST 1952
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A2P6UYX8_9CHLO (Retrotransposon Ty1-copia subclass n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYX8_9CHLO) HSP 1 Score: 137 bits (345), Expect = 1.290e-34 Identity = 81/221 (36.65%), Postives = 116/221 (52.49%), Query Frame = 1
Query: 13 AMEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVKLLPEFSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 675
AM++E+ +L+ N TW L P KW++K K G++ RY+ARLV QGF EG D+ E APV++ ST+RTV S A D ++ DI +LN ++EE++ Y +VGSLMY S TR DI AV AR M +P + ++ K++ RY++ P++GITFG S G L+ F DAD A D + S+
Sbjct: 72 AMDDEMASLIANDTWT---LCEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAGRQDLDLHQLDIKTAFLNGTIDEEVYTH---------------------SYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGSPG--LQVFCDADHAGDIDTRRST 266
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A6L2NYR2_TANCI (Retrotransposon protein, putative, Ty1-copia subclass (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NYR2_TANCI) HSP 1 Score: 137 bits (344), Expect = 2.170e-33 Identity = 77/237 (32.49%), Postives = 128/237 (54.01%), Query Frame = 1
Query: 4 WRAAMEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVK-----LLPE--------FSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 675
W+ A+++E+ ++++N TW L LP+ KWIFK+K+K G++ +++ARLV QGF EG D+F+T APV+RM+T+R + +L A H+ I D+ +LN ++EE+++K ++P S G+ + EY +G LMYA T DI YAV + +R +P R+ + +F+YI G+++ L+G+ DA W ED+ S+
Sbjct: 792 WKEAIDDEIGSIMENNTWV---LSNLPLGCKPLGCKWIFKKKMKVDGTINKFKARLVIQGFRQKEGIDYFDTYAPVSRMTTIRLLLALVATHNLVIHQMDVKIAFLNGDLDEEVYMKQPKRCVMPGDNHKVCKLVKSLKARPNTGKPVDQLEYSRTIGCLMYAMTNTGPDIAYAVGRLSRFTSNPSRQHWQAITRVFKYIKGTMSYGLSY--VEYPSVLKGYSDASWINHVEDSSST 1023
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A699IK98_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699IK98_TANCI) HSP 1 Score: 128 bits (322), Expect = 1.240e-32 Identity = 78/211 (36.97%), Postives = 114/211 (54.03%), Query Frame = 1
Query: 40 VKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVKLLPEFSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYS 672
+ N TWE DL P A KWI KRK+K GS+ +Y+ARLV QGF E DFF+T A VAR+ST+R + +LAA HD I D+ +LN ++E++++K F + G + EY VG LMYA TR +I +AV + +R +P + +F+Y+ + G+T+ G + +EG+ DA W + ED S
Sbjct: 1 MHNDTWELTDL---PRGCKALGCKWILKRKMKVDGSIDKYKARLVIQGFRQKEEIDFFDTYALVARISTIRLLLALAAIHDLVIHQMDVKTAFLNGDLDEKIYMKQPEGF------VMLGHE-SKLEYSRAVGCLMYAMINTRPNITFAVRKLSRYNSNPSALHWQALGRVFQYLKGTVDYGLTYSGYPSV--IEGYSDASWINNMEDHSS 199
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: Q10P45_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q10P45_ORYSJ) HSP 1 Score: 125 bits (314), Expect = 2.250e-29 Identity = 76/239 (31.80%), Postives = 128/239 (53.56%), Query Frame = 1
Query: 4 WRAAMEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFV------KLLPEFSSF-SRGIPCGRSG------NSSEYRGMVGSL------MYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAED 663
W+ A+ E+ +++ NGTWE + P KW+FK+KL+ G++ +Y+ARLVA+G++ EGEDFF+T +PVAR+ T+R + +LAA HD + D+ +LN +EEE+++ ++ E + S+ G N RG G + M+ SA TR DI +AV + +R + +P + + + + RY+ I + G LEG+ D++W DA++
Sbjct: 729 WKEAVHSEMDSMMSNGTWEVVER---PYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLITIRVLLALAASHDLLVHQMDVKTAFLNGELEEEIYMDQPDSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGYEGGIHLCNPTMWTSA-TRPDISFAVSKMSRFVSNPGDDHWQALERVMRYLKGTMSYRIHYTGYPKV--LEGYSDSNWISDADE 961
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A2N9HB99_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HB99_FAGSY) HSP 1 Score: 124 bits (312), Expect = 4.070e-29 Identity = 81/227 (35.68%), Postives = 127/227 (55.95%), Query Frame = 1
Query: 4 WRAAMEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVKLLPE---FSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 675
W+ AM+EEL AL+K GTW+ DL P ++A KW++K K + GG+V RY+ARLVA+GF+ G D+ ET APVAR+S+VRT+ +++ + + D+ + N + EE++++L P S + + + +S +V SL+Y + TR DI YAVH + M P ++ I Y+ G+ F +S+ L+ + DADWA D D S+
Sbjct: 644 WQQAMKEELDALLKTGTWDLVDL---PAGKSALGCKWVYKIKTRSGGTVDRYKARLVAKGFTQEYGIDYEETFAPVARISSVRTLIAVSVSRHWPLFQMDVKNAFFNGELIEEVYMQLPPASPFLSMVFQLVHMIQLCSSDAQIMLVESLVYLTV-TRPDISYAVHIVIQFMVAPRSLHYAVVLRILWYLKGTLFHGLHFSSQSS-LTLQAYSDADWAGDPTDRRST 865
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: UPI001246877E (uncharacterized protein LOC115967312 n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI001246877E) HSP 1 Score: 116 bits (290), Expect = 3.030e-28 Identity = 79/241 (32.78%), Postives = 121/241 (50.21%), Query Frame = 1
Query: 16 MEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVK-----LLPEF----------------SSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 675
M ++L +N W L P TKWIF+ K E G+V +ARLVAQG+S +EG D+ ET A VARM ++R + +LA + F+ D+ +LN ++E+++V+ + P F S R GR+ + S YR M+GSL+Y +A +R DI Y++ AR +P + K I +Y+ E G+ + K L + DADWA +A+D S+
Sbjct: 1 MHDKLLQFQRNDVWT---LVSRPEGEHIIGTKWIFRNKTDEEGNVIWNKARLVAQGYSQMEGVDYDETFALVARMESIRILLALACQLKFKFYQMDVKTAFLNGFLKEDIYVEQPKGFIDPHFPDHVPQESTLWVKASPQSLIRQKDSGRNVDPSLYRSMIGSLLYLTA-SRPDISYSIGVCARYQANPKESHMTALKRIIKYVKTTAEFGVWYS-KDTSDVLARYSDADWAGNADDRKST 236
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A1S4AI32_TOBAC (uncharacterized protein LOC107797687 n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4AI32_TOBAC) HSP 1 Score: 119 bits (297), Expect = 5.230e-28 Identity = 78/223 (34.98%), Postives = 117/223 (52.47%), Query Frame = 1
Query: 1 KWRAAMEEELRALVKNGTWESEDL--GRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVKLLPEFSSFSRGIPCGRSGNS-----SEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWA 648
+W AM +E++AL N TWE DL G+ PI +KW+FK K K G V ++ RLVA+G++ E D+ ET +PVA+M TVRTV S+AA + + D++ T+L+ + EE+++ L E+ G SG + Y+ +VG L+Y + TR DI + V ++ M+ P + + RYI P L I H L + D DWA
Sbjct: 177 RWIEAMNQEIKALEDNHTWEVVDLTEGKKPIG-----SKWVFKIKYKSNGEVEMFKVRLVAKGYTQQEVLDYHETFSPVAKMVTVRTVLSIAASKGWILHQMDVNNTFLHGDLYEEVYMLLPQEYDQH-----VGHSGEEELQDIASYQRLVGKLLYLTI-TRPDICFVVQVLSQFMQHPKQSHMDATLRVVRYIKGSPGLDIFLKNGPISH-LTAYCDFDWA 387
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A699H8F3_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699H8F3_TANCI) HSP 1 Score: 121 bits (303), Expect = 6.350e-28 Identity = 75/228 (32.89%), Postives = 121/228 (53.07%), Query Frame = 1
Query: 4 WRAAMEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLN--APVEEEL--FVKLLPEFSSFSRGIPCGRSGNSSEYRGMVGSLMYASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWAEDAEDTYSS 675
W+ A+ +E+ ++++N TW DL LP KWIFKRK+K G++ +++ RLV QGF +G D+F+T APVAR++ +R + +LAA H+ I ++ T LN +P+ + KL P G+ EY ++G LMY TR DI Y V + +R +P R+ +F+Y+ + G++ G + LEG+ +A W ED+ S+
Sbjct: 564 WKEAINDEISSIMENNTW---DLSDLPPGCKPLGCKWIFKRKMKVDGTIDKFKVRLVIQGFRQNKGIDYFDTYAPVARITIIRLLLALAAIHNLVIYQMNVKTTLLNDCSPMSTPMDPIEKLKPN---------TGKHVEQLEYS-IIGCLMYVMTSTRPDIAYVVGRLSRFTSNPSRQHCKAITRVFKYLRGTKDYGLSHVGYPSV--LEGYSNASWINHVEDSTST 776
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Match: A0A438DJK3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DJK3_VITVI) HSP 1 Score: 119 bits (299), Expect = 2.190e-27 Identity = 77/229 (33.62%), Postives = 122/229 (53.28%), Query Frame = 1
Query: 4 WRAAMEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEARLVAQGFSLVEGEDFFETSAPVARMSTVRTVFSLAAEHDFEIEGTDIDATYLNAPVEEELFVKLLPEFSS---------FSRGIPCGRSGNSSEYRGMVGSLMY-----ASAGTRSDIPYAVHQAARRMEDPCREDFSTCKSIFRYISAVPELGITFGGKSNGHGLEGFVDADWA 648
W AM+EE++AL++N TW DL P +KW+FK KLKE G++ RY+ARLVA+GFS + G DF ET +PV + +T+R +FSLA +++ D+ +L+ ++EE+F++ P F + +R + + + + + L++ A + I V++A + + P + D K I RY+ E GI F K + L GF DADWA
Sbjct: 601 WLKAMQEEIKALIQNRTW---DLVPRPPTTNIVGSKWVFKTKLKEDGTIDRYKARLVARGFSQIPGLDFGETFSPVIKHTTIRMIFSLAVTLGWKMRQLDVKNAFLHGFLKEEVFMEQPPGFINEDLPNHVCKLNRSLYGLKQAPRAWFDRLSQCLLHLGFCCGKADSSLFILRKVNKACQHFQAPTKADLRAVKRILRYLKGTMEHGIRFF-KQSSLRLTGFCDADWA 825 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17898.4297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17898.4297.1 >prot_H-paniculata_contig17898.4297.1 ID=prot_H-paniculata_contig17898.4297.1|Name=mRNA_H-paniculata_contig17898.4297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=221bp MEEELRALVKNGTWESEDLGRLPIWRTATRTKWIFKRKLKEGGSVARYEAback to top mRNA from alignment at H-paniculata_contig17898:2994..4180+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17898.4297.1 ID=mRNA_H-paniculata_contig17898.4297.1|Name=mRNA_H-paniculata_contig17898.4297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1187bp|location=Sequence derived from alignment at H-paniculata_contig17898:2994..4180+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17898:2994..4180+ >mRNA_H-paniculata_contig17898.4297.1 ID=mRNA_H-paniculata_contig17898.4297.1|Name=mRNA_H-paniculata_contig17898.4297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at H-paniculata_contig17898:2994..4180+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |